Wall clock time and date at job start Mon Mar 30 2020 04:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46965 * 2 1 4 4 N 1.46897 * 109.46955 * 119.99790 * 2 1 3 5 5 C 1.46904 * 110.99953 * 204.28923 * 4 2 1 6 6 C 1.50707 * 109.46879 * 293.95491 * 5 4 2 7 7 H 1.08002 * 119.99800 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99784 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00536 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99738 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47301 * 60.00023 * 10 8 6 12 12 H 1.48505 * 109.46946 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47211 * 299.99502 * 10 8 6 14 14 C 1.46906 * 111.00328 * 328.24112 * 4 2 1 15 15 H 1.09000 * 109.46863 * 55.11756 * 14 4 2 16 16 C 1.53003 * 109.46885 * 295.12248 * 14 4 2 17 17 C 1.53001 * 109.47119 * 179.97438 * 16 14 4 18 18 C 1.53003 * 109.46755 * 60.00013 * 17 16 14 19 19 C 1.53003 * 109.47296 * 299.99878 * 18 17 16 20 20 H 1.08997 * 109.46851 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.47237 * 300.00541 * 19 18 17 22 22 C 1.52996 * 109.47208 * 175.12441 * 14 4 2 23 23 H 1.09004 * 109.47405 * 300.00272 * 1 2 3 24 24 H 1.08999 * 109.46733 * 60.00082 * 1 2 3 25 25 H 1.08998 * 109.46765 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47340 * 240.00235 * 2 1 3 27 27 H 1.09006 * 109.47139 * 194.13116 * 3 2 1 28 28 H 1.09003 * 109.47162 * 314.13007 * 3 2 1 29 29 H 1.09003 * 109.47406 * 74.13537 * 3 2 1 30 30 H 1.08996 * 109.47220 * 53.95301 * 5 4 2 31 31 H 1.08999 * 109.47029 * 173.95773 * 5 4 2 32 32 H 0.96997 * 120.00328 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.47274 * 300.00162 * 16 14 4 34 34 H 1.09005 * 109.47210 * 59.99808 * 16 14 4 35 35 H 1.08993 * 109.47358 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46842 * 300.00240 * 17 16 14 37 37 H 1.09000 * 109.47259 * 60.00483 * 18 17 16 38 38 H 1.09000 * 109.46477 * 180.02562 * 18 17 16 39 39 H 0.96708 * 113.99736 * 299.99912 * 21 19 18 40 40 H 1.09002 * 109.47201 * 300.00002 * 22 14 4 41 41 H 1.08999 * 109.47435 * 59.99438 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 3.3737 -0.2437 1.5505 6 6 4.3384 -0.6674 0.4730 7 1 3.9814 -1.2155 -0.3864 8 6 5.6769 -0.3561 0.5848 9 7 6.1117 0.3110 1.6315 10 14 6.8728 -0.8818 -0.7505 11 1 6.4697 -0.2732 -2.0436 12 1 8.2416 -0.4281 -0.3957 13 1 6.8577 -2.3616 -0.8738 14 6 1.0957 -0.5098 2.3269 15 1 0.0971 -0.8346 2.0345 16 6 1.0566 0.9684 2.7198 17 6 0.0939 1.1588 3.8937 18 6 0.5719 0.3267 5.0853 19 6 0.6110 -1.1515 4.6924 20 1 0.9511 -1.7443 5.5415 21 8 -0.6980 -1.5772 4.3086 22 6 1.5743 -1.3417 3.5184 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1007 1.4529 -0.2509 28 1 1.4864 2.0236 -0.7376 29 1 1.8962 1.8788 0.9885 30 1 3.3844 0.8424 1.6412 31 1 3.6699 -0.6906 2.4995 32 1 7.0533 0.5303 1.7100 33 1 2.0552 1.2932 3.0121 34 1 0.7157 1.5611 1.8709 35 1 0.0656 2.2118 4.1733 36 1 -0.9046 0.8340 3.6009 37 1 1.5704 0.6514 5.3781 38 1 -0.1143 0.4620 5.9214 39 1 -1.3619 -1.4847 5.0058 40 1 1.6022 -2.3948 3.2384 41 1 2.5729 -1.0170 3.8106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712705233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:25 Heat of formation + Delta-G solvation = -67.996345 kcal Electronic energy + Delta-G solvation = -19250.482709 eV Core-core repulsion = 16550.427340 eV Total energy + Delta-G solvation = -2700.055368 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17536 -38.52760 -35.34286 -34.74076 -32.70601 -30.82117 -30.39937 -28.34713 -27.50951 -24.27986 -23.47820 -23.01887 -20.79167 -19.94234 -18.26745 -17.61768 -17.11136 -16.63462 -16.33002 -15.70988 -15.35581 -15.12468 -14.96610 -14.26329 -14.04536 -13.75815 -13.46512 -13.38740 -12.89056 -12.87048 -12.71241 -12.63824 -12.47947 -12.37640 -12.17965 -12.02572 -11.81346 -11.63357 -11.41936 -11.28825 -11.07148 -10.75667 -10.51489 -10.40135 -8.70533 -8.14379 -6.21709 1.38983 1.41328 1.48983 2.41824 3.16972 3.36393 3.47572 3.86278 3.98234 4.00808 4.23142 4.27908 4.32526 4.42442 4.54564 4.55708 4.66081 4.70566 4.75552 4.81757 4.85387 4.99380 5.03970 5.09575 5.16435 5.19451 5.26721 5.31753 5.36581 5.40001 5.45090 5.53834 5.59977 5.68958 5.75350 6.19066 6.55501 6.86848 6.95805 7.05208 7.46389 8.95063 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027887 B = 0.007593 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.824158 B = 3686.932538 C = 4086.686460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.088 3.912 3 C -0.179 4.179 4 N -0.545 5.545 5 C 0.207 3.793 6 C -0.514 4.514 7 H 0.051 0.949 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.958 3.042 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.093 3.907 15 H 0.092 0.908 16 C -0.157 4.157 17 C -0.104 4.104 18 C -0.147 4.147 19 C 0.117 3.883 20 H 0.065 0.935 21 O -0.572 6.572 22 C -0.108 4.108 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.063 0.937 30 H -0.013 1.013 31 H 0.002 0.998 32 H 0.261 0.739 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.391 0.609 40 H 0.053 0.947 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.209 1.273 5.289 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 C -0.237 4.237 4 N -0.268 5.268 5 C 0.081 3.919 6 C -0.552 4.552 7 H 0.069 0.931 8 C -0.194 4.194 9 N -0.573 5.573 10 Si 0.783 3.217 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.198 1.198 14 C -0.016 4.016 15 H 0.110 0.890 16 C -0.196 4.196 17 C -0.142 4.142 18 C -0.185 4.185 19 C 0.058 3.942 20 H 0.082 0.918 21 O -0.380 6.380 22 C -0.146 4.146 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.005 0.995 31 H 0.019 0.981 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.240 0.760 40 H 0.072 0.928 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.715 0.697 4.680 14.509 hybrid contribution 1.177 0.745 0.066 1.394 sum -12.538 1.441 4.747 13.484 Atomic orbital electron populations 1.22131 0.93499 1.02097 1.02644 1.21444 0.95011 0.92095 0.93465 1.22642 1.01022 0.98028 1.02037 1.62449 1.02904 1.57283 1.04201 1.19448 0.84786 0.92910 0.94765 1.21433 0.92844 1.34438 1.06526 0.93076 1.25759 1.00049 0.95534 0.98009 1.70062 1.15490 1.41340 1.30386 0.85616 0.77800 0.78741 0.79535 1.19593 1.20836 1.19773 1.21683 0.96738 0.93109 0.90054 0.88976 1.22560 0.99129 0.98372 0.99547 1.21374 0.99071 0.99618 0.94172 1.22225 1.02206 0.95315 0.98763 1.21627 0.83258 0.94045 0.95264 0.91754 1.86524 1.19150 1.87749 1.44626 1.21615 0.97624 1.00070 0.95327 0.91375 0.91070 0.92447 0.92895 0.94494 0.91741 0.91834 0.99533 0.98050 0.92987 0.94737 0.90571 0.91543 0.90541 0.92428 0.88908 0.75986 0.92843 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 7.80 71.98 0.56 -3.87 16 2 C 0.09 3.49 2.82 44.92 0.13 3.62 16 3 C -0.18 -7.10 7.39 71.98 0.53 -6.57 16 4 N -0.55 -24.18 4.71 -850.39 -4.01 -28.19 16 5 C 0.21 11.00 3.35 85.56 0.29 11.28 16 6 C -0.51 -29.71 7.78 25.60 0.20 -29.51 16 7 H 0.05 2.97 7.33 -2.91 -0.02 2.95 16 8 C 0.00 0.24 5.46 84.65 0.46 0.70 16 9 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 10 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 14 C 0.09 3.39 1.56 44.91 0.07 3.46 16 15 H 0.09 3.23 5.50 -2.39 -0.01 3.21 16 16 C -0.16 -5.26 3.04 30.60 0.09 -5.17 16 17 C -0.10 -2.61 5.78 30.60 0.18 -2.43 16 18 C -0.15 -3.41 5.64 30.60 0.17 -3.23 16 19 C 0.12 3.05 3.78 30.61 0.12 3.17 16 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 21 O -0.57 -13.42 11.97 -148.98 -1.78 -15.20 16 22 C -0.11 -3.92 4.77 30.61 0.15 -3.77 16 23 H 0.07 1.95 4.80 -2.39 -0.01 1.94 16 24 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.06 1.72 7.92 -2.39 -0.02 1.70 16 26 H 0.05 2.28 7.71 -2.39 -0.02 2.26 16 27 H 0.04 1.74 6.56 -2.38 -0.02 1.72 16 28 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 29 H 0.06 2.50 3.85 -2.39 -0.01 2.49 16 30 H -0.01 -0.72 4.71 -2.39 -0.01 -0.74 16 31 H 0.00 0.09 5.86 -2.39 -0.01 0.08 16 32 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 33 H 0.03 1.38 6.53 -2.39 -0.02 1.36 16 34 H 0.08 2.49 4.04 -2.38 -0.01 2.48 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.74 7.68 -2.39 -0.02 1.72 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.39 5.12 9.08 -74.05 -0.67 4.44 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 2.24 6.22 -2.39 -0.01 2.23 16 Total: -1.00 -66.32 293.01 -0.19 -66.51 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.35 Total: 17.88 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 2.94 Total: -32.33 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -3.72 Total: -84.46 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -1.78 Total: -15.20 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -66.32 -0.19 -66.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712705233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.486 kcal (2) G-P(sol) polarization free energy of solvation -66.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds