Wall clock time and date at job start Mon Mar 30 2020 04:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46965 * 2 1 4 4 N 1.46897 * 109.46955 * 119.99790 * 2 1 3 5 5 C 1.46904 * 110.99953 * 204.28923 * 4 2 1 6 6 C 1.50707 * 109.46879 * 293.95491 * 5 4 2 7 7 H 1.08002 * 119.99800 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99784 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00536 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99738 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47301 * 60.00023 * 10 8 6 12 12 H 1.48505 * 109.46946 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47211 * 299.99502 * 10 8 6 14 14 C 1.46906 * 111.00328 * 328.24112 * 4 2 1 15 15 H 1.09000 * 109.46863 * 55.11756 * 14 4 2 16 16 C 1.53003 * 109.46885 * 295.12248 * 14 4 2 17 17 C 1.53001 * 109.47119 * 179.97438 * 16 14 4 18 18 C 1.53003 * 109.46755 * 60.00013 * 17 16 14 19 19 C 1.53003 * 109.47296 * 299.99878 * 18 17 16 20 20 H 1.08997 * 109.46851 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.47237 * 300.00541 * 19 18 17 22 22 C 1.52996 * 109.47208 * 175.12441 * 14 4 2 23 23 H 1.09004 * 109.47405 * 300.00272 * 1 2 3 24 24 H 1.08999 * 109.46733 * 60.00082 * 1 2 3 25 25 H 1.08998 * 109.46765 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47340 * 240.00235 * 2 1 3 27 27 H 1.09006 * 109.47139 * 194.13116 * 3 2 1 28 28 H 1.09003 * 109.47162 * 314.13007 * 3 2 1 29 29 H 1.09003 * 109.47406 * 74.13537 * 3 2 1 30 30 H 1.08996 * 109.47220 * 53.95301 * 5 4 2 31 31 H 1.08999 * 109.47029 * 173.95773 * 5 4 2 32 32 H 0.96997 * 120.00328 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.47274 * 300.00162 * 16 14 4 34 34 H 1.09005 * 109.47210 * 59.99808 * 16 14 4 35 35 H 1.08993 * 109.47358 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46842 * 300.00240 * 17 16 14 37 37 H 1.09000 * 109.47259 * 60.00483 * 18 17 16 38 38 H 1.09000 * 109.46477 * 180.02562 * 18 17 16 39 39 H 0.96708 * 113.99736 * 299.99912 * 21 19 18 40 40 H 1.09002 * 109.47201 * 300.00002 * 22 14 4 41 41 H 1.08999 * 109.47435 * 59.99438 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 3.3737 -0.2437 1.5505 6 6 4.3384 -0.6674 0.4730 7 1 3.9814 -1.2155 -0.3864 8 6 5.6769 -0.3561 0.5848 9 7 6.1117 0.3110 1.6315 10 14 6.8728 -0.8818 -0.7505 11 1 6.4697 -0.2732 -2.0436 12 1 8.2416 -0.4281 -0.3957 13 1 6.8577 -2.3616 -0.8738 14 6 1.0957 -0.5098 2.3269 15 1 0.0971 -0.8346 2.0345 16 6 1.0566 0.9684 2.7198 17 6 0.0939 1.1588 3.8937 18 6 0.5719 0.3267 5.0853 19 6 0.6110 -1.1515 4.6924 20 1 0.9511 -1.7443 5.5415 21 8 -0.6980 -1.5772 4.3086 22 6 1.5743 -1.3417 3.5184 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1007 1.4529 -0.2509 28 1 1.4864 2.0236 -0.7376 29 1 1.8962 1.8788 0.9885 30 1 3.3844 0.8424 1.6412 31 1 3.6699 -0.6906 2.4995 32 1 7.0533 0.5303 1.7100 33 1 2.0552 1.2932 3.0121 34 1 0.7157 1.5611 1.8709 35 1 0.0656 2.2118 4.1733 36 1 -0.9046 0.8340 3.6009 37 1 1.5704 0.6514 5.3781 38 1 -0.1143 0.4620 5.9214 39 1 -1.3619 -1.4847 5.0058 40 1 1.6022 -2.3948 3.2384 41 1 2.5729 -1.0170 3.8106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712705233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:25 Heat of formation + Delta-G solvation = -46.464995 kcal Electronic energy + Delta-G solvation = -19249.549039 eV Core-core repulsion = 16550.427340 eV Total energy + Delta-G solvation = -2699.121699 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.73254 -37.22241 -34.06906 -32.69743 -31.19302 -29.32612 -28.94875 -26.80515 -25.65377 -22.33178 -22.21621 -21.68955 -19.48495 -18.32541 -16.56507 -16.14247 -15.59493 -15.18200 -14.51634 -14.32980 -13.90248 -13.57652 -13.40912 -12.89003 -12.48607 -12.13774 -12.02325 -11.88574 -11.52983 -11.21468 -11.16241 -11.00257 -10.90722 -10.77272 -10.61432 -10.46826 -10.29932 -10.09632 -9.90379 -9.65740 -9.38280 -9.28205 -8.91579 -8.34131 -6.95477 -5.96179 -3.95523 3.36642 3.40472 3.44043 4.47589 4.49452 4.86616 5.03870 5.11194 5.27697 5.39395 5.58945 5.66111 5.72831 5.74505 5.81394 5.84072 5.93332 6.04230 6.08058 6.23206 6.25973 6.31181 6.36320 6.45371 6.47538 6.55800 6.58223 6.66391 6.84491 6.97417 7.07535 7.22782 7.45167 7.56209 7.83131 7.91287 8.24091 8.38591 8.71926 9.12575 9.67698 11.14241 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027887 B = 0.007593 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.824158 B = 3686.932538 C = 4086.686460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.093 3.907 3 C -0.189 4.189 4 N -0.530 5.530 5 C 0.184 3.816 6 C -0.499 4.499 7 H 0.059 0.941 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.893 3.107 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.090 3.910 15 H 0.083 0.917 16 C -0.165 4.165 17 C -0.109 4.109 18 C -0.151 4.151 19 C 0.107 3.893 20 H 0.049 0.951 21 O -0.561 6.561 22 C -0.106 4.106 23 H 0.059 0.941 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.006 0.994 31 H 0.029 0.971 32 H 0.260 0.740 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.367 0.633 40 H 0.071 0.929 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.171 1.084 5.157 13.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.016 4.016 3 C -0.247 4.247 4 N -0.253 5.253 5 C 0.059 3.941 6 C -0.538 4.538 7 H 0.077 0.923 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.721 3.279 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.203 1.203 14 C -0.019 4.019 15 H 0.101 0.899 16 C -0.204 4.204 17 C -0.148 4.148 18 C -0.189 4.189 19 C 0.048 3.952 20 H 0.067 0.933 21 O -0.366 6.366 22 C -0.143 4.143 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.023 0.977 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.212 0.788 40 H 0.090 0.910 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.643 0.510 4.538 12.507 hybrid contribution 0.590 0.829 0.108 1.023 sum -11.053 1.338 4.646 12.064 Atomic orbital electron populations 1.22251 0.96909 1.01436 1.01017 1.21394 0.92329 0.92710 0.95139 1.22778 1.03328 0.97419 1.01213 1.62590 1.03755 1.56668 1.02238 1.19898 0.82853 0.94560 0.96822 1.21147 0.91846 1.34620 1.06217 0.92275 1.24948 0.98286 0.95547 0.95815 1.69940 1.15101 1.40336 1.28660 0.86644 0.80029 0.79041 0.82180 1.20411 1.21500 1.20296 1.21643 0.97457 0.91853 0.90995 0.89936 1.22704 0.99923 0.99853 0.97877 1.21392 0.99644 0.98359 0.95361 1.22240 1.01977 0.96649 0.97999 1.21865 0.83466 0.92801 0.97066 0.93287 1.86593 1.19166 1.87744 1.43072 1.21668 0.97524 1.01507 0.93649 0.92229 0.93511 0.92647 0.90844 0.90399 0.94656 0.91849 0.97683 0.95264 0.93082 0.91382 0.90726 0.93005 0.91955 0.91064 0.92564 0.78770 0.91035 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 7.80 37.16 0.29 -2.28 16 2 C 0.09 1.83 2.82 -67.71 -0.19 1.64 16 3 C -0.19 -3.72 7.39 37.16 0.27 -3.44 16 4 N -0.53 -11.42 4.71 -220.14 -1.04 -12.45 16 5 C 0.18 4.63 3.35 -4.97 -0.02 4.62 16 6 C -0.50 -13.90 7.78 -34.44 -0.27 -14.17 16 7 H 0.06 1.66 7.33 -52.49 -0.38 1.27 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 10 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.09 1.64 1.56 -67.71 -0.11 1.53 16 15 H 0.08 1.51 5.50 -51.93 -0.29 1.22 16 16 C -0.16 -2.79 3.04 -26.73 -0.08 -2.87 16 17 C -0.11 -1.51 5.78 -26.73 -0.15 -1.66 16 18 C -0.15 -1.93 5.64 -26.73 -0.15 -2.08 16 19 C 0.11 1.49 3.78 -26.70 -0.10 1.39 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 O -0.56 -7.45 11.97 -35.23 -0.42 -7.87 16 22 C -0.11 -1.87 4.77 -26.71 -0.13 -2.00 16 23 H 0.06 0.93 4.80 -51.93 -0.25 0.69 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.89 7.92 -51.93 -0.41 0.48 16 26 H 0.07 1.55 7.71 -51.93 -0.40 1.15 16 27 H 0.08 1.79 6.56 -51.93 -0.34 1.44 16 28 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 29 H 0.06 1.23 3.85 -51.93 -0.20 1.03 16 30 H 0.01 0.15 4.71 -51.93 -0.24 -0.10 16 31 H 0.03 0.80 5.86 -51.93 -0.30 0.49 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.07 1.32 6.53 -51.93 -0.34 0.98 16 34 H 0.07 1.26 4.04 -51.93 -0.21 1.05 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.83 7.68 -51.93 -0.40 0.44 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.37 3.17 9.08 45.56 0.41 3.58 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.08 1.61 6.22 -51.93 -0.32 1.28 16 LS Contribution 293.01 15.07 4.42 4.42 Total: -1.00 -29.69 293.01 -7.82 -37.52 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.77 Total: 5.21 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -0.73 Total: -17.88 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.30 Total: -38.19 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.42 Total: -7.87 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.69 -7.82 -37.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712705233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.946 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds