Wall clock time and date at job start Mon Mar 30 2020 04:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46926 * 2 1 4 4 H 1.08996 * 109.47582 * 54.74684 * 3 2 1 5 5 C 1.50707 * 109.46928 * 174.74955 * 3 2 1 6 6 H 1.08002 * 120.00040 * 95.33902 * 5 3 2 7 7 C 1.37871 * 120.00007 * 275.33880 * 5 3 2 8 8 N 1.31521 * 120.00130 * 355.10704 * 7 5 3 9 9 Si 1.86800 * 120.00163 * 175.10758 * 7 5 3 10 10 H 1.48501 * 109.46980 * 60.00050 * 9 7 5 11 11 H 1.48495 * 109.47192 * 300.00064 * 9 7 5 12 12 H 1.48498 * 109.47077 * 180.02562 * 9 7 5 13 13 N 1.46905 * 109.46894 * 294.74473 * 3 2 1 14 14 C 1.47840 * 111.00223 * 295.84489 * 13 3 2 15 15 C 1.54899 * 104.79606 * 213.63617 * 14 13 3 16 16 C 1.55144 * 101.65657 * 37.07081 * 15 14 13 17 17 H 1.08993 * 110.85369 * 82.79421 * 16 15 14 18 18 C 1.52997 * 110.71035 * 205.96646 * 16 15 14 19 19 C 1.52996 * 109.47115 * 178.95864 * 18 16 15 20 20 C 1.52999 * 109.46988 * 298.95667 * 18 16 15 21 21 O 1.42900 * 109.47353 * 58.95340 * 18 16 15 22 22 C 1.47446 * 110.99628 * 175.00000 * 13 3 2 23 23 H 1.08998 * 109.47295 * 59.99904 * 1 2 3 24 24 H 1.09003 * 109.47191 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47169 * 300.00064 * 1 2 3 26 26 H 1.08999 * 109.47169 * 239.99936 * 2 1 3 27 27 H 1.09000 * 109.47161 * 119.99327 * 2 1 3 28 28 H 0.97006 * 119.99469 * 5.12812 * 8 7 5 29 29 H 1.09003 * 110.37628 * 332.46472 * 14 13 3 30 30 H 1.09006 * 110.37511 * 94.80594 * 14 13 3 31 31 H 1.09004 * 110.99094 * 278.98079 * 15 14 13 32 32 H 1.09002 * 110.99300 * 155.16477 * 15 14 13 33 33 H 1.08992 * 109.47604 * 59.99860 * 19 18 16 34 34 H 1.09004 * 109.47095 * 180.02562 * 19 18 16 35 35 H 1.09005 * 109.47010 * 299.99211 * 19 18 16 36 36 H 1.09001 * 109.47490 * 65.03197 * 20 18 16 37 37 H 1.09000 * 109.47500 * 185.03441 * 20 18 16 38 38 H 1.09004 * 109.47094 * 305.03618 * 20 18 16 39 39 H 0.96697 * 113.99685 * 300.00525 * 21 18 16 40 40 H 1.09001 * 109.88825 * 242.66431 * 22 13 3 41 41 H 1.08998 * 109.88991 * 3.85670 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6018 1.9829 0.8391 5 6 3.5414 1.4445 0.1300 6 1 4.1598 1.5038 -0.7534 7 6 4.1254 1.3707 1.3767 8 7 3.3754 1.3956 2.4568 9 14 5.9820 1.2352 1.5318 10 1 6.6188 2.4225 0.9071 11 1 6.4478 0.0044 0.8440 12 1 6.3554 1.1707 2.9677 13 7 1.6565 2.0974 -1.2579 14 6 2.3136 1.4508 -2.4136 15 6 2.5705 2.6020 -3.4177 16 6 2.9373 3.7715 -2.4665 17 1 3.9879 3.7238 -2.1802 18 6 2.6163 5.1187 -3.1166 19 6 2.9641 6.2491 -2.1461 20 6 3.4380 5.2755 -4.3976 21 8 1.2241 5.1748 -3.4340 22 6 2.0272 3.5245 -1.2449 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 2.4087 1.3908 2.3762 29 1 3.2560 0.9958 -2.1087 30 1 1.6551 0.7024 -2.8547 31 1 1.6704 2.8305 -3.9884 32 1 3.4016 2.3631 -4.0813 33 1 4.0259 6.2064 -1.9040 34 1 2.7349 7.2089 -2.6091 35 1 2.3785 6.1375 -1.2335 36 1 3.1267 4.5242 -5.1234 37 1 3.2774 6.2703 -4.8130 38 1 4.4957 5.1435 -4.1693 39 1 0.9323 4.4856 -4.0464 40 1 1.1314 4.1410 -1.3193 41 1 2.5665 3.7592 -0.3273 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721851052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:14 Heat of formation + Delta-G solvation = -66.672124 kcal Electronic energy + Delta-G solvation = -19070.567207 eV Core-core repulsion = 16370.569261 eV Total energy + Delta-G solvation = -2699.997946 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.47071 -37.04596 -33.96686 -32.21005 -31.56792 -29.46015 -28.06206 -26.86546 -25.66164 -23.09682 -21.59171 -21.09807 -19.42454 -19.21441 -16.79683 -16.39437 -15.48311 -15.03107 -14.50979 -13.79415 -13.72343 -13.39989 -12.87920 -12.68276 -12.53057 -12.24054 -12.18635 -11.99647 -11.74337 -11.54468 -11.46987 -10.99065 -10.90137 -10.73988 -10.62249 -10.33266 -10.18490 -10.11076 -10.00810 -9.84112 -9.57255 -9.42341 -8.88023 -8.37798 -7.01097 -6.33927 -4.10774 3.38157 3.39895 3.58303 4.42795 4.48802 4.90296 4.95089 5.11058 5.14894 5.34044 5.44582 5.56562 5.69506 5.74642 5.87672 5.93653 6.01980 6.09268 6.15181 6.18931 6.21426 6.28974 6.36920 6.41482 6.45470 6.55707 6.76914 6.78785 6.86469 6.90600 6.96941 7.13954 7.36045 7.40866 7.87769 7.98576 8.12567 8.31251 8.57283 8.82435 9.63078 10.99686 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.008942 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.761625 B = 3130.402705 C = 3873.815459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C 0.189 3.811 4 H 0.040 0.960 5 C -0.619 4.619 6 H 0.052 0.948 7 C 0.026 3.974 8 N -0.909 5.909 9 Si 1.060 2.940 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.283 1.283 13 N -0.522 5.522 14 C 0.044 3.956 15 C -0.124 4.124 16 C -0.128 4.128 17 H 0.080 0.920 18 C 0.136 3.864 19 C -0.137 4.137 20 C -0.175 4.175 21 O -0.557 6.557 22 C 0.065 3.935 23 H 0.055 0.945 24 H 0.028 0.972 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.271 0.729 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.371 0.629 40 H 0.065 0.935 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.896 4.552 -11.262 12.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C 0.081 3.919 4 H 0.058 0.942 5 C -0.658 4.658 6 H 0.070 0.930 7 C -0.180 4.180 8 N -0.545 5.545 9 Si 0.889 3.111 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.208 1.208 13 N -0.246 5.246 14 C -0.084 4.084 15 C -0.162 4.162 16 C -0.147 4.147 17 H 0.098 0.902 18 C 0.095 3.905 19 C -0.195 4.195 20 C -0.232 4.232 21 O -0.364 6.364 22 C -0.064 4.064 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.219 0.781 40 H 0.083 0.917 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.185 4.958 -9.763 10.951 hybrid contribution -0.179 -0.521 -1.401 1.506 sum -0.364 4.437 -11.164 12.019 Atomic orbital electron populations 1.21739 0.98086 0.98840 1.01244 1.21628 0.93106 0.99494 1.00139 1.19613 0.94085 0.90505 0.87655 0.94225 1.22460 0.92304 1.56015 0.95043 0.92977 1.25684 1.06519 0.93451 0.92297 1.70793 1.07306 1.45947 1.30406 0.83672 0.74920 0.76429 0.76112 1.21640 1.21539 1.20789 1.63910 1.55228 1.01429 1.04015 1.22938 0.98696 0.95776 0.90991 1.22721 0.99848 0.96189 0.97487 1.23002 1.01143 0.93663 0.96925 0.90200 1.21077 0.81066 0.94831 0.93478 1.21736 1.01622 0.96870 0.99242 1.22478 1.00893 1.01813 0.98035 1.86518 1.24440 1.56723 1.68716 1.22527 0.96759 0.90621 0.96457 0.92622 0.95240 0.94047 0.93933 0.93033 0.91722 0.91812 0.92532 0.92115 0.92114 0.91373 0.92531 0.91486 0.92438 0.92400 0.91828 0.78080 0.91709 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.80 37.15 0.36 -2.42 16 2 C -0.11 -2.38 5.32 -26.73 -0.14 -2.52 16 3 C 0.19 4.58 1.28 -68.86 -0.09 4.49 16 4 H 0.04 1.08 6.67 -51.93 -0.35 0.74 16 5 C -0.62 -16.32 6.64 -34.44 -0.23 -16.55 16 6 H 0.05 1.38 6.00 -52.49 -0.32 1.07 16 7 C 0.03 0.72 5.45 -17.82 -0.10 0.62 16 8 N -0.91 -26.68 13.63 55.43 0.76 -25.93 16 9 Si 1.06 24.70 29.91 -169.99 -5.08 19.61 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.52 -11.03 4.63 -224.67 -1.04 -12.07 16 14 C 0.04 0.84 5.16 -2.30 -0.01 0.83 16 15 C -0.12 -1.92 5.45 -24.60 -0.13 -2.05 16 16 C -0.13 -2.12 2.34 -88.79 -0.21 -2.33 16 17 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 18 C 0.14 1.92 0.82 -90.62 -0.07 1.85 16 19 C -0.14 -1.92 8.68 37.16 0.32 -1.59 16 20 C -0.17 -2.05 8.51 37.16 0.32 -1.73 16 21 O -0.56 -8.13 11.89 -35.23 -0.42 -8.55 16 22 C 0.06 1.29 5.03 -2.83 -0.01 1.28 16 23 H 0.05 1.07 7.76 -51.93 -0.40 0.67 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.94 7.13 -51.93 -0.37 0.57 16 27 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.27 7.98 6.66 -40.82 -0.27 7.71 16 29 H 0.06 1.37 5.56 -51.93 -0.29 1.08 16 30 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 31 H 0.06 0.83 6.20 -51.93 -0.32 0.51 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.02 7.42 -51.93 -0.39 0.64 16 36 H 0.06 0.62 7.49 -51.93 -0.39 0.23 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.37 4.49 7.09 45.56 0.32 4.82 16 40 H 0.06 1.29 6.98 -51.93 -0.36 0.93 16 41 H 0.06 1.37 7.06 -51.93 -0.37 1.01 16 LS Contribution 309.27 15.07 4.66 4.66 Total: -1.00 -28.60 309.27 -7.64 -36.24 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.52 Total: 6.16 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 0.00 Total: -20.13 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.29 Total: -38.00 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.42 Total: -8.55 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.08 Total: 19.61 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.60 -7.64 -36.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721851052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.433 kcal (2) G-P(sol) polarization free energy of solvation -28.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds