Wall clock time and date at job start Mon Mar 30 2020 04:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46955 * 2 1 4 4 H 1.08998 * 109.47121 * 54.39227 * 3 2 1 5 5 C 1.50702 * 109.46981 * 174.38841 * 3 2 1 6 6 H 1.07996 * 119.99935 * 114.45552 * 5 3 2 7 7 C 1.37875 * 119.99799 * 294.45620 * 5 3 2 8 8 N 1.31512 * 120.00362 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99904 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47141 * 89.99725 * 9 7 5 11 11 H 1.48503 * 109.47395 * 209.99973 * 9 7 5 12 12 H 1.48500 * 109.47030 * 330.00193 * 9 7 5 13 13 N 1.46901 * 109.46949 * 294.38742 * 3 2 1 14 14 C 1.46844 * 110.99925 * 289.41435 * 13 3 2 15 15 C 1.53033 * 109.52513 * 174.16428 * 14 13 3 16 16 C 1.53121 * 109.27899 * 59.17333 * 15 14 13 17 17 C 1.53117 * 109.16289 * 302.35282 * 16 15 14 18 18 C 1.46844 * 110.99528 * 165.20348 * 13 3 2 19 19 C 1.53001 * 109.46386 * 65.82633 * 18 13 3 20 20 C 1.52994 * 109.46794 * 305.85454 * 18 13 3 21 21 O 1.42894 * 109.47603 * 185.52331 * 20 18 13 22 22 H 1.09005 * 109.47104 * 300.00209 * 1 2 3 23 23 H 1.09005 * 109.46778 * 60.00373 * 1 2 3 24 24 H 1.09003 * 109.47217 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47249 * 239.99611 * 2 1 3 26 26 H 1.09005 * 109.46778 * 119.99627 * 2 1 3 27 27 H 0.97001 * 120.00350 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.46543 * 54.14110 * 14 13 3 29 29 H 1.09005 * 109.46136 * 294.17762 * 14 13 3 30 30 H 1.09007 * 109.49950 * 299.23987 * 15 14 13 31 31 H 1.08997 * 109.50801 * 179.12083 * 15 14 13 32 32 H 1.09005 * 109.51813 * 62.25717 * 16 15 14 33 33 H 1.08997 * 109.52411 * 182.43968 * 16 15 14 34 34 H 1.09001 * 109.50305 * 177.59793 * 17 16 15 35 35 H 1.09003 * 109.49735 * 297.71089 * 17 16 15 36 36 H 1.08998 * 109.47300 * 171.84048 * 19 18 13 37 37 H 1.09003 * 109.46987 * 291.83161 * 19 18 13 38 38 H 1.08999 * 109.47429 * 51.83563 * 19 18 13 39 39 H 1.09006 * 109.46999 * 305.52211 * 20 18 13 40 40 H 1.09002 * 109.47342 * 65.52076 * 20 18 13 41 41 H 0.96700 * 114.00464 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5970 1.9845 0.8355 5 6 3.5406 1.4448 0.1389 6 1 4.1573 1.8048 -0.6712 7 6 4.1260 0.9872 1.3003 8 7 3.3750 0.5492 2.2871 9 14 5.9861 0.9893 1.4723 10 1 6.4281 2.2827 2.0529 11 1 6.4020 -0.1220 2.3652 12 1 6.6070 0.8090 0.1354 13 7 1.6640 2.0948 -1.2614 14 6 2.4373 1.5517 -2.3855 15 6 1.9199 2.1469 -3.6970 16 6 2.0558 3.6713 -3.6488 17 6 1.2813 4.2069 -2.4414 18 6 1.8172 3.5521 -1.1663 19 6 3.2979 3.8992 -0.9986 20 6 1.0327 4.0695 0.0410 21 8 1.0751 5.4977 0.0602 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.7869 0.2269 3.1040 28 1 2.3287 0.4674 -2.4109 29 1 3.4892 1.8084 -2.2603 30 1 0.8717 1.8790 -3.8296 31 1 2.5043 1.7556 -4.5298 32 1 3.1080 3.9404 -3.5553 33 1 1.6486 4.1024 -4.5633 34 1 1.4094 5.2875 -2.3772 35 1 0.2231 3.9714 -2.5544 36 1 3.4287 4.9787 -1.0731 37 1 3.6427 3.5581 -0.0224 38 1 3.8771 3.4081 -1.7805 39 1 -0.0033 3.7378 -0.0296 40 1 1.4771 3.6805 0.9571 41 1 0.5967 5.8956 0.8004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723025778.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:08 Heat of formation + Delta-G solvation = -50.299520 kcal Electronic energy + Delta-G solvation = -19708.214486 eV Core-core repulsion = 17008.926509 eV Total energy + Delta-G solvation = -2699.287977 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.53566 -35.99287 -34.65529 -31.91334 -31.71086 -30.32849 -26.76645 -26.58207 -25.35868 -23.37032 -22.42128 -20.61168 -19.33645 -17.50607 -16.92038 -16.29308 -15.32080 -14.62878 -14.34061 -14.09962 -13.71600 -13.23380 -13.05398 -12.62619 -12.52834 -12.16375 -11.90446 -11.69891 -11.40487 -11.19684 -11.11988 -10.88395 -10.71620 -10.60379 -10.27616 -10.14186 -10.03723 -9.89181 -9.53584 -9.41523 -9.29919 -9.20871 -8.70508 -8.32028 -7.05923 -5.99579 -4.06568 3.26427 3.34255 3.37123 4.40243 4.59866 5.24017 5.27438 5.41696 5.45097 5.58688 5.75205 5.95337 6.04701 6.16361 6.24574 6.29417 6.34153 6.39199 6.45870 6.46740 6.56624 6.62342 6.66001 6.70617 6.74448 6.80822 6.91855 7.06098 7.12496 7.18411 7.38508 7.45516 7.62313 7.77348 7.95590 8.11859 8.18677 8.35895 8.50992 9.00297 9.56555 11.01703 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.010285 C = 0.009743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.349631 B = 2721.719065 C = 2873.145239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.205 3.795 4 H 0.047 0.953 5 C -0.538 4.538 6 H 0.067 0.933 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.881 3.119 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.523 5.523 14 C 0.061 3.939 15 C -0.118 4.118 16 C -0.119 4.119 17 C -0.098 4.098 18 C 0.127 3.873 19 C -0.173 4.173 20 C 0.087 3.913 21 O -0.576 6.576 22 H 0.037 0.963 23 H 0.049 0.951 24 H 0.024 0.976 25 H 0.033 0.967 26 H 0.081 0.919 27 H 0.260 0.740 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.034 0.966 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.041 0.959 40 H 0.059 0.941 41 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.203 4.536 -6.123 8.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C 0.099 3.901 4 H 0.064 0.936 5 C -0.577 4.577 6 H 0.085 0.915 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.709 3.291 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.249 5.249 14 C -0.067 4.067 15 C -0.156 4.156 16 C -0.156 4.156 17 C -0.136 4.136 18 C 0.037 3.963 19 C -0.231 4.231 20 C 0.009 3.991 21 O -0.380 6.380 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.339 4.250 -6.562 8.941 hybrid contribution 1.625 0.100 0.910 1.865 sum -2.714 4.350 -5.651 7.630 Atomic orbital electron populations 1.21715 0.98870 0.98455 1.00548 1.21520 0.92285 0.99349 1.01166 1.19424 0.93470 0.91120 0.86086 0.93552 1.21967 0.92931 1.41802 1.01028 0.91470 1.24901 0.97404 0.95218 0.96043 1.69909 1.34641 1.42554 1.05445 0.86771 0.86688 0.77624 0.78017 1.20783 1.21313 1.20021 1.62460 1.55035 1.01432 1.05927 1.21939 0.96592 0.98830 0.89380 1.21647 1.01097 0.95229 0.97608 1.21579 1.00326 0.96148 0.97564 1.21510 0.99128 0.99116 0.93803 1.20566 0.93912 0.89187 0.92635 1.22734 0.96855 0.99005 1.04516 1.22326 0.98652 0.79248 0.98839 1.86400 1.78197 1.20850 1.52515 0.94361 0.93210 0.95640 0.94847 0.90107 0.93014 0.91393 0.93633 0.92135 0.92960 0.92411 0.93219 0.91972 0.92492 0.94743 0.89058 0.93182 0.94035 0.92241 0.78475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.81 37.16 0.36 -2.38 16 2 C -0.10 -2.39 5.29 -26.73 -0.14 -2.53 16 3 C 0.21 4.76 1.32 -68.86 -0.09 4.67 16 4 H 0.05 1.19 5.56 -51.93 -0.29 0.90 16 5 C -0.54 -13.56 5.15 -34.44 -0.18 -13.74 16 6 H 0.07 1.70 4.28 -52.49 -0.22 1.48 16 7 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -24.24 11.73 55.43 0.65 -23.59 16 9 Si 0.88 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.52 -10.61 3.88 -212.51 -0.83 -11.43 16 14 C 0.06 1.17 4.50 -3.84 -0.02 1.15 16 15 C -0.12 -1.90 6.09 -26.65 -0.16 -2.06 16 16 C -0.12 -1.86 5.70 -26.61 -0.15 -2.01 16 17 C -0.10 -1.66 4.66 -26.65 -0.12 -1.79 16 18 C 0.13 2.44 0.52 -131.62 -0.07 2.37 16 19 C -0.17 -3.53 6.10 37.16 0.23 -3.30 16 20 C 0.09 1.62 5.35 37.15 0.20 1.81 16 21 O -0.58 -9.51 12.48 -35.23 -0.44 -9.95 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.95 7.77 -51.93 -0.40 0.55 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.03 0.75 6.41 -51.93 -0.33 0.42 16 26 H 0.08 2.07 6.42 -51.93 -0.33 1.74 16 27 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.07 1.35 6.34 -51.93 -0.33 1.02 16 29 H 0.05 0.96 4.39 -51.93 -0.23 0.73 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.93 6.75 -51.93 -0.35 0.58 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 1.06 7.58 -51.93 -0.39 0.66 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.03 0.67 8.04 -51.93 -0.42 0.25 16 37 H 0.09 2.12 5.66 -51.93 -0.29 1.83 16 38 H 0.05 1.02 4.44 -51.93 -0.23 0.79 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.24 6.33 -51.93 -0.33 0.91 16 41 H 0.37 4.35 9.12 45.56 0.42 4.77 16 LS Contribution 293.11 15.07 4.42 4.42 Total: -1.00 -26.88 293.11 -7.29 -34.17 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.83 Total: 6.77 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -0.24 Total: -16.14 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: -0.18 Total: -35.02 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.44 Total: -9.95 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.88 -7.29 -34.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723025778.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.127 kcal (2) G-P(sol) polarization free energy of solvation -26.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds