Wall clock time and date at job start Mon Mar 30 2020 04:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47212 * 2 1 4 4 H 1.08996 * 109.47359 * 325.24103 * 3 2 1 5 5 C 1.50697 * 109.46853 * 205.23601 * 3 2 1 6 6 H 1.07999 * 120.00091 * 245.89574 * 5 3 2 7 7 C 1.37876 * 120.00079 * 65.90195 * 5 3 2 8 8 N 1.31516 * 120.00039 * 185.80663 * 7 5 3 9 9 Si 1.86802 * 119.99930 * 5.80380 * 7 5 3 10 10 H 1.48503 * 109.47080 * 95.11567 * 9 7 5 11 11 H 1.48495 * 109.47290 * 215.11607 * 9 7 5 12 12 H 1.48503 * 109.46941 * 335.12069 * 9 7 5 13 13 N 1.46901 * 109.46712 * 85.23980 * 3 2 1 14 14 C 1.46847 * 111.00190 * 299.44152 * 13 3 2 15 15 C 1.53034 * 109.52476 * 185.84636 * 14 13 3 16 16 C 1.53123 * 109.27590 * 300.81425 * 15 14 13 17 17 C 1.53124 * 109.21017 * 57.62548 * 16 15 14 18 18 H 1.09000 * 109.50391 * 62.32050 * 17 16 15 19 19 C 1.53000 * 109.50404 * 182.43702 * 17 16 15 20 20 H 1.09003 * 109.46969 * 59.99792 * 19 17 16 21 21 C 1.53002 * 109.46825 * 299.99946 * 19 17 16 22 22 O 1.42895 * 109.47225 * 179.97438 * 19 17 16 23 23 C 1.46845 * 111.00299 * 63.65150 * 13 3 2 24 24 H 1.09008 * 109.47034 * 52.14658 * 1 2 3 25 25 H 1.08999 * 109.47460 * 172.13803 * 1 2 3 26 26 H 1.08997 * 109.47082 * 292.14869 * 1 2 3 27 27 H 1.08997 * 109.46907 * 239.99871 * 2 1 3 28 28 H 1.08999 * 109.46464 * 120.00403 * 2 1 3 29 29 H 0.96999 * 119.99565 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46482 * 65.82392 * 14 13 3 31 31 H 1.09011 * 109.45830 * 305.85490 * 14 13 3 32 32 H 1.08996 * 109.50271 * 180.88032 * 15 14 13 33 33 H 1.08997 * 109.54125 * 60.77397 * 15 14 13 34 34 H 1.08994 * 109.52414 * 177.55746 * 16 15 14 35 35 H 1.08995 * 109.52250 * 297.69117 * 16 15 14 36 36 H 1.09006 * 109.47215 * 60.00301 * 21 19 17 37 37 H 1.09000 * 109.46688 * 179.97438 * 21 19 17 38 38 H 1.08994 * 109.47386 * 299.99761 * 21 19 17 39 39 H 0.96703 * 114.00073 * 60.00002 * 22 19 17 40 40 H 1.09005 * 109.46097 * 294.17577 * 23 13 3 41 41 H 1.09000 * 109.46392 * 54.14082 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3652 2.0665 -0.5859 5 6 3.4192 1.4876 -0.6058 6 1 4.2680 1.7603 0.0037 7 6 3.5973 1.1808 -1.9381 8 7 4.8109 1.1084 -2.4397 9 14 2.1149 0.8678 -3.0307 10 1 1.7467 2.1214 -3.7366 11 1 2.4471 -0.1821 -4.0270 12 1 0.9722 0.4153 -2.1971 13 7 2.0949 1.9423 1.3803 14 6 0.7635 1.9253 1.9995 15 6 0.8322 2.5853 3.3785 16 6 1.8324 1.8246 4.2536 17 6 3.1994 1.8143 3.5639 18 1 3.5620 2.8369 3.4593 19 6 4.1891 1.0040 4.4035 20 1 3.8264 -0.0188 4.5060 21 6 4.3221 1.6393 5.7890 22 8 5.4644 0.9943 3.7590 23 6 3.0617 1.1781 2.1788 24 1 -0.3633 0.6307 -0.8115 25 1 -0.3634 -1.0180 -0.1406 26 1 -0.3633 0.3874 0.9518 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.9362 0.8922 -3.3769 30 1 0.4259 0.8944 2.1066 31 1 0.0628 2.4731 1.3692 32 1 -0.1528 2.5584 3.8443 33 1 1.1561 3.6205 3.2714 34 1 1.9169 2.3170 5.2223 35 1 1.4877 0.8002 4.3944 36 1 3.3491 1.6463 6.2805 37 1 5.0268 1.0618 6.3873 38 1 4.6847 2.6620 5.6866 39 1 5.8486 1.8729 3.6340 40 1 2.7133 0.1507 2.2851 41 1 4.0302 1.1831 1.6789 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708330171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:01 Heat of formation + Delta-G solvation = -50.670131 kcal Electronic energy + Delta-G solvation = -19039.811872 eV Core-core repulsion = 16340.507825 eV Total energy + Delta-G solvation = -2699.304047 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.35449 -37.14984 -34.68138 -32.22018 -31.32083 -30.81781 -28.75921 -27.36791 -23.91551 -23.21239 -22.33613 -20.97933 -19.99174 -18.98529 -16.75419 -16.23641 -15.62071 -15.04639 -14.71684 -14.24710 -13.98398 -13.60500 -13.43820 -12.98299 -12.78835 -12.37187 -12.26082 -12.23686 -11.82721 -11.53159 -11.41945 -11.24347 -10.88871 -10.78646 -10.53582 -10.41561 -10.35930 -10.13403 -9.88155 -9.68850 -9.39513 -9.27069 -8.87729 -8.45196 -7.17554 -6.00765 -3.98306 3.32130 3.42253 3.45205 4.47785 4.53289 4.72719 5.05324 5.14256 5.22337 5.26294 5.31994 5.39723 5.51244 5.74061 5.78986 5.86388 5.89612 5.92482 5.99167 6.07488 6.09974 6.13962 6.15497 6.27881 6.29054 6.45413 6.49461 6.62593 6.70015 6.76225 6.86003 6.92349 7.11218 7.38014 7.67673 7.92867 8.05972 8.22470 8.72726 9.07030 9.62088 11.11490 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025947 B = 0.008362 C = 0.006843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.876079 B = 3347.568919 C = 4090.875201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.157 4.157 3 C 0.191 3.809 4 H 0.036 0.964 5 C -0.505 4.505 6 H 0.082 0.918 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.853 3.147 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.238 1.238 13 N -0.522 5.522 14 C 0.043 3.957 15 C -0.116 4.116 16 C -0.112 4.112 17 C -0.117 4.117 18 H 0.076 0.924 19 C 0.107 3.893 20 H 0.091 0.909 21 C -0.184 4.184 22 O -0.559 6.559 23 C 0.071 3.929 24 H 0.050 0.950 25 H 0.035 0.965 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.262 0.738 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.374 0.626 40 H 0.022 0.978 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.493 0.853 13.447 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.196 4.196 3 C 0.083 3.917 4 H 0.053 0.947 5 C -0.543 4.543 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.680 3.320 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.162 1.162 13 N -0.245 5.245 14 C -0.085 4.085 15 C -0.154 4.154 16 C -0.150 4.150 17 C -0.136 4.136 18 H 0.095 0.905 19 C 0.048 3.952 20 H 0.109 0.891 21 C -0.242 4.242 22 O -0.364 6.364 23 C -0.057 4.057 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.221 0.779 40 H 0.040 0.960 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.342 0.662 13.259 14.713 hybrid contribution -0.983 -0.441 -0.780 1.330 sum -7.324 0.221 12.479 14.471 Atomic orbital electron populations 1.22366 0.98341 1.00155 1.01427 1.22660 0.93340 1.02168 1.01430 1.19706 0.97721 0.88879 0.85345 0.94651 1.21007 0.92117 1.45997 0.95143 0.90039 1.24898 0.95392 0.94844 0.97866 1.69913 1.20676 1.49173 1.14004 0.87415 0.85429 0.78129 0.80996 1.20977 1.21694 1.16176 1.62066 1.04954 1.54502 1.02940 1.22375 0.92944 0.98516 0.94662 1.21591 0.97997 1.00238 0.95554 1.21606 0.95261 1.00096 0.98019 1.21963 0.94991 1.00500 0.96169 0.90529 1.21887 0.83572 0.99739 0.90020 0.89083 1.22548 1.02267 1.01217 0.98121 1.86602 1.34045 1.34150 1.81595 1.21982 0.98924 0.93421 0.91397 0.93146 0.94564 0.92271 0.91966 0.93059 0.92831 0.94508 0.91802 0.92577 0.91537 0.92343 0.92643 0.91613 0.92340 0.92426 0.77866 0.96010 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 8.79 37.16 0.33 -2.69 16 2 C -0.16 -3.37 4.04 -26.73 -0.11 -3.47 16 3 C 0.19 4.44 1.59 -68.87 -0.11 4.33 16 4 H 0.04 0.86 6.68 -51.93 -0.35 0.51 16 5 C -0.50 -13.97 8.46 -34.44 -0.29 -14.26 16 6 H 0.08 2.47 6.45 -52.49 -0.34 2.13 16 7 C 0.07 2.05 5.32 -17.82 -0.09 1.95 16 8 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 9 Si 0.85 20.91 25.66 -169.99 -4.36 16.55 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.24 -5.35 3.66 56.52 0.21 -5.14 16 13 N -0.52 -10.59 4.67 -228.08 -1.07 -11.65 16 14 C 0.04 0.73 3.87 -3.84 -0.01 0.71 16 15 C -0.12 -1.60 6.10 -26.65 -0.16 -1.76 16 16 C -0.11 -1.45 4.85 -26.60 -0.13 -1.58 16 17 C -0.12 -1.74 2.12 -90.53 -0.19 -1.93 16 18 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 19 C 0.11 1.45 3.17 -26.73 -0.08 1.36 16 20 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 21 C -0.18 -1.94 9.18 37.16 0.34 -1.60 16 22 O -0.56 -8.61 12.70 -35.23 -0.45 -9.06 16 23 C 0.07 1.36 3.96 -3.83 -0.02 1.34 16 24 H 0.05 0.93 6.84 -51.92 -0.36 0.58 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.97 4.61 -51.93 -0.24 0.73 16 27 H 0.06 1.45 5.09 -51.93 -0.26 1.19 16 28 H 0.05 1.09 5.82 -51.93 -0.30 0.78 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.04 0.62 5.27 -51.93 -0.27 0.34 16 31 H 0.06 1.07 8.07 -51.92 -0.42 0.65 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.64 6.57 -51.93 -0.34 0.30 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.62 6.49 -51.93 -0.34 0.29 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.37 4.63 9.05 45.56 0.41 5.05 16 40 H 0.02 0.43 6.27 -51.93 -0.33 0.11 16 41 H 0.10 2.23 5.54 -51.93 -0.29 1.94 16 LS Contribution 292.49 15.07 4.41 4.41 Total: -1.00 -30.37 292.49 -7.36 -37.73 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.13 Total: 6.39 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -0.53 Total: -17.59 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: -0.29 Total: -38.42 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.45 Total: -9.06 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.36 Total: 16.55 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.37 -7.36 -37.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708330171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.941 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds