Wall clock time and date at job start Mon Mar 30 2020 04:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47284 * 2 1 4 4 H 1.09006 * 109.46913 * 302.40755 * 3 2 1 5 5 C 1.50701 * 109.47280 * 182.40794 * 3 2 1 6 6 H 1.07998 * 119.99713 * 240.00282 * 5 3 2 7 7 C 1.37874 * 119.99813 * 59.72148 * 5 3 2 8 8 N 1.31515 * 120.00449 * 0.27996 * 7 5 3 9 9 Si 1.86797 * 119.99850 * 180.27621 * 7 5 3 10 10 H 1.48502 * 109.47118 * 60.00229 * 9 7 5 11 11 H 1.48506 * 109.47277 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47214 * 299.99977 * 9 7 5 13 13 N 1.46899 * 109.47093 * 62.40760 * 3 2 1 14 14 C 1.46849 * 110.99805 * 189.69151 * 13 3 2 15 15 C 1.53037 * 109.52121 * 174.15951 * 14 13 3 16 16 C 1.53123 * 109.27883 * 59.17905 * 15 14 13 17 17 C 1.53118 * 109.16190 * 302.34607 * 16 15 14 18 18 H 1.09004 * 109.49621 * 297.71252 * 17 16 15 19 19 C 1.52996 * 109.50657 * 177.63803 * 17 16 15 20 20 H 1.08997 * 109.47042 * 184.99859 * 19 17 16 21 21 C 1.52994 * 109.47448 * 64.99328 * 19 17 16 22 22 O 1.42901 * 109.46806 * 304.99546 * 19 17 16 23 23 C 1.46843 * 111.00297 * 65.47878 * 13 3 2 24 24 H 1.08994 * 109.47226 * 174.66809 * 1 2 3 25 25 H 1.08998 * 109.46908 * 294.66326 * 1 2 3 26 26 H 1.08994 * 109.46919 * 54.66117 * 1 2 3 27 27 H 1.08995 * 109.46702 * 239.99713 * 2 1 3 28 28 H 1.09005 * 109.47098 * 120.00268 * 2 1 3 29 29 H 0.96996 * 120.00495 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.46353 * 294.17504 * 14 13 3 31 31 H 1.08993 * 109.46664 * 54.14519 * 14 13 3 32 32 H 1.09000 * 109.50480 * 179.11682 * 15 14 13 33 33 H 1.09000 * 109.50839 * 299.20019 * 15 14 13 34 34 H 1.08996 * 109.52156 * 62.24830 * 16 15 14 35 35 H 1.08998 * 109.52153 * 182.43584 * 16 15 14 36 36 H 1.09007 * 109.47021 * 60.00394 * 21 19 17 37 37 H 1.08996 * 109.47441 * 180.02562 * 21 19 17 38 38 H 1.08997 * 109.47433 * 300.00292 * 21 19 17 39 39 H 0.96701 * 114.00086 * 60.00234 * 22 19 17 40 40 H 1.08998 * 109.46400 * 305.85840 * 23 13 3 41 41 H 1.09007 * 109.45713 * 65.82082 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6419 1.9686 -0.8677 5 6 3.5459 1.4429 -0.0597 6 1 4.1176 1.8992 0.7348 7 6 4.1936 0.8555 -1.1257 8 7 3.4974 0.2997 -2.0932 9 14 6.0603 0.8492 -1.1959 10 1 6.5978 0.1335 -0.0109 11 1 6.5068 0.1621 -2.4344 12 1 6.5603 2.2476 -1.1985 13 7 1.5985 2.1179 1.2275 14 6 1.8689 3.5598 1.1610 15 6 1.2674 4.2499 2.3874 16 6 1.8838 3.6540 3.6560 17 6 1.6299 2.1441 3.6767 18 1 0.5567 1.9561 3.7092 19 6 2.2934 1.5314 4.9117 20 1 2.1887 0.4469 4.8800 21 6 1.6193 2.0722 6.1741 22 8 3.6802 1.8758 4.9275 23 6 2.2208 1.5150 2.4130 24 1 -0.3633 -1.0232 -0.0955 25 1 -0.3633 0.4288 0.9339 26 1 -0.3633 0.5944 -0.8383 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.9531 -0.1131 -2.8433 30 1 2.9459 3.7268 1.1420 31 1 1.4217 3.9719 0.2566 32 1 1.4818 5.3178 2.3457 33 1 0.1884 4.0956 2.3993 34 1 2.9573 3.8429 3.6628 35 1 1.4268 4.1123 4.5330 36 1 0.5614 1.8095 6.1621 37 1 2.0922 1.6360 7.0539 38 1 1.7240 3.1567 6.2058 39 1 3.8489 2.8275 4.9557 40 1 2.0292 0.4420 2.4178 41 1 3.2962 1.6916 2.3881 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708330175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:04 Heat of formation + Delta-G solvation = -69.422658 kcal Electronic energy + Delta-G solvation = -19036.793431 eV Core-core repulsion = 16336.676213 eV Total energy + Delta-G solvation = -2700.117218 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.21910 -36.86194 -34.33473 -31.96250 -31.48771 -30.27986 -28.92502 -26.47880 -24.15201 -23.14610 -22.49585 -20.79118 -19.28565 -18.84957 -16.45935 -16.24991 -15.27910 -15.11489 -14.43719 -14.27924 -13.93610 -13.40285 -13.13240 -12.90841 -12.69182 -12.35615 -12.07581 -11.85761 -11.63858 -11.33735 -11.11422 -10.93741 -10.90431 -10.65836 -10.46148 -10.37944 -10.24257 -9.99039 -9.86931 -9.61033 -9.40425 -9.18746 -8.97635 -8.31467 -7.03066 -5.93954 -4.06944 3.31609 3.36177 3.39950 4.43928 4.55723 4.88403 5.03395 5.14419 5.28627 5.33507 5.41152 5.47039 5.58853 5.87951 5.90351 5.98642 6.06943 6.12476 6.25854 6.28804 6.36972 6.41331 6.48429 6.50158 6.62150 6.70259 6.79310 6.87072 7.03038 7.15689 7.23360 7.41835 7.66306 7.81887 7.84901 8.04846 8.22317 8.39855 8.54490 9.03467 9.60448 11.05075 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021947 B = 0.008306 C = 0.007374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.493354 B = 3370.095092 C = 3796.040580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.215 3.785 4 H 0.036 0.964 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.535 5.535 14 C 0.063 3.937 15 C -0.113 4.113 16 C -0.116 4.116 17 C -0.118 4.118 18 H 0.077 0.923 19 C 0.106 3.894 20 H 0.096 0.904 21 C -0.183 4.183 22 O -0.561 6.561 23 C 0.073 3.927 24 H 0.024 0.976 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.091 0.909 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.033 0.967 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.369 0.631 40 H 0.066 0.934 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 4.710 11.345 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.109 3.891 4 H 0.054 0.946 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.526 5.526 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.259 5.259 14 C -0.066 4.066 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.137 4.137 18 H 0.095 0.905 19 C 0.046 3.954 20 H 0.114 0.886 21 C -0.241 4.241 22 O -0.366 6.366 23 C -0.055 4.055 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.109 0.891 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.216 0.784 40 H 0.084 0.916 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.960 3.897 11.166 12.825 hybrid contribution 1.834 0.659 -0.200 1.959 sum -3.126 4.556 10.967 12.280 Atomic orbital electron populations 1.21684 0.98908 0.98230 1.00479 1.21596 0.92116 0.99264 1.01932 1.19253 0.92603 0.90947 0.86342 0.94605 1.21727 0.92763 1.37098 1.06403 0.92568 1.24900 0.97865 0.95094 0.95558 1.69863 1.35017 1.37689 1.10017 0.86758 0.86377 0.78148 0.77329 1.20272 1.21299 1.20452 1.62380 1.57869 1.01560 1.04045 1.21827 0.98369 0.90116 0.96284 1.21572 1.00474 0.98118 0.94966 1.21613 1.00333 0.95541 0.97843 1.21931 1.00812 0.95192 0.95733 0.90463 1.21923 0.80888 0.99773 0.92790 0.88645 1.22523 1.01328 1.01581 0.98651 1.86597 1.24450 1.28603 1.96987 1.21819 0.97255 0.98191 0.88283 0.95717 0.93589 0.94257 0.89081 0.94897 0.92914 0.94869 0.92105 0.92749 0.91925 0.92482 0.92725 0.91764 0.92387 0.92347 0.78395 0.91581 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.71 37.16 0.36 -2.42 16 2 C -0.11 -2.65 5.09 -26.73 -0.14 -2.78 16 3 C 0.21 5.31 1.74 -68.87 -0.12 5.19 16 4 H 0.04 0.99 7.99 -51.93 -0.42 0.57 16 5 C -0.54 -14.59 7.23 -34.44 -0.25 -14.84 16 6 H 0.06 1.54 5.84 -52.49 -0.31 1.23 16 7 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 8 N -0.89 -25.18 11.29 55.43 0.63 -24.55 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.53 -11.16 4.05 -228.08 -0.92 -12.08 16 14 C 0.06 1.20 5.18 -3.83 -0.02 1.18 16 15 C -0.11 -1.70 6.09 -26.65 -0.16 -1.86 16 16 C -0.12 -1.58 4.62 -26.61 -0.12 -1.70 16 17 C -0.12 -1.77 2.18 -90.54 -0.20 -1.96 16 18 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 19 C 0.11 1.43 3.34 -26.74 -0.09 1.34 16 20 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 21 C -0.18 -1.95 9.29 37.15 0.35 -1.60 16 22 O -0.56 -8.41 12.76 -35.23 -0.45 -8.86 16 23 C 0.07 1.43 3.97 -3.84 -0.02 1.41 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.90 7.83 -51.93 -0.41 0.49 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.09 2.44 6.00 -51.93 -0.31 2.13 16 28 H 0.03 0.78 6.31 -51.93 -0.33 0.45 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.03 0.70 7.27 -51.93 -0.38 0.32 16 31 H 0.06 1.19 8.02 -51.93 -0.42 0.77 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.78 6.60 -51.93 -0.34 0.44 16 35 H 0.05 0.63 6.69 -51.93 -0.35 0.28 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.57 6.62 -51.93 -0.34 0.23 16 39 H 0.37 4.45 7.14 45.56 0.33 4.78 16 40 H 0.07 1.37 6.15 -51.93 -0.32 1.05 16 41 H 0.04 0.99 6.04 -51.93 -0.31 0.68 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -28.32 304.67 -8.10 -36.42 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.42 Total: 4.25 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -0.50 Total: -16.27 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.30 Total: -36.63 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.45 Total: -8.86 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.32 -8.10 -36.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708330175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.006 kcal (2) G-P(sol) polarization free energy of solvation -28.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds