Wall clock time and date at job start Mon Mar 30 2020 04:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46839 * 2 1 4 4 H 1.09002 * 109.47378 * 57.54676 * 3 2 1 5 5 C 1.53000 * 109.47335 * 177.54970 * 3 2 1 6 6 C 1.53003 * 109.47251 * 185.39236 * 5 3 2 7 7 H 1.09000 * 109.47076 * 55.02670 * 6 5 3 8 8 C 1.52996 * 109.46956 * 175.02203 * 6 5 3 9 9 O 1.42894 * 109.46861 * 295.02382 * 6 5 3 10 10 N 1.46904 * 109.47385 * 297.54965 * 3 2 1 11 11 C 1.46905 * 110.99574 * 305.55652 * 10 3 2 12 12 C 1.52998 * 109.47004 * 179.29723 * 11 10 3 13 13 C 1.50706 * 115.54682 * 39.60630 * 12 11 10 14 14 H 1.08000 * 120.00050 * 269.75934 * 13 12 11 15 15 C 1.37882 * 120.00007 * 89.76547 * 13 12 11 16 16 N 1.31511 * 119.99854 * 2.88598 * 15 13 12 17 17 Si 1.86796 * 119.99775 * 182.89125 * 15 13 12 18 18 H 1.48501 * 109.47428 * 59.99884 * 17 15 13 19 19 H 1.48499 * 109.47304 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47218 * 299.99537 * 17 15 13 21 21 C 1.52991 * 117.50175 * 253.89612 * 12 11 10 22 22 C 1.53001 * 60.00257 * 252.50908 * 21 12 11 23 23 H 1.09000 * 109.46940 * 176.95443 * 1 2 3 24 24 H 1.09006 * 109.46921 * 56.96652 * 1 2 3 25 25 H 1.08993 * 109.47484 * 296.96122 * 1 2 3 26 26 H 1.08998 * 109.47247 * 119.99353 * 2 1 3 27 27 H 1.08999 * 109.47470 * 240.00210 * 2 1 3 28 28 H 1.08997 * 109.46709 * 305.39265 * 5 3 2 29 29 H 1.08999 * 109.47326 * 65.39150 * 5 3 2 30 30 H 1.09008 * 109.47439 * 60.00095 * 8 6 5 31 31 H 1.09000 * 109.47129 * 179.97438 * 8 6 5 32 32 H 1.08997 * 109.47539 * 300.00441 * 8 6 5 33 33 H 0.96696 * 114.00082 * 299.99546 * 9 6 5 34 34 H 1.00901 * 110.99849 * 69.50070 * 10 3 2 35 35 H 1.09002 * 109.46838 * 299.29797 * 11 10 3 36 36 H 1.08995 * 109.47116 * 59.29934 * 11 10 3 37 37 H 0.97003 * 119.99376 * 180.02562 * 16 15 13 38 38 H 1.08996 * 117.50410 * 0.02562 * 21 12 11 39 39 H 1.09002 * 117.49848 * 145.02030 * 21 12 11 40 40 H 1.08996 * 117.49774 * 252.51246 * 22 21 12 41 41 H 1.08995 * 117.51646 * 107.48036 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6411 1.9690 0.8672 5 6 3.5687 1.4431 0.0617 6 6 4.0731 2.8812 0.1972 7 1 3.6035 3.3511 1.0614 8 6 5.5917 2.8736 0.3835 9 8 3.7417 3.6154 -0.9830 10 7 1.5992 2.1178 -1.2280 11 6 2.0074 1.3621 -2.4197 12 6 1.5166 2.0856 -3.6753 13 6 1.6214 3.5887 -3.6420 14 1 0.7981 4.1792 -3.2680 15 6 2.7682 4.2099 -4.0893 16 7 3.7479 3.4948 -4.5975 17 14 2.9302 6.0672 -3.9733 18 1 2.8266 6.4854 -2.5522 19 1 4.2479 6.4840 -4.5166 20 1 1.8452 6.7088 -4.7585 21 6 0.3293 1.4762 -4.4232 22 6 1.7350 1.3919 -5.0214 23 1 -0.3633 -1.0262 -0.0546 24 1 -0.3633 0.5602 -0.8616 25 1 -0.3634 0.4659 0.9159 26 1 1.8933 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.8978 0.8601 0.9218 29 1 3.9693 1.0021 -0.8510 30 1 6.0615 2.4037 -0.4807 31 1 5.9512 3.8981 0.4796 32 1 5.8446 2.3134 1.2837 33 1 4.1266 3.2532 -1.7927 34 1 0.6015 2.2684 -1.2196 35 1 3.0944 1.2850 -2.4463 36 1 1.5731 0.3631 -2.3829 37 1 4.5549 3.9318 -4.9118 38 1 -0.1026 0.5599 -4.0207 39 1 -0.3765 2.1623 -4.8914 40 1 1.9540 2.0226 -5.8829 41 1 2.2286 0.4202 -5.0125 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716872379.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:39 Heat of formation + Delta-G solvation = -49.106183 kcal Electronic energy + Delta-G solvation = -19156.427578 eV Core-core repulsion = 16457.191348 eV Total energy + Delta-G solvation = -2699.236230 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.81422 -38.04933 -36.77340 -33.68606 -32.34005 -32.17130 -29.32647 -27.39157 -26.20441 -24.66703 -22.78112 -22.01704 -21.16308 -20.26119 -17.95069 -17.03926 -16.72390 -16.41707 -16.01527 -15.83070 -15.44155 -14.78708 -14.49724 -14.30209 -14.22848 -13.55957 -13.35887 -13.08883 -13.08076 -12.75237 -12.63909 -12.59302 -12.34223 -12.16993 -12.01243 -11.78780 -11.70350 -11.52031 -11.24251 -11.03728 -10.71080 -10.36301 -10.13262 -9.73291 -8.57394 -7.84071 -5.86164 1.49188 1.52546 1.62171 2.63095 3.47470 3.51755 3.70100 3.81386 4.05663 4.19180 4.28556 4.32612 4.47441 4.51494 4.54505 4.60857 4.69599 4.81855 4.86633 4.91020 4.95209 4.96526 5.05023 5.10323 5.11166 5.14227 5.27556 5.35447 5.36745 5.43422 5.44921 5.59054 5.78472 5.83592 6.02975 6.58248 6.82636 6.99619 7.11574 7.24988 7.77466 9.23163 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.011611 C = 0.008075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.973391 B = 2410.949981 C = 3466.470404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.156 4.156 3 C 0.091 3.909 4 H 0.077 0.923 5 C -0.135 4.135 6 C 0.102 3.898 7 H 0.088 0.912 8 C -0.179 4.179 9 O -0.547 6.547 10 N -0.645 5.645 11 C 0.128 3.872 12 C 0.028 3.972 13 C -0.447 4.447 14 H 0.037 0.963 15 C 0.051 3.949 16 N -0.909 5.909 17 Si 0.926 3.074 18 H -0.281 1.281 19 H -0.296 1.296 20 H -0.288 1.288 21 C -0.203 4.203 22 C -0.156 4.156 23 H 0.059 0.941 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.367 0.633 34 H 0.328 0.672 35 H 0.040 0.960 36 H 0.007 0.993 37 H 0.250 0.750 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.866 -6.945 10.571 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C -0.019 4.019 4 H 0.095 0.905 5 C -0.173 4.173 6 C 0.043 3.957 7 H 0.106 0.894 8 C -0.237 4.237 9 O -0.352 6.352 10 N -0.274 5.274 11 C -0.001 4.001 12 C 0.027 3.973 13 C -0.486 4.486 14 H 0.055 0.945 15 C -0.147 4.147 16 N -0.550 5.550 17 Si 0.756 3.244 18 H -0.207 1.207 19 H -0.222 1.222 20 H -0.215 1.215 21 C -0.240 4.240 22 C -0.194 4.194 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.214 0.786 34 H 0.146 0.854 35 H 0.058 0.942 36 H 0.025 0.975 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.465 -6.109 10.908 12.511 hybrid contribution 0.065 0.027 -0.751 0.754 sum -0.400 -6.082 10.157 11.846 Atomic orbital electron populations 1.21717 0.95450 1.01721 1.01634 1.22237 0.96659 0.98698 1.01939 1.21613 0.94788 0.92001 0.93503 0.90508 1.22304 0.95730 0.97520 1.01737 1.21813 0.93252 0.91597 0.89041 0.89448 1.22497 0.96932 1.01899 1.02332 1.86677 1.77059 1.55087 1.16332 1.60320 1.18578 1.48591 0.99892 1.21155 0.97777 0.91459 0.89721 1.19079 0.95530 0.93493 0.89188 1.20145 0.99738 0.89768 1.38925 0.94509 1.25041 0.95909 0.98817 0.94943 1.70087 1.06557 1.35128 1.43184 0.86150 0.75923 0.84747 0.77620 1.20673 1.22215 1.21463 1.23082 0.91481 1.01675 1.07767 1.22289 0.97775 0.99542 0.99842 0.92214 0.93985 0.91903 0.90683 0.93136 0.89584 0.93413 0.93574 0.92979 0.90069 0.78632 0.85396 0.94174 0.97503 0.94047 0.89937 0.91285 0.92361 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.71 71.98 0.70 -2.77 16 2 C -0.16 -3.93 4.97 30.60 0.15 -3.78 16 3 C 0.09 2.67 2.55 44.92 0.11 2.79 16 4 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 5 C -0.13 -3.86 4.37 30.60 0.13 -3.72 16 6 C 0.10 3.23 3.59 30.59 0.11 3.34 16 7 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 8 C -0.18 -4.84 9.53 71.98 0.69 -4.16 16 9 O -0.55 -23.22 11.64 -148.98 -1.73 -24.95 16 10 N -0.64 -23.82 3.94 -491.55 -1.94 -25.76 16 11 C 0.13 5.22 4.92 86.30 0.42 5.64 16 12 C 0.03 1.29 1.85 -52.93 -0.10 1.20 16 13 C -0.45 -23.63 8.18 25.60 0.21 -23.42 16 14 H 0.04 2.03 7.81 -2.91 -0.02 2.01 16 15 C 0.05 2.76 5.13 84.66 0.43 3.19 16 16 N -0.91 -49.98 12.33 21.45 0.26 -49.71 16 17 Si 0.93 45.50 29.54 68.60 2.03 47.53 16 18 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 19 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 20 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 21 C -0.20 -8.59 9.88 30.59 0.30 -8.29 16 22 C -0.16 -7.32 8.99 30.60 0.27 -7.04 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.04 1.12 6.80 -2.38 -0.02 1.11 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.43 6.17 -2.39 -0.01 1.42 16 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.05 1.56 6.32 -2.39 -0.02 1.55 16 30 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.37 17.08 8.44 -74.06 -0.63 16.45 16 34 H 0.33 12.21 7.40 -89.69 -0.66 11.55 16 35 H 0.04 1.80 6.06 -2.39 -0.01 1.79 16 36 H 0.01 0.28 5.92 -2.39 -0.01 0.26 16 37 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 38 H 0.08 3.07 8.08 -2.39 -0.02 3.05 16 39 H 0.07 2.97 8.14 -2.39 -0.02 2.96 16 40 H 0.06 3.03 7.96 -2.39 -0.02 3.01 16 41 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -56.30 321.27 1.78 -54.53 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: -0.29 Total: 35.39 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 3.44 Total: -37.02 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -1.67 Total: -75.47 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -1.73 Total: -24.95 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -56.30 1.78 -54.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716872379.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.420 kcal (2) G-P(sol) polarization free energy of solvation -56.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds