Wall clock time and date at job start Mon Mar 30 2020 04:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47186 * 2 1 4 4 H 1.09000 * 109.46758 * 302.76566 * 3 2 1 5 5 C 1.52996 * 109.46890 * 182.76650 * 3 2 1 6 6 C 1.53002 * 109.47009 * 173.80028 * 5 3 2 7 7 H 1.08996 * 109.47157 * 305.23765 * 6 5 3 8 8 C 1.52998 * 109.47546 * 185.23592 * 6 5 3 9 9 O 1.42902 * 109.46973 * 65.23820 * 6 5 3 10 10 N 1.46896 * 109.47093 * 62.76554 * 3 2 1 11 11 C 1.46898 * 111.00412 * 55.00885 * 10 3 2 12 12 C 1.52998 * 109.47390 * 184.94016 * 11 10 3 13 13 C 1.50694 * 115.55195 * 320.35966 * 12 11 10 14 14 H 1.08003 * 119.99577 * 97.68303 * 13 12 11 15 15 C 1.37875 * 120.00373 * 277.68694 * 13 12 11 16 16 N 1.31517 * 119.99987 * 4.49151 * 15 13 12 17 17 Si 1.86795 * 120.00360 * 184.49197 * 15 13 12 18 18 H 1.48506 * 109.47250 * 89.99933 * 17 15 13 19 19 H 1.48496 * 109.47584 * 209.99883 * 17 15 13 20 20 H 1.48500 * 109.46991 * 329.99927 * 17 15 13 21 21 C 1.53005 * 117.49685 * 174.69133 * 12 11 10 22 22 C 1.53009 * 60.03126 * 252.50144 * 21 12 11 23 23 H 1.09004 * 109.47137 * 304.71408 * 1 2 3 24 24 H 1.08995 * 109.47323 * 64.70964 * 1 2 3 25 25 H 1.09000 * 109.47287 * 184.71381 * 1 2 3 26 26 H 1.08997 * 109.47204 * 239.99759 * 2 1 3 27 27 H 1.09008 * 109.46784 * 119.99899 * 2 1 3 28 28 H 1.08996 * 109.47292 * 293.79985 * 5 3 2 29 29 H 1.08996 * 109.47140 * 53.80174 * 5 3 2 30 30 H 1.09002 * 109.46716 * 59.99936 * 8 6 5 31 31 H 1.08997 * 109.47260 * 179.97438 * 8 6 5 32 32 H 1.09002 * 109.47173 * 300.00673 * 8 6 5 33 33 H 0.96696 * 114.00490 * 60.00456 * 9 6 5 34 34 H 1.00901 * 110.99897 * 291.05410 * 10 3 2 35 35 H 1.09006 * 109.46897 * 64.94100 * 11 10 3 36 36 H 1.09001 * 109.47445 * 304.94552 * 11 10 3 37 37 H 0.96996 * 120.00389 * 180.02562 * 16 15 13 38 38 H 1.08999 * 117.49998 * 0.02562 * 21 12 11 39 39 H 1.08998 * 117.49900 * 145.00311 * 21 12 11 40 40 H 1.08992 * 117.49884 * 107.50087 * 22 21 12 41 41 H 1.09001 * 117.49785 * 252.52393 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6367 1.9704 -0.8642 5 6 3.5684 1.4430 -0.0696 6 6 4.0714 2.8796 -0.2254 7 1 3.5935 3.3401 -1.0900 8 6 5.5881 2.8701 -0.4259 9 8 3.7510 3.6265 0.9501 10 7 1.6057 2.1154 1.2314 11 6 2.0316 1.3646 2.4200 12 6 1.4580 2.0269 3.6743 13 6 1.4613 3.5339 3.6729 14 1 0.5677 4.0755 3.4000 15 6 2.6051 4.2211 4.0201 16 7 3.7176 3.5644 4.2665 17 14 2.5747 6.0849 4.1403 18 1 2.2123 6.4859 5.5235 19 1 3.9166 6.6247 3.8040 20 1 1.5709 6.6260 3.1891 21 6 1.6854 1.3212 5.0127 22 6 0.2939 1.3229 4.3762 23 1 -0.3633 0.5853 0.8448 24 1 -0.3634 0.4390 -0.9291 25 1 -0.3634 -1.0242 0.0845 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 3.9740 1.0134 0.8463 29 1 3.8934 0.8496 -0.9242 30 1 5.8325 2.3003 -1.3224 31 1 5.9463 3.8935 -0.5373 32 1 6.0660 2.4095 0.4387 33 1 4.1437 3.2730 1.7599 34 1 0.6068 2.2580 1.2325 35 1 3.1202 1.3608 2.4766 36 1 1.6678 0.3393 2.3518 37 1 4.5221 4.0478 4.5111 38 1 2.2440 0.3853 4.9996 39 1 1.8373 1.9469 5.8922 40 1 -0.0631 0.3881 3.9445 41 1 -0.4694 1.9501 4.8368 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716872384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:47 Heat of formation + Delta-G solvation = -34.068229 kcal Electronic energy + Delta-G solvation = -19155.985468 eV Core-core repulsion = 16457.401333 eV Total energy + Delta-G solvation = -2698.584135 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.36091 -36.37342 -35.26265 -31.68933 -30.90130 -30.83958 -28.03933 -25.44587 -24.54492 -23.47419 -21.03134 -20.68795 -19.54649 -18.68796 -16.21355 -15.37042 -15.23261 -14.72660 -14.51228 -14.29610 -13.92111 -13.29666 -13.06491 -12.79280 -12.65645 -12.19228 -11.96118 -11.69652 -11.53972 -11.25629 -10.93448 -10.79253 -10.72232 -10.56845 -10.47418 -10.33576 -10.21100 -10.04533 -9.82027 -9.27556 -8.89193 -8.68678 -8.18788 -7.91144 -7.07004 -5.80477 -3.79751 3.47525 3.54727 3.60111 4.64564 4.92032 5.12499 5.37885 5.40328 5.43058 5.46653 5.53080 5.57372 5.67370 5.78740 5.85263 6.02836 6.08822 6.12039 6.19724 6.24432 6.27622 6.33938 6.40365 6.46212 6.54252 6.58435 6.71208 6.72950 6.81124 6.90280 7.09942 7.18816 7.54611 7.59741 8.11348 8.27860 8.49912 8.69598 8.95596 9.15030 9.84102 11.29955 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.011534 C = 0.008045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.495626 B = 2427.084891 C = 3479.546525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.165 4.165 3 C 0.092 3.908 4 H 0.068 0.932 5 C -0.142 4.142 6 C 0.111 3.889 7 H 0.080 0.920 8 C -0.187 4.187 9 O -0.526 6.526 10 N -0.630 5.630 11 C 0.108 3.892 12 C 0.051 3.949 13 C -0.454 4.454 14 H 0.053 0.947 15 C 0.085 3.915 16 N -0.890 5.890 17 Si 0.888 3.112 18 H -0.291 1.291 19 H -0.290 1.290 20 H -0.276 1.276 21 C -0.161 4.161 22 C -0.221 4.221 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.383 0.617 34 H 0.330 0.670 35 H 0.066 0.934 36 H -0.005 1.005 37 H 0.253 0.747 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 -5.892 -8.240 10.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.204 4.204 3 C -0.019 4.019 4 H 0.086 0.914 5 C -0.180 4.180 6 C 0.051 3.949 7 H 0.098 0.902 8 C -0.244 4.244 9 O -0.333 6.333 10 N -0.259 5.259 11 C -0.021 4.021 12 C 0.051 3.949 13 C -0.492 4.492 14 H 0.071 0.929 15 C -0.115 4.115 16 N -0.529 5.529 17 Si 0.717 3.283 18 H -0.218 1.218 19 H -0.216 1.216 20 H -0.201 1.201 21 C -0.199 4.199 22 C -0.259 4.259 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.233 0.767 34 H 0.148 0.852 35 H 0.084 0.916 36 H 0.012 0.988 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.100 -5.047 -8.597 9.970 hybrid contribution -0.116 -0.315 0.432 0.546 sum -0.016 -5.362 -8.166 9.769 Atomic orbital electron populations 1.21741 0.96201 1.01074 1.01761 1.22349 0.96083 1.00334 1.01648 1.21529 0.94541 0.90876 0.94957 0.91409 1.22363 0.96115 0.98159 1.01370 1.21546 0.91686 0.91005 0.90689 0.90235 1.22598 0.98793 1.01713 1.01332 1.86672 1.76628 1.53757 1.16230 1.60421 1.18369 1.48009 0.99139 1.21499 0.99835 0.90823 0.89954 1.18960 0.93516 0.94103 0.88347 1.20109 0.96964 0.87941 1.44170 0.92881 1.24670 0.95325 0.96974 0.94570 1.69967 1.00114 1.34664 1.48161 0.86679 0.77191 0.87196 0.77213 1.21845 1.21634 1.20140 1.22495 0.96596 1.00497 1.00338 1.23079 0.92649 1.01100 1.09040 0.92254 0.93133 0.93479 0.92859 0.91602 0.91566 0.92648 0.92949 0.92520 0.92743 0.76713 0.85163 0.91615 0.98772 0.93708 0.92403 0.90227 0.92318 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.75 37.16 0.36 -1.66 16 2 C -0.16 -2.36 5.01 -26.73 -0.13 -2.49 16 3 C 0.09 1.48 2.54 -67.72 -0.17 1.31 16 4 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 5 C -0.14 -2.22 4.36 -26.73 -0.12 -2.34 16 6 C 0.11 1.87 3.58 -26.73 -0.10 1.77 16 7 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 8 C -0.19 -2.72 9.53 37.16 0.35 -2.37 16 9 O -0.53 -11.36 11.71 -35.23 -0.41 -11.78 16 10 N -0.63 -12.20 4.03 -106.73 -0.43 -12.63 16 11 C 0.11 2.26 4.99 -3.83 -0.02 2.24 16 12 C 0.05 1.20 1.61 -155.62 -0.25 0.95 16 13 C -0.45 -11.90 8.14 -34.44 -0.28 -12.18 16 14 H 0.05 1.45 7.82 -52.48 -0.41 1.04 16 15 C 0.09 2.26 5.39 -17.82 -0.10 2.17 16 16 N -0.89 -23.75 12.20 55.43 0.68 -23.07 16 17 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 C -0.16 -3.73 9.57 -26.72 -0.26 -3.98 16 22 C -0.22 -4.77 9.89 -26.69 -0.26 -5.03 16 23 H 0.06 0.88 6.72 -51.93 -0.35 0.53 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.03 6.07 -51.92 -0.32 0.72 16 28 H 0.07 1.15 6.35 -51.93 -0.33 0.82 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.38 8.88 7.77 45.56 0.35 9.23 16 34 H 0.33 6.46 7.28 -39.29 -0.29 6.18 16 35 H 0.07 1.51 6.12 -51.93 -0.32 1.20 16 36 H -0.01 -0.11 5.68 -51.93 -0.30 -0.40 16 37 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 40 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 41 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -26.25 321.07 -7.89 -34.14 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -6.58 Total: 13.26 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -0.97 Total: -21.60 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.25 Total: -35.70 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.41 Total: -11.78 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.25 -7.89 -34.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716872384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.073 kcal (2) G-P(sol) polarization free energy of solvation -26.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds