Wall clock time and date at job start Mon Mar 30 2020 04:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47284 * 2 1 4 4 H 1.09006 * 109.46913 * 302.40755 * 3 2 1 5 5 C 1.50701 * 109.47280 * 182.40794 * 3 2 1 6 6 H 1.07998 * 119.99713 * 240.00282 * 5 3 2 7 7 C 1.37874 * 119.99813 * 59.72148 * 5 3 2 8 8 N 1.31515 * 120.00449 * 0.27996 * 7 5 3 9 9 Si 1.86797 * 119.99850 * 180.27621 * 7 5 3 10 10 H 1.48502 * 109.47118 * 60.00229 * 9 7 5 11 11 H 1.48506 * 109.47277 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47214 * 299.99977 * 9 7 5 13 13 N 1.46899 * 109.47093 * 62.40760 * 3 2 1 14 14 C 1.46849 * 110.99805 * 189.69151 * 13 3 2 15 15 C 1.53037 * 109.52121 * 174.15951 * 14 13 3 16 16 C 1.53123 * 109.27883 * 59.17905 * 15 14 13 17 17 C 1.53118 * 109.16190 * 302.34607 * 16 15 14 18 18 H 1.09004 * 109.49621 * 297.71252 * 17 16 15 19 19 C 1.52996 * 109.50657 * 177.63803 * 17 16 15 20 20 H 1.08997 * 109.47042 * 184.99859 * 19 17 16 21 21 C 1.52994 * 109.47448 * 64.99328 * 19 17 16 22 22 O 1.42901 * 109.46806 * 304.99546 * 19 17 16 23 23 C 1.46843 * 111.00297 * 65.47878 * 13 3 2 24 24 H 1.08994 * 109.47226 * 174.66809 * 1 2 3 25 25 H 1.08998 * 109.46908 * 294.66326 * 1 2 3 26 26 H 1.08994 * 109.46919 * 54.66117 * 1 2 3 27 27 H 1.08995 * 109.46702 * 239.99713 * 2 1 3 28 28 H 1.09005 * 109.47098 * 120.00268 * 2 1 3 29 29 H 0.96996 * 120.00495 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.46353 * 294.17504 * 14 13 3 31 31 H 1.08993 * 109.46664 * 54.14519 * 14 13 3 32 32 H 1.09000 * 109.50480 * 179.11682 * 15 14 13 33 33 H 1.09000 * 109.50839 * 299.20019 * 15 14 13 34 34 H 1.08996 * 109.52156 * 62.24830 * 16 15 14 35 35 H 1.08998 * 109.52153 * 182.43584 * 16 15 14 36 36 H 1.09007 * 109.47021 * 60.00394 * 21 19 17 37 37 H 1.08996 * 109.47441 * 180.02562 * 21 19 17 38 38 H 1.08997 * 109.47433 * 300.00292 * 21 19 17 39 39 H 0.96701 * 114.00086 * 60.00234 * 22 19 17 40 40 H 1.08998 * 109.46400 * 305.85840 * 23 13 3 41 41 H 1.09007 * 109.45713 * 65.82082 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6419 1.9686 -0.8677 5 6 3.5459 1.4429 -0.0597 6 1 4.1176 1.8992 0.7348 7 6 4.1936 0.8555 -1.1257 8 7 3.4974 0.2997 -2.0932 9 14 6.0603 0.8492 -1.1959 10 1 6.5978 0.1335 -0.0109 11 1 6.5068 0.1621 -2.4344 12 1 6.5603 2.2476 -1.1985 13 7 1.5985 2.1179 1.2275 14 6 1.8689 3.5598 1.1610 15 6 1.2674 4.2499 2.3874 16 6 1.8838 3.6540 3.6560 17 6 1.6299 2.1441 3.6767 18 1 0.5567 1.9561 3.7092 19 6 2.2934 1.5314 4.9117 20 1 2.1887 0.4469 4.8800 21 6 1.6193 2.0722 6.1741 22 8 3.6802 1.8758 4.9275 23 6 2.2208 1.5150 2.4130 24 1 -0.3633 -1.0232 -0.0955 25 1 -0.3633 0.4288 0.9339 26 1 -0.3633 0.5944 -0.8383 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.9531 -0.1131 -2.8433 30 1 2.9459 3.7268 1.1420 31 1 1.4217 3.9719 0.2566 32 1 1.4818 5.3178 2.3457 33 1 0.1884 4.0956 2.3993 34 1 2.9573 3.8429 3.6628 35 1 1.4268 4.1123 4.5330 36 1 0.5614 1.8095 6.1621 37 1 2.0922 1.6360 7.0539 38 1 1.7240 3.1567 6.2058 39 1 3.8489 2.8275 4.9557 40 1 2.0292 0.4420 2.4178 41 1 3.2962 1.6916 2.3881 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708330175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:04 Heat of formation + Delta-G solvation = -88.427476 kcal Electronic energy + Delta-G solvation = -19037.617541 eV Core-core repulsion = 16336.676213 eV Total energy + Delta-G solvation = -2700.941329 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59775 -38.30686 -35.95168 -33.84479 -32.88624 -31.83160 -30.10198 -28.40442 -25.74011 -24.58777 -24.10302 -22.15305 -20.91574 -20.44909 -18.26760 -17.73282 -16.83074 -16.38119 -16.12881 -15.75251 -15.21225 -15.08980 -14.68604 -14.49684 -14.24961 -13.71875 -13.38073 -13.20848 -13.05032 -12.99492 -12.82193 -12.67827 -12.52900 -12.18330 -12.12841 -11.81554 -11.66504 -11.51662 -11.44976 -11.42256 -11.04602 -10.76412 -10.56892 -10.40855 -8.87630 -8.03326 -6.26151 1.34485 1.35813 1.43107 2.38248 3.13562 3.35464 3.63532 3.86843 3.94466 4.15811 4.26983 4.39192 4.51408 4.56542 4.62728 4.72318 4.75025 4.77703 4.87920 4.92902 5.01368 5.06446 5.08605 5.13874 5.22919 5.23976 5.30489 5.37992 5.41815 5.49697 5.51845 5.57544 5.66343 5.79621 6.07528 6.22598 6.41223 6.74297 6.88260 6.96280 7.44365 8.90638 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021947 B = 0.008306 C = 0.007374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.493354 B = 3370.095092 C = 3796.040580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.550 4.550 6 H 0.045 0.955 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.275 1.275 13 N -0.528 5.528 14 C 0.060 3.940 15 C -0.104 4.104 16 C -0.112 4.112 17 C -0.107 4.107 18 H 0.086 0.914 19 C 0.106 3.894 20 H 0.084 0.916 21 C -0.173 4.173 22 O -0.582 6.582 23 C 0.079 3.921 24 H 0.044 0.956 25 H 0.057 0.943 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.027 0.973 29 H 0.262 0.738 30 H 0.007 0.993 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.380 0.620 40 H 0.047 0.953 41 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.248 5.732 13.459 15.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.144 4.144 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.589 4.589 6 H 0.064 0.936 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.769 3.231 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.200 1.200 13 N -0.252 5.252 14 C -0.069 4.069 15 C -0.142 4.142 16 C -0.149 4.149 17 C -0.127 4.127 18 H 0.104 0.896 19 C 0.047 3.953 20 H 0.102 0.898 21 C -0.230 4.230 22 O -0.390 6.390 23 C -0.049 4.049 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.230 0.770 40 H 0.065 0.935 41 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -5.679 4.935 13.293 15.275 hybrid contribution 2.067 0.344 -0.883 2.274 sum -3.612 5.279 12.410 13.961 Atomic orbital electron populations 1.21532 0.96008 0.99576 1.00844 1.21428 0.94661 0.98221 1.00054 1.19033 0.91306 0.91424 0.87040 0.98090 1.21949 0.94175 1.36708 1.06035 0.93639 1.25592 1.01830 0.95020 0.95422 1.69986 1.36389 1.38265 1.10398 0.85852 0.81692 0.78194 0.77345 1.20276 1.20563 1.20027 1.62366 1.57352 1.02448 1.03016 1.21923 0.97117 0.89307 0.98529 1.21525 1.00590 0.98990 0.93099 1.21623 1.00531 0.94219 0.98544 1.21856 1.00922 0.96171 0.93707 0.89599 1.21934 0.80493 0.99301 0.93615 0.89841 1.22418 1.01609 1.02346 0.96661 1.86571 1.25446 1.29917 1.97078 1.21770 0.95571 0.97581 0.89979 0.93692 0.92399 0.94750 0.92129 0.95459 0.92920 0.97422 0.93228 0.90350 0.91070 0.92719 0.88965 0.90525 0.91902 0.90860 0.77019 0.93457 0.96999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.71 71.98 0.70 -4.27 16 2 C -0.11 -5.17 5.09 30.59 0.16 -5.01 16 3 C 0.22 11.25 1.74 44.17 0.08 11.32 16 4 H 0.00 0.07 7.99 -2.38 -0.02 0.05 16 5 C -0.55 -30.76 7.23 25.60 0.19 -30.58 16 6 H 0.05 2.60 5.84 -2.91 -0.02 2.58 16 7 C 0.02 1.19 5.30 84.65 0.45 1.64 16 8 N -0.91 -53.24 11.29 21.45 0.24 -52.99 16 9 Si 0.94 45.07 29.54 68.60 2.03 47.10 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 13 N -0.53 -22.37 4.05 -875.52 -3.54 -25.91 16 14 C 0.06 2.30 5.18 86.33 0.45 2.75 16 15 C -0.10 -2.85 6.09 30.65 0.19 -2.66 16 16 C -0.11 -2.69 4.62 30.67 0.14 -2.55 16 17 C -0.11 -3.02 2.18 -10.74 -0.02 -3.04 16 18 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 19 C 0.11 2.66 3.34 30.59 0.10 2.76 16 20 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 21 C -0.17 -3.03 9.29 71.98 0.67 -2.36 16 22 O -0.58 -16.70 12.76 -148.98 -1.90 -18.60 16 23 C 0.08 3.13 3.97 86.32 0.34 3.47 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 2.19 7.83 -2.39 -0.02 2.18 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 3.36 6.00 -2.39 -0.01 3.34 16 28 H 0.03 1.33 6.31 -2.38 -0.02 1.32 16 29 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 30 H 0.01 0.32 7.27 -2.39 -0.02 0.31 16 31 H 0.05 1.97 8.02 -2.39 -0.02 1.96 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 1.36 6.60 -2.39 -0.02 1.35 16 35 H 0.09 1.62 6.69 -2.39 -0.02 1.61 16 36 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.08 6.62 -2.39 -0.02 1.06 16 39 H 0.38 8.47 7.14 -74.06 -0.53 7.94 16 40 H 0.05 2.01 6.15 -2.39 -0.01 1.99 16 41 H 0.01 0.54 6.04 -2.38 -0.01 0.53 16 Total: -1.00 -63.17 304.67 0.72 -62.44 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.47 Total: 16.48 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 3.43 Total: -28.52 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -3.30 Total: -78.90 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.90 Total: -18.60 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.17 0.72 -62.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708330175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.985 kcal (2) G-P(sol) polarization free energy of solvation -63.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds