Wall clock time and date at job start Mon Mar 30 2020 04:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47256 * 2 1 4 4 H 1.08994 * 109.47234 * 305.04310 * 3 2 1 5 5 C 1.50699 * 109.47446 * 185.03858 * 3 2 1 6 6 H 1.08001 * 120.00206 * 302.93497 * 5 3 2 7 7 C 1.37878 * 119.99865 * 122.93431 * 5 3 2 8 8 N 1.31520 * 120.00132 * 172.91100 * 7 5 3 9 9 Si 1.86798 * 120.00143 * 352.90528 * 7 5 3 10 10 H 1.48499 * 109.47109 * 84.72424 * 9 7 5 11 11 H 1.48500 * 109.47549 * 204.72616 * 9 7 5 12 12 H 1.48508 * 109.47243 * 324.72649 * 9 7 5 13 13 N 1.46901 * 109.47126 * 65.04007 * 3 2 1 14 14 C 1.47852 * 110.99621 * 63.25178 * 13 3 2 15 15 C 1.54908 * 104.79468 * 146.36713 * 14 13 3 16 16 C 1.55141 * 101.65286 * 322.92860 * 15 14 13 17 17 H 1.08998 * 110.70696 * 277.27390 * 16 15 14 18 18 C 1.53005 * 110.70721 * 154.03557 * 16 15 14 19 19 C 1.53001 * 109.46558 * 66.40171 * 18 16 15 20 20 C 1.52998 * 109.47128 * 186.39842 * 18 16 15 21 21 O 1.42894 * 109.46950 * 306.40316 * 18 16 15 22 22 C 1.47442 * 111.00265 * 184.09454 * 13 3 2 23 23 H 1.09000 * 109.47192 * 59.99903 * 1 2 3 24 24 H 1.08998 * 109.47231 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47283 * 299.99964 * 1 2 3 26 26 H 1.09001 * 109.47283 * 240.00036 * 2 1 3 27 27 H 1.09000 * 109.47192 * 120.00097 * 2 1 3 28 28 H 0.96994 * 119.99751 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.37572 * 265.19292 * 14 13 3 30 30 H 1.08995 * 110.37609 * 27.42635 * 14 13 3 31 31 H 1.08999 * 110.99106 * 204.83826 * 15 14 13 32 32 H 1.08997 * 110.99337 * 81.01887 * 15 14 13 33 33 H 1.08994 * 109.47555 * 60.00298 * 19 18 16 34 34 H 1.09006 * 109.46799 * 180.02562 * 19 18 16 35 35 H 1.08994 * 109.47290 * 299.99457 * 19 18 16 36 36 H 1.09005 * 109.46613 * 60.00185 * 20 18 16 37 37 H 1.08995 * 109.47240 * 179.97438 * 20 18 16 38 38 H 1.09000 * 109.47534 * 300.00665 * 20 18 16 39 39 H 0.96699 * 114.00204 * 299.99535 * 21 18 16 40 40 H 1.09004 * 109.88697 * 117.33982 * 22 13 3 41 41 H 1.08994 * 110.02073 * 356.22272 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6048 1.9817 -0.8413 5 6 3.5418 1.4443 -0.1248 6 1 4.1443 0.9137 0.5976 7 6 4.1465 2.1235 -1.1612 8 7 5.4559 2.2433 -1.1935 9 14 3.1063 2.8732 -2.5195 10 1 2.6332 4.2159 -2.0968 11 1 3.9217 3.0018 -3.7539 12 1 1.9368 1.9981 -2.7877 13 7 1.6522 2.0989 1.2556 14 6 2.2883 1.4401 2.4164 15 6 2.5502 2.5849 3.4266 16 6 2.9427 3.7519 2.4828 17 1 3.9955 3.6879 2.2079 18 6 2.6331 5.1016 3.1336 19 6 3.5400 5.3014 4.3495 20 6 2.8801 6.2236 2.1232 21 8 1.2662 5.1274 3.5495 22 6 2.0422 3.5208 1.2509 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8813 2.7207 -1.9228 29 1 1.6152 0.6995 2.8483 30 1 3.2266 0.9716 2.1196 31 1 3.3709 2.3329 4.0981 32 1 1.6473 2.8240 3.9884 33 1 4.5826 5.2817 4.0322 34 1 3.3192 6.2627 4.8134 35 1 3.3641 4.5021 5.0693 36 1 2.2339 6.0812 1.2570 37 1 2.6590 7.1851 2.5867 38 1 3.9227 6.2039 1.8059 39 1 0.6333 5.0065 2.8285 40 1 1.1541 4.1492 1.3178 41 1 2.5934 3.7536 0.3399 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721851054.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:21 Heat of formation + Delta-G solvation = -82.309119 kcal Electronic energy + Delta-G solvation = -19233.002235 eV Core-core repulsion = 16532.326218 eV Total energy + Delta-G solvation = -2700.676017 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84196 -38.45214 -35.32687 -34.14179 -33.13723 -31.00183 -29.53262 -28.42932 -27.91643 -24.72290 -22.83954 -22.74085 -20.71944 -20.37702 -19.05253 -17.74285 -17.04702 -16.55724 -16.13363 -15.60019 -15.08117 -14.87827 -14.41300 -14.33660 -14.06525 -13.68732 -13.56030 -13.36972 -13.09407 -13.07250 -12.86703 -12.82485 -12.54801 -12.42459 -12.14424 -11.95441 -11.79319 -11.69456 -11.45461 -11.35879 -11.18435 -11.04773 -10.73890 -10.63057 -8.84749 -8.31873 -6.35416 1.26208 1.30692 1.39055 2.28153 3.00987 3.36097 3.52829 3.71053 3.82229 4.03164 4.20625 4.25958 4.41005 4.53022 4.55606 4.60772 4.71444 4.75207 4.80936 4.88198 4.91001 4.95711 4.99443 5.09788 5.15627 5.17764 5.18538 5.24015 5.29831 5.36090 5.38492 5.49600 5.58564 5.63917 5.67303 6.18488 6.45864 6.53501 6.74264 6.86864 7.32961 8.83999 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020446 B = 0.010179 C = 0.008268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.144924 B = 2750.195259 C = 3385.686176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 C 0.166 3.834 4 H 0.037 0.963 5 C -0.525 4.525 6 H 0.035 0.965 7 C 0.027 3.973 8 N -0.942 5.942 9 Si 0.924 3.076 10 H -0.263 1.263 11 H -0.291 1.291 12 H -0.252 1.252 13 N -0.516 5.516 14 C 0.047 3.953 15 C -0.106 4.106 16 C -0.120 4.120 17 H 0.050 0.950 18 C 0.143 3.857 19 C -0.135 4.135 20 C -0.176 4.176 21 O -0.562 6.562 22 C 0.056 3.944 23 H 0.042 0.958 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.263 0.737 29 H 0.073 0.927 30 H 0.028 0.972 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.382 0.618 40 H 0.075 0.925 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.568 4.950 7.142 12.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.143 4.143 3 C 0.059 3.941 4 H 0.055 0.945 5 C -0.564 4.564 6 H 0.053 0.947 7 C -0.171 4.171 8 N -0.582 5.582 9 Si 0.750 3.250 10 H -0.188 1.188 11 H -0.218 1.218 12 H -0.176 1.176 13 N -0.239 5.239 14 C -0.081 4.081 15 C -0.143 4.143 16 C -0.139 4.139 17 H 0.069 0.931 18 C 0.102 3.898 19 C -0.192 4.192 20 C -0.234 4.234 21 O -0.371 6.371 22 C -0.072 4.072 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.232 0.768 40 H 0.093 0.907 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.711 5.053 7.643 12.643 hybrid contribution 1.184 0.089 -1.794 2.151 sum -7.528 5.142 5.849 10.832 Atomic orbital electron populations 1.21641 0.94754 1.00948 1.01708 1.21507 0.96141 0.96623 1.00071 1.19872 0.91661 0.92975 0.89599 0.94462 1.21659 0.92589 1.31199 1.10968 0.94702 1.25802 0.95517 0.96001 0.99823 1.70061 1.10763 1.43933 1.33427 0.86107 0.79570 0.80012 0.79346 1.18822 1.21773 1.17606 1.64098 1.54984 1.01529 1.03276 1.22870 0.97215 0.97084 0.90957 1.22574 1.01543 0.93612 0.96609 1.22843 0.99028 0.96336 0.95725 0.93106 1.20989 0.82674 0.91779 0.94338 1.21725 0.98097 1.02850 0.96517 1.22474 1.02259 0.99350 0.99312 1.86452 1.15606 1.95526 1.39487 1.22587 0.96715 0.90984 0.96907 0.93925 0.92446 0.91830 0.93988 0.93390 0.92768 0.90832 0.95406 0.91621 0.89416 0.91346 0.91044 0.91858 0.92586 0.90530 0.92518 0.76775 0.90701 0.95366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 9.80 71.98 0.71 -3.61 16 2 C -0.10 -4.21 5.31 30.59 0.16 -4.05 16 3 C 0.17 7.50 1.59 44.17 0.07 7.57 16 4 H 0.04 1.74 4.72 -2.39 -0.01 1.73 16 5 C -0.52 -28.47 7.14 25.60 0.18 -28.29 16 6 H 0.03 2.14 6.59 -2.91 -0.02 2.12 16 7 C 0.03 1.53 5.12 84.65 0.43 1.97 16 8 N -0.94 -57.15 13.96 21.45 0.30 -56.85 16 9 Si 0.92 43.38 25.93 68.60 1.78 45.16 16 10 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.25 -11.20 6.73 99.48 0.67 -10.53 16 13 N -0.52 -20.48 4.63 -864.74 -4.00 -24.48 16 14 C 0.05 1.77 5.19 86.77 0.45 2.22 16 15 C -0.11 -3.45 5.62 31.98 0.18 -3.27 16 16 C -0.12 -4.16 2.35 -9.61 -0.02 -4.18 16 17 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 18 C 0.14 4.03 0.83 -10.79 -0.01 4.03 16 19 C -0.13 -3.39 8.69 71.98 0.63 -2.76 16 20 C -0.18 -4.75 8.58 71.98 0.62 -4.13 16 21 O -0.56 -15.12 11.89 -148.98 -1.77 -16.89 16 22 C 0.06 2.14 4.90 86.65 0.42 2.57 16 23 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 2.01 7.75 -2.39 -0.02 1.99 16 26 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.92 7.10 -2.39 -0.02 1.90 16 28 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.07 2.53 8.10 -2.39 -0.02 2.51 16 30 H 0.03 1.26 5.65 -2.39 -0.01 1.24 16 31 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 32 H 0.09 2.65 7.18 -2.39 -0.02 2.63 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.06 1.57 7.48 -2.39 -0.02 1.55 16 36 H 0.06 1.54 7.05 -2.38 -0.02 1.52 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.38 8.87 7.13 -74.06 -0.53 8.34 16 40 H 0.08 2.42 5.75 -2.38 -0.01 2.40 16 41 H 0.03 1.26 5.62 -2.39 -0.01 1.25 16 Total: -1.00 -61.23 304.14 0.55 -60.67 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.43 Total: 24.34 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 3.82 Total: -31.95 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -3.71 Total: -81.33 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -1.77 Total: -16.89 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.78 Total: 45.16 kcal Total: -61.23 0.55 -60.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721851054.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.637 kcal (2) G-P(sol) polarization free energy of solvation -61.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds