Wall clock time and date at job start Mon Mar 30 2020 04:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47168 * 2 1 4 4 N 1.46906 * 109.47264 * 119.99678 * 2 1 3 5 5 C 1.46905 * 111.00175 * 206.56747 * 4 2 1 6 6 C 1.50706 * 109.46616 * 293.95112 * 5 4 2 7 7 H 1.07995 * 120.00250 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99754 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99679 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00045 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47319 * 59.99833 * 10 8 6 12 12 H 1.48498 * 109.47370 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47047 * 299.99941 * 10 8 6 14 14 C 1.46899 * 110.99853 * 330.51574 * 4 2 1 15 15 H 1.09003 * 109.46939 * 53.93649 * 14 4 2 16 16 C 1.52995 * 109.47284 * 293.93691 * 14 4 2 17 17 C 1.53003 * 109.46970 * 179.97438 * 16 14 4 18 18 C 1.52996 * 109.47281 * 59.99798 * 17 16 14 19 19 C 1.52995 * 109.47283 * 300.00009 * 18 17 16 20 20 H 1.08995 * 109.47133 * 300.00114 * 19 18 17 21 21 O 1.42903 * 109.47319 * 179.97438 * 19 18 17 22 22 C 1.52996 * 109.47219 * 173.93334 * 14 4 2 23 23 H 1.08999 * 109.46911 * 307.92445 * 1 2 3 24 24 H 1.08998 * 109.46940 * 67.92710 * 1 2 3 25 25 H 1.08997 * 109.46729 * 187.92682 * 1 2 3 26 26 H 1.08999 * 109.47666 * 239.99606 * 2 1 3 27 27 H 1.09000 * 109.47568 * 190.23458 * 3 2 1 28 28 H 1.09005 * 109.47119 * 310.23383 * 3 2 1 29 29 H 1.09000 * 109.47574 * 70.23219 * 3 2 1 30 30 H 1.08996 * 109.47214 * 53.94559 * 5 4 2 31 31 H 1.08992 * 109.47275 * 173.95330 * 5 4 2 32 32 H 0.97001 * 119.99393 * 179.97438 * 9 8 6 33 33 H 1.08995 * 109.47133 * 299.99569 * 16 14 4 34 34 H 1.09004 * 109.47666 * 60.00032 * 16 14 4 35 35 H 1.09003 * 109.47192 * 299.99920 * 17 16 14 36 36 H 1.08996 * 109.47417 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.47558 * 179.97438 * 18 17 16 38 38 H 1.09003 * 109.46908 * 59.99948 * 18 17 16 39 39 H 0.96702 * 113.99470 * 60.00215 * 21 19 18 40 40 H 1.09002 * 109.47548 * 300.00267 * 22 14 4 41 41 H 1.09003 * 109.46908 * 60.00296 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.3517 -0.2050 1.5819 6 6 4.3495 -0.5827 0.5175 7 1 4.0264 -1.1296 -0.3559 8 6 5.6748 -0.2298 0.6586 9 7 6.0682 0.4367 1.7219 10 14 6.9114 -0.6973 -0.6610 11 1 6.5124 -0.0835 -1.9531 12 1 8.2579 -0.2047 -0.2745 13 1 6.9469 -2.1749 -0.8050 14 6 1.0697 -0.5550 2.3115 15 1 0.0830 -0.8882 1.9896 16 6 0.9973 0.9114 2.7421 17 6 0.0073 1.0546 3.8999 18 6 0.4744 0.1991 5.0792 19 6 0.5467 -1.2672 4.6485 20 1 -0.4398 -1.6003 4.3262 21 8 0.9835 -2.0662 5.7498 22 6 1.5373 -1.4104 3.4906 23 1 -0.3633 0.6316 0.8106 24 1 -0.3633 0.3862 -0.9523 25 1 -0.3633 -1.0178 0.1417 26 1 1.8934 -0.5139 -0.8899 27 1 3.1146 1.4480 -0.1826 28 1 1.5353 2.0063 -0.7846 29 1 1.8335 1.9010 0.9671 30 1 3.3254 0.8796 1.6868 31 1 3.6447 -0.6547 2.5305 32 1 7.0007 0.6846 1.8214 33 1 1.9839 1.2446 3.0640 34 1 0.6641 1.5209 1.9021 35 1 -0.9793 0.7214 3.5776 36 1 -0.0440 2.0991 4.2070 37 1 -0.2307 0.3014 5.9041 38 1 1.4610 0.5322 5.4014 39 1 0.4022 -2.0238 6.5214 40 1 1.5889 -2.4551 3.1838 41 1 2.5240 -1.0771 3.8124 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712705228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:12 Heat of formation + Delta-G solvation = -71.995557 kcal Electronic energy + Delta-G solvation = -19113.254668 eV Core-core repulsion = 16413.025880 eV Total energy + Delta-G solvation = -2700.228787 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14657 -38.53148 -35.80921 -34.77675 -32.70417 -30.86109 -30.18775 -28.33485 -27.48993 -24.30612 -23.40867 -23.04391 -20.90768 -20.01731 -18.27813 -17.95568 -17.03070 -16.56049 -16.34058 -15.75464 -15.36502 -15.21920 -14.88752 -14.41120 -14.10318 -13.81307 -13.44068 -13.30598 -13.02246 -12.88090 -12.71998 -12.69221 -12.60049 -12.31500 -12.15641 -11.96305 -11.77120 -11.71945 -11.41645 -11.29541 -11.04320 -10.78533 -10.66889 -10.50438 -8.73809 -8.15395 -6.23100 1.38061 1.40932 1.48472 2.40871 3.12178 3.16775 3.55672 3.79152 3.95634 4.13088 4.19254 4.23685 4.33213 4.35502 4.44438 4.57935 4.59267 4.64669 4.68218 4.82813 4.87333 5.00439 5.03152 5.12900 5.13869 5.16258 5.22158 5.31229 5.34757 5.38273 5.42139 5.55370 5.58698 5.67661 5.74203 6.17289 6.53039 6.82569 6.94499 6.99194 7.44904 8.94325 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023880 B = 0.007874 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.249583 B = 3555.099191 C = 4169.909433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.088 3.912 3 C -0.179 4.179 4 N -0.542 5.542 5 C 0.208 3.792 6 C -0.513 4.513 7 H 0.054 0.946 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.959 3.041 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.089 3.911 15 H 0.104 0.896 16 C -0.160 4.160 17 C -0.105 4.105 18 C -0.146 4.146 19 C 0.115 3.885 20 H 0.080 0.920 21 O -0.589 6.589 22 C -0.106 4.106 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.059 0.941 30 H -0.012 1.012 31 H -0.006 1.006 32 H 0.261 0.739 33 H 0.029 0.971 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.394 0.606 40 H 0.053 0.947 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.092 1.083 3.396 16.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 C -0.237 4.237 4 N -0.266 5.266 5 C 0.082 3.918 6 C -0.552 4.552 7 H 0.072 0.928 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.785 3.215 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.198 1.198 14 C -0.019 4.019 15 H 0.122 0.878 16 C -0.198 4.198 17 C -0.143 4.143 18 C -0.184 4.184 19 C 0.056 3.944 20 H 0.097 0.903 21 O -0.398 6.398 22 C -0.144 4.144 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.006 0.994 31 H 0.012 0.988 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.060 0.940 39 H 0.244 0.756 40 H 0.072 0.928 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -15.410 0.503 2.930 15.694 hybrid contribution 1.163 0.813 0.088 1.422 sum -14.247 1.316 3.019 14.622 Atomic orbital electron populations 1.22162 0.93043 1.02462 1.02885 1.21488 0.95364 0.92011 0.93195 1.22594 1.01383 0.98029 1.01682 1.62420 1.02794 1.56931 1.04411 1.19435 0.85264 0.92709 0.94426 1.21431 0.93201 1.34476 1.06043 0.92793 1.25808 1.00414 0.95449 0.97927 1.70083 1.16951 1.40835 1.29586 0.85588 0.77802 0.78675 0.79466 1.19292 1.20963 1.19774 1.21751 0.96910 0.93291 0.89960 0.87814 1.22588 0.99185 0.98312 0.99749 1.21424 0.98959 1.00147 0.93814 1.22236 1.01580 0.95200 0.99368 1.21740 0.96745 0.89942 0.85996 0.90264 1.86530 1.55895 1.70151 1.27224 1.21514 0.98317 0.99940 0.94602 0.91134 0.91036 0.91708 0.92713 0.94314 0.91686 0.92226 0.99400 0.98773 0.93024 0.95172 0.89872 0.89386 0.90944 0.88784 0.94015 0.75644 0.92809 0.94973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 7.77 71.98 0.56 -3.39 16 2 C 0.09 3.28 2.84 44.91 0.13 3.41 16 3 C -0.18 -6.88 7.47 71.98 0.54 -6.34 16 4 N -0.54 -23.35 4.71 -850.40 -4.01 -27.35 16 5 C 0.21 11.12 3.32 85.56 0.28 11.40 16 6 C -0.51 -29.75 7.59 25.60 0.19 -29.55 16 7 H 0.05 3.11 7.39 -2.91 -0.02 3.09 16 8 C 0.00 0.09 5.46 84.65 0.46 0.55 16 9 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 10 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 14 C 0.09 3.09 1.71 44.91 0.08 3.16 16 15 H 0.10 3.00 5.78 -2.39 -0.01 2.99 16 16 C -0.16 -5.08 3.14 30.59 0.10 -4.98 16 17 C -0.11 -2.42 5.92 30.59 0.18 -2.24 16 18 C -0.15 -3.50 5.54 30.59 0.17 -3.33 16 19 C 0.11 3.10 3.47 30.61 0.11 3.20 16 20 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 21 O -0.59 -16.35 13.32 -148.98 -1.98 -18.33 16 22 C -0.11 -3.91 4.71 30.61 0.14 -3.77 16 23 H 0.07 1.69 5.14 -2.39 -0.01 1.68 16 24 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.06 1.64 7.42 -2.39 -0.02 1.63 16 26 H 0.05 2.24 7.80 -2.39 -0.02 2.22 16 27 H 0.04 1.82 6.21 -2.39 -0.01 1.81 16 28 H 0.06 2.06 8.11 -2.38 -0.02 2.04 16 29 H 0.06 2.26 4.14 -2.39 -0.01 2.25 16 30 H -0.01 -0.65 4.67 -2.39 -0.01 -0.66 16 31 H -0.01 -0.34 5.91 -2.39 -0.01 -0.36 16 32 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.03 1.21 6.58 -2.39 -0.02 1.19 16 34 H 0.08 2.50 3.88 -2.39 -0.01 2.49 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.39 6.35 9.08 -74.06 -0.67 5.68 16 40 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.03 1.46 6.25 -2.39 -0.01 1.45 16 Total: -1.00 -69.61 294.77 -0.39 -70.00 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.35 Total: 17.06 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 2.94 Total: -31.87 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -3.72 Total: -84.76 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -1.98 Total: -18.33 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -69.61 -0.39 -70.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712705228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.999 kcal (2) G-P(sol) polarization free energy of solvation -69.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds