Wall clock time and date at job start Mon Mar 30 2020 04:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46926 * 2 1 4 4 H 1.08996 * 109.47582 * 54.74684 * 3 2 1 5 5 C 1.50707 * 109.46928 * 174.74955 * 3 2 1 6 6 H 1.08002 * 120.00040 * 95.33902 * 5 3 2 7 7 C 1.37871 * 120.00007 * 275.33880 * 5 3 2 8 8 N 1.31521 * 120.00130 * 355.10704 * 7 5 3 9 9 Si 1.86800 * 120.00163 * 175.10758 * 7 5 3 10 10 H 1.48501 * 109.46980 * 60.00050 * 9 7 5 11 11 H 1.48495 * 109.47192 * 300.00064 * 9 7 5 12 12 H 1.48498 * 109.47077 * 180.02562 * 9 7 5 13 13 N 1.46905 * 109.46894 * 294.74473 * 3 2 1 14 14 C 1.47840 * 111.00223 * 295.84489 * 13 3 2 15 15 C 1.54899 * 104.79606 * 213.63617 * 14 13 3 16 16 C 1.55144 * 101.65657 * 37.07081 * 15 14 13 17 17 H 1.08993 * 110.85369 * 82.79421 * 16 15 14 18 18 C 1.52997 * 110.71035 * 205.96646 * 16 15 14 19 19 C 1.52996 * 109.47115 * 178.95864 * 18 16 15 20 20 C 1.52999 * 109.46988 * 298.95667 * 18 16 15 21 21 O 1.42900 * 109.47353 * 58.95340 * 18 16 15 22 22 C 1.47446 * 110.99628 * 175.00000 * 13 3 2 23 23 H 1.08998 * 109.47295 * 59.99904 * 1 2 3 24 24 H 1.09003 * 109.47191 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47169 * 300.00064 * 1 2 3 26 26 H 1.08999 * 109.47169 * 239.99936 * 2 1 3 27 27 H 1.09000 * 109.47161 * 119.99327 * 2 1 3 28 28 H 0.97006 * 119.99469 * 5.12812 * 8 7 5 29 29 H 1.09003 * 110.37628 * 332.46472 * 14 13 3 30 30 H 1.09006 * 110.37511 * 94.80594 * 14 13 3 31 31 H 1.09004 * 110.99094 * 278.98079 * 15 14 13 32 32 H 1.09002 * 110.99300 * 155.16477 * 15 14 13 33 33 H 1.08992 * 109.47604 * 59.99860 * 19 18 16 34 34 H 1.09004 * 109.47095 * 180.02562 * 19 18 16 35 35 H 1.09005 * 109.47010 * 299.99211 * 19 18 16 36 36 H 1.09001 * 109.47490 * 65.03197 * 20 18 16 37 37 H 1.09000 * 109.47500 * 185.03441 * 20 18 16 38 38 H 1.09004 * 109.47094 * 305.03618 * 20 18 16 39 39 H 0.96697 * 113.99685 * 300.00525 * 21 18 16 40 40 H 1.09001 * 109.88825 * 242.66431 * 22 13 3 41 41 H 1.08998 * 109.88991 * 3.85670 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6018 1.9829 0.8391 5 6 3.5414 1.4445 0.1300 6 1 4.1598 1.5038 -0.7534 7 6 4.1254 1.3707 1.3767 8 7 3.3754 1.3956 2.4568 9 14 5.9820 1.2352 1.5318 10 1 6.6188 2.4225 0.9071 11 1 6.4478 0.0044 0.8440 12 1 6.3554 1.1707 2.9677 13 7 1.6565 2.0974 -1.2579 14 6 2.3136 1.4508 -2.4136 15 6 2.5705 2.6020 -3.4177 16 6 2.9373 3.7715 -2.4665 17 1 3.9879 3.7238 -2.1802 18 6 2.6163 5.1187 -3.1166 19 6 2.9641 6.2491 -2.1461 20 6 3.4380 5.2755 -4.3976 21 8 1.2241 5.1748 -3.4340 22 6 2.0272 3.5245 -1.2449 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 2.4087 1.3908 2.3762 29 1 3.2560 0.9958 -2.1087 30 1 1.6551 0.7024 -2.8547 31 1 1.6704 2.8305 -3.9884 32 1 3.4016 2.3631 -4.0813 33 1 4.0259 6.2064 -1.9040 34 1 2.7349 7.2089 -2.6091 35 1 2.3785 6.1375 -1.2335 36 1 3.1267 4.5242 -5.1234 37 1 3.2774 6.2703 -4.8130 38 1 4.4957 5.1435 -4.1693 39 1 0.9323 4.4856 -4.0464 40 1 1.1314 4.1410 -1.3193 41 1 2.5665 3.7592 -0.3273 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721851052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:14 Heat of formation + Delta-G solvation = -86.134106 kcal Electronic energy + Delta-G solvation = -19071.411141 eV Core-core repulsion = 16370.569261 eV Total energy + Delta-G solvation = -2700.841881 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.88521 -38.54214 -35.66896 -33.81504 -33.12168 -30.98266 -29.46652 -28.04499 -27.54418 -25.01522 -22.90332 -22.74648 -21.06473 -20.67814 -18.68737 -17.71395 -17.04613 -16.50856 -15.82609 -15.69475 -15.15276 -15.04486 -14.48304 -14.31180 -13.94075 -13.60591 -13.49283 -13.25161 -13.08763 -12.93366 -12.79258 -12.65259 -12.51242 -12.43288 -12.12243 -12.02809 -11.95807 -11.56988 -11.56175 -11.47117 -11.23830 -10.84534 -10.68878 -10.48868 -8.87650 -8.48719 -6.30369 1.47423 1.54163 1.72673 2.54035 3.19421 3.35200 3.46736 3.66572 3.76966 3.99132 4.16641 4.26852 4.39771 4.44905 4.50390 4.61518 4.68169 4.72251 4.75887 4.88365 4.90134 4.92441 4.98559 5.05892 5.11374 5.13081 5.17294 5.21742 5.25145 5.35696 5.39672 5.44415 5.51386 5.59064 5.97569 6.08611 6.50724 6.58700 6.64403 6.90445 7.51295 8.78876 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.008942 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.761625 B = 3130.402705 C = 3873.815459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 C 0.193 3.807 4 H 0.000 1.000 5 C -0.613 4.613 6 H 0.051 0.949 7 C -0.027 4.027 8 N -0.938 5.938 9 Si 1.103 2.897 10 H -0.274 1.274 11 H -0.272 1.272 12 H -0.288 1.288 13 N -0.523 5.523 14 C 0.040 3.960 15 C -0.111 4.111 16 C -0.120 4.120 17 H 0.062 0.938 18 C 0.141 3.859 19 C -0.141 4.141 20 C -0.168 4.168 21 O -0.568 6.568 22 C 0.069 3.931 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.031 0.969 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.257 0.743 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.383 0.617 40 H 0.065 0.935 41 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 4.685 -14.125 14.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.137 4.137 3 C 0.085 3.915 4 H 0.018 0.982 5 C -0.652 4.652 6 H 0.069 0.931 7 C -0.226 4.226 8 N -0.576 5.576 9 Si 0.926 3.074 10 H -0.199 1.199 11 H -0.197 1.197 12 H -0.214 1.214 13 N -0.246 5.246 14 C -0.088 4.088 15 C -0.148 4.148 16 C -0.140 4.140 17 H 0.081 0.919 18 C 0.101 3.899 19 C -0.198 4.198 20 C -0.226 4.226 21 O -0.377 6.377 22 C -0.059 4.059 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.233 0.767 40 H 0.083 0.917 41 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 0.162 5.087 -12.662 13.646 hybrid contribution -0.358 -0.544 -0.528 0.838 sum -0.196 4.543 -13.189 13.951 Atomic orbital electron populations 1.21611 0.95456 1.00530 1.01138 1.21469 0.95422 0.97833 0.98951 1.19415 0.92807 0.91254 0.87996 0.98195 1.22723 0.93595 1.54183 0.94725 0.93115 1.26993 1.10127 0.93090 0.92377 1.70909 1.06613 1.48802 1.31300 0.83107 0.70637 0.77636 0.75997 1.19938 1.19736 1.21378 1.63872 1.55452 1.01897 1.03389 1.23000 0.97451 0.97318 0.91027 1.22702 1.02005 0.93452 0.96676 1.22919 0.99109 0.96216 0.95772 0.91922 1.21026 0.81507 0.92849 0.94557 1.21780 1.01599 0.97945 0.98523 1.22405 1.00458 1.03103 0.96585 1.86513 1.24604 1.57336 1.69225 1.22428 0.97026 0.90047 0.96405 0.91871 0.92617 0.94938 0.93266 0.95875 0.93246 0.94484 0.91119 0.89419 0.89718 0.90875 0.90912 0.93827 0.90919 0.91229 0.91499 0.76704 0.91704 0.96623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 9.80 71.98 0.71 -4.31 16 2 C -0.10 -4.51 5.32 30.59 0.16 -4.34 16 3 C 0.19 9.68 1.28 44.17 0.06 9.74 16 4 H 0.00 0.00 6.67 -2.39 -0.02 -0.01 16 5 C -0.61 -33.16 6.64 25.60 0.17 -32.99 16 6 H 0.05 2.72 6.00 -2.91 -0.02 2.71 16 7 C -0.03 -1.52 5.45 84.65 0.46 -1.06 16 8 N -0.94 -57.42 13.63 21.45 0.29 -57.13 16 9 Si 1.10 50.25 29.91 68.60 2.05 52.30 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 13 N -0.52 -22.12 4.63 -864.72 -4.01 -26.13 16 14 C 0.04 1.45 5.16 86.77 0.45 1.90 16 15 C -0.11 -3.06 5.45 31.98 0.17 -2.88 16 16 C -0.12 -3.83 2.34 -9.61 -0.02 -3.85 16 17 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 18 C 0.14 3.66 0.82 -10.80 -0.01 3.65 16 19 C -0.14 -3.79 8.68 71.98 0.62 -3.17 16 20 C -0.17 -3.30 8.51 71.98 0.61 -2.68 16 21 O -0.57 -15.04 11.89 -148.98 -1.77 -16.81 16 22 C 0.07 2.82 5.03 86.65 0.44 3.25 16 23 H 0.06 2.33 7.76 -2.39 -0.02 2.31 16 24 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 2.16 7.13 -2.39 -0.02 2.14 16 27 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.26 16.03 6.66 -92.70 -0.62 15.42 16 29 H 0.04 1.56 5.56 -2.39 -0.01 1.54 16 30 H 0.07 2.38 8.10 -2.38 -0.02 2.36 16 31 H 0.09 1.99 6.20 -2.39 -0.01 1.98 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.35 7.42 -2.38 -0.02 1.33 16 36 H 0.07 1.22 7.49 -2.39 -0.02 1.20 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.38 7.83 7.09 -74.06 -0.52 7.31 16 40 H 0.06 2.62 6.98 -2.39 -0.02 2.60 16 41 H 0.02 0.75 7.06 -2.39 -0.02 0.73 16 Total: -1.00 -63.92 309.27 1.00 -62.92 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.62 Total: 21.58 kcal Atomic # 6 Polarization: -40.56 SS G_CDS: 3.82 Total: -36.74 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -3.71 Total: -83.26 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -1.77 Total: -16.81 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.05 Total: 52.30 kcal Total: -63.92 1.00 -62.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721851052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.213 kcal (2) G-P(sol) polarization free energy of solvation -63.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds