Wall clock time and date at job start Mon Mar 30 2020 04:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47256 * 2 1 4 4 H 1.08994 * 109.47234 * 305.04310 * 3 2 1 5 5 C 1.50699 * 109.47446 * 185.03858 * 3 2 1 6 6 H 1.08001 * 120.00206 * 302.93497 * 5 3 2 7 7 C 1.37878 * 119.99865 * 122.93431 * 5 3 2 8 8 N 1.31520 * 120.00132 * 172.91100 * 7 5 3 9 9 Si 1.86798 * 120.00143 * 352.90528 * 7 5 3 10 10 H 1.48499 * 109.47109 * 84.72424 * 9 7 5 11 11 H 1.48500 * 109.47549 * 204.72616 * 9 7 5 12 12 H 1.48508 * 109.47243 * 324.72649 * 9 7 5 13 13 N 1.46901 * 109.47126 * 65.04007 * 3 2 1 14 14 C 1.47852 * 110.99621 * 63.25178 * 13 3 2 15 15 C 1.54908 * 104.79468 * 146.36713 * 14 13 3 16 16 C 1.55141 * 101.65286 * 322.92860 * 15 14 13 17 17 H 1.08998 * 110.70696 * 277.27390 * 16 15 14 18 18 C 1.53005 * 110.70721 * 154.03557 * 16 15 14 19 19 C 1.53001 * 109.46558 * 66.40171 * 18 16 15 20 20 C 1.52998 * 109.47128 * 186.39842 * 18 16 15 21 21 O 1.42894 * 109.46950 * 306.40316 * 18 16 15 22 22 C 1.47442 * 111.00265 * 184.09454 * 13 3 2 23 23 H 1.09000 * 109.47192 * 59.99903 * 1 2 3 24 24 H 1.08998 * 109.47231 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47283 * 299.99964 * 1 2 3 26 26 H 1.09001 * 109.47283 * 240.00036 * 2 1 3 27 27 H 1.09000 * 109.47192 * 120.00097 * 2 1 3 28 28 H 0.96994 * 119.99751 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.37572 * 265.19292 * 14 13 3 30 30 H 1.08995 * 110.37609 * 27.42635 * 14 13 3 31 31 H 1.08999 * 110.99106 * 204.83826 * 15 14 13 32 32 H 1.08997 * 110.99337 * 81.01887 * 15 14 13 33 33 H 1.08994 * 109.47555 * 60.00298 * 19 18 16 34 34 H 1.09006 * 109.46799 * 180.02562 * 19 18 16 35 35 H 1.08994 * 109.47290 * 299.99457 * 19 18 16 36 36 H 1.09005 * 109.46613 * 60.00185 * 20 18 16 37 37 H 1.08995 * 109.47240 * 179.97438 * 20 18 16 38 38 H 1.09000 * 109.47534 * 300.00665 * 20 18 16 39 39 H 0.96699 * 114.00204 * 299.99535 * 21 18 16 40 40 H 1.09004 * 109.88697 * 117.33982 * 22 13 3 41 41 H 1.08994 * 110.02073 * 356.22272 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6048 1.9817 -0.8413 5 6 3.5418 1.4443 -0.1248 6 1 4.1443 0.9137 0.5976 7 6 4.1465 2.1235 -1.1612 8 7 5.4559 2.2433 -1.1935 9 14 3.1063 2.8732 -2.5195 10 1 2.6332 4.2159 -2.0968 11 1 3.9217 3.0018 -3.7539 12 1 1.9368 1.9981 -2.7877 13 7 1.6522 2.0989 1.2556 14 6 2.2883 1.4401 2.4164 15 6 2.5502 2.5849 3.4266 16 6 2.9427 3.7519 2.4828 17 1 3.9955 3.6879 2.2079 18 6 2.6331 5.1016 3.1336 19 6 3.5400 5.3014 4.3495 20 6 2.8801 6.2236 2.1232 21 8 1.2662 5.1274 3.5495 22 6 2.0422 3.5208 1.2509 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8813 2.7207 -1.9228 29 1 1.6152 0.6995 2.8483 30 1 3.2266 0.9716 2.1196 31 1 3.3709 2.3329 4.0981 32 1 1.6473 2.8240 3.9884 33 1 4.5826 5.2817 4.0322 34 1 3.3192 6.2627 4.8134 35 1 3.3641 4.5021 5.0693 36 1 2.2339 6.0812 1.2570 37 1 2.6590 7.1851 2.5867 38 1 3.9227 6.2039 1.8059 39 1 0.6333 5.0065 2.8285 40 1 1.1541 4.1492 1.3178 41 1 2.5934 3.7536 0.3399 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721851054.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:21 Heat of formation + Delta-G solvation = -62.597047 kcal Electronic energy + Delta-G solvation = -19232.147456 eV Core-core repulsion = 16532.326218 eV Total energy + Delta-G solvation = -2699.821237 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.38517 -36.97466 -33.71907 -32.19757 -31.84217 -29.45624 -28.08219 -26.83713 -26.44575 -22.96807 -21.44533 -21.16248 -19.32275 -18.66859 -17.08608 -16.35808 -15.38883 -15.11961 -14.37683 -14.23162 -13.64640 -13.06901 -12.84724 -12.71575 -12.44007 -12.37569 -12.00571 -11.99370 -11.97153 -11.60356 -11.42900 -11.27649 -10.99401 -10.86563 -10.71460 -10.31165 -10.11047 -10.07609 -9.84952 -9.68768 -9.61482 -9.36838 -9.17116 -8.64151 -7.09155 -6.18476 -4.19511 3.18548 3.29017 3.31415 4.30810 4.52360 4.97567 5.04166 5.11758 5.25842 5.31837 5.61792 5.67328 5.83110 5.93643 5.97433 5.99328 6.04179 6.08342 6.15675 6.23751 6.26272 6.33322 6.41721 6.45675 6.53768 6.58109 6.64249 6.72439 6.77480 6.89152 6.96902 7.06803 7.19529 7.24998 7.61405 7.97920 8.04547 8.29159 8.44357 8.87181 9.45814 10.94010 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020446 B = 0.010179 C = 0.008268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.144924 B = 2750.195259 C = 3385.686176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 C 0.164 3.836 4 H 0.043 0.957 5 C -0.535 4.535 6 H 0.076 0.924 7 C 0.079 3.921 8 N -0.894 5.894 9 Si 0.870 3.130 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.265 1.265 13 N -0.524 5.524 14 C 0.047 3.953 15 C -0.117 4.117 16 C -0.125 4.125 17 H 0.086 0.914 18 C 0.136 3.864 19 C -0.135 4.135 20 C -0.178 4.178 21 O -0.562 6.562 22 C 0.060 3.940 23 H 0.039 0.961 24 H 0.032 0.968 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.264 0.736 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.374 0.626 40 H 0.046 0.954 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.115 4.116 6.421 9.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C 0.057 3.943 4 H 0.061 0.939 5 C -0.574 4.574 6 H 0.094 0.906 7 C -0.125 4.125 8 N -0.532 5.532 9 Si 0.697 3.303 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.248 5.248 14 C -0.081 4.081 15 C -0.155 4.155 16 C -0.145 4.145 17 H 0.104 0.896 18 C 0.096 3.904 19 C -0.192 4.192 20 C -0.236 4.236 21 O -0.369 6.369 22 C -0.069 4.069 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.223 0.777 40 H 0.064 0.936 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.232 4.225 6.911 10.220 hybrid contribution 0.381 0.402 -1.644 1.734 sum -5.851 4.627 5.267 9.131 Atomic orbital electron populations 1.21754 0.97717 0.99207 1.01452 1.21568 0.93575 0.98503 1.00661 1.19932 0.94377 0.91340 0.88642 0.93878 1.21497 0.90669 1.32806 1.12448 0.90648 1.25091 0.94678 0.95212 0.97487 1.69920 1.08873 1.42019 1.32357 0.87006 0.80804 0.80101 0.82340 1.20068 1.21597 1.18987 1.64060 1.55574 1.01112 1.04065 1.22863 0.98568 0.96051 0.90641 1.22632 1.00610 0.95066 0.97185 1.22946 1.01490 0.94029 0.96007 0.89591 1.21072 0.82147 0.93452 0.93776 1.21713 0.98375 1.01935 0.97157 1.22492 1.02913 0.98630 0.99522 1.86450 1.15803 1.95659 1.39025 1.22497 0.95597 0.91134 0.97626 0.94141 0.94868 0.92207 0.92872 0.93154 0.92653 0.92593 0.91911 0.92440 0.90981 0.91394 0.92607 0.91951 0.92166 0.92513 0.91567 0.77687 0.93570 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.80 37.15 0.36 -2.17 16 2 C -0.10 -2.15 5.31 -26.74 -0.14 -2.29 16 3 C 0.16 3.72 1.59 -68.87 -0.11 3.61 16 4 H 0.04 1.03 4.72 -51.93 -0.24 0.79 16 5 C -0.54 -14.05 7.14 -34.44 -0.25 -14.30 16 6 H 0.08 2.19 6.59 -52.49 -0.35 1.84 16 7 C 0.08 2.15 5.12 -17.82 -0.09 2.06 16 8 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 9 Si 0.87 20.93 25.93 -169.99 -4.41 16.52 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.26 -6.23 6.73 56.52 0.38 -5.85 16 13 N -0.52 -10.68 4.63 -224.68 -1.04 -11.72 16 14 C 0.05 0.90 5.19 -2.29 -0.01 0.89 16 15 C -0.12 -1.99 5.62 -24.59 -0.14 -2.13 16 16 C -0.13 -2.21 2.35 -88.79 -0.21 -2.42 16 17 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 18 C 0.14 2.05 0.83 -90.62 -0.08 1.98 16 19 C -0.13 -1.83 8.69 37.16 0.32 -1.51 16 20 C -0.18 -2.55 8.58 37.16 0.32 -2.23 16 21 O -0.56 -8.47 11.89 -35.23 -0.42 -8.89 16 22 C 0.06 1.17 4.90 -2.83 -0.01 1.15 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 1.04 7.75 -51.93 -0.40 0.64 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 1.02 7.10 -51.93 -0.37 0.65 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 30 H 0.06 1.38 5.65 -51.93 -0.29 1.08 16 31 H 0.06 0.93 8.12 -51.93 -0.42 0.50 16 32 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.85 7.48 -51.93 -0.39 0.46 16 36 H 0.06 0.88 7.05 -51.93 -0.37 0.51 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.37 5.01 7.13 45.56 0.32 5.33 16 40 H 0.05 0.80 5.75 -51.93 -0.30 0.50 16 41 H 0.06 1.38 5.62 -51.93 -0.29 1.09 16 LS Contribution 304.14 15.07 4.58 4.58 Total: -1.00 -27.98 304.14 -6.97 -34.95 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.43 Total: 7.25 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -0.03 Total: -17.38 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.27 Total: -37.04 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.42 Total: -8.89 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.41 Total: 16.52 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.98 -6.97 -34.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721851054.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.649 kcal (2) G-P(sol) polarization free energy of solvation -27.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds