Wall clock time and date at job start Mon Mar 30 2020 04:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46955 * 2 1 4 4 H 1.08998 * 109.47121 * 54.39227 * 3 2 1 5 5 C 1.50702 * 109.46981 * 174.38841 * 3 2 1 6 6 H 1.07996 * 119.99935 * 114.45552 * 5 3 2 7 7 C 1.37875 * 119.99799 * 294.45620 * 5 3 2 8 8 N 1.31512 * 120.00362 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99904 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47141 * 89.99725 * 9 7 5 11 11 H 1.48503 * 109.47395 * 209.99973 * 9 7 5 12 12 H 1.48500 * 109.47030 * 330.00193 * 9 7 5 13 13 N 1.46901 * 109.46949 * 294.38742 * 3 2 1 14 14 C 1.46844 * 110.99925 * 289.41435 * 13 3 2 15 15 C 1.53033 * 109.52513 * 174.16428 * 14 13 3 16 16 C 1.53121 * 109.27899 * 59.17333 * 15 14 13 17 17 C 1.53117 * 109.16289 * 302.35282 * 16 15 14 18 18 C 1.46844 * 110.99528 * 165.20348 * 13 3 2 19 19 C 1.53001 * 109.46386 * 65.82633 * 18 13 3 20 20 C 1.52994 * 109.46794 * 305.85454 * 18 13 3 21 21 O 1.42894 * 109.47603 * 185.52331 * 20 18 13 22 22 H 1.09005 * 109.47104 * 300.00209 * 1 2 3 23 23 H 1.09005 * 109.46778 * 60.00373 * 1 2 3 24 24 H 1.09003 * 109.47217 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47249 * 239.99611 * 2 1 3 26 26 H 1.09005 * 109.46778 * 119.99627 * 2 1 3 27 27 H 0.97001 * 120.00350 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.46543 * 54.14110 * 14 13 3 29 29 H 1.09005 * 109.46136 * 294.17762 * 14 13 3 30 30 H 1.09007 * 109.49950 * 299.23987 * 15 14 13 31 31 H 1.08997 * 109.50801 * 179.12083 * 15 14 13 32 32 H 1.09005 * 109.51813 * 62.25717 * 16 15 14 33 33 H 1.08997 * 109.52411 * 182.43968 * 16 15 14 34 34 H 1.09001 * 109.50305 * 177.59793 * 17 16 15 35 35 H 1.09003 * 109.49735 * 297.71089 * 17 16 15 36 36 H 1.08998 * 109.47300 * 171.84048 * 19 18 13 37 37 H 1.09003 * 109.46987 * 291.83161 * 19 18 13 38 38 H 1.08999 * 109.47429 * 51.83563 * 19 18 13 39 39 H 1.09006 * 109.46999 * 305.52211 * 20 18 13 40 40 H 1.09002 * 109.47342 * 65.52076 * 20 18 13 41 41 H 0.96700 * 114.00464 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5970 1.9845 0.8355 5 6 3.5406 1.4448 0.1389 6 1 4.1573 1.8048 -0.6712 7 6 4.1260 0.9872 1.3003 8 7 3.3750 0.5492 2.2871 9 14 5.9861 0.9893 1.4723 10 1 6.4281 2.2827 2.0529 11 1 6.4020 -0.1220 2.3652 12 1 6.6070 0.8090 0.1354 13 7 1.6640 2.0948 -1.2614 14 6 2.4373 1.5517 -2.3855 15 6 1.9199 2.1469 -3.6970 16 6 2.0558 3.6713 -3.6488 17 6 1.2813 4.2069 -2.4414 18 6 1.8172 3.5521 -1.1663 19 6 3.2979 3.8992 -0.9986 20 6 1.0327 4.0695 0.0410 21 8 1.0751 5.4977 0.0602 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.7869 0.2269 3.1040 28 1 2.3287 0.4674 -2.4109 29 1 3.4892 1.8084 -2.2603 30 1 0.8717 1.8790 -3.8296 31 1 2.5043 1.7556 -4.5298 32 1 3.1080 3.9404 -3.5553 33 1 1.6486 4.1024 -4.5633 34 1 1.4094 5.2875 -2.3772 35 1 0.2231 3.9714 -2.5544 36 1 3.4287 4.9787 -1.0731 37 1 3.6427 3.5581 -0.0224 38 1 3.8771 3.4081 -1.7805 39 1 -0.0033 3.7378 -0.0296 40 1 1.4771 3.6805 0.9571 41 1 0.5967 5.8956 0.8004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723025778.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:08 Heat of formation + Delta-G solvation = -68.192993 kcal Electronic energy + Delta-G solvation = -19708.990405 eV Core-core repulsion = 17008.926509 eV Total energy + Delta-G solvation = -2700.063896 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.09992 -37.41912 -36.30954 -33.79222 -33.22615 -31.90773 -28.55848 -28.24521 -26.84386 -25.04525 -24.09274 -22.05175 -21.05468 -19.13125 -18.33266 -18.15539 -17.00874 -16.29773 -15.91395 -15.69349 -15.20023 -14.94304 -14.67513 -14.23708 -13.97105 -13.68681 -13.45698 -13.29877 -13.08078 -12.99024 -12.87955 -12.56932 -12.42884 -12.17075 -12.00377 -11.70134 -11.66021 -11.40068 -11.29959 -10.96460 -10.91185 -10.81335 -10.42412 -10.27113 -8.80165 -7.98489 -6.11512 1.35413 1.39385 1.45664 2.42938 3.14946 3.23310 3.78119 4.03776 4.07885 4.22686 4.28580 4.50763 4.56934 4.65222 4.74496 4.76304 4.82698 4.87746 4.90425 4.94977 5.05457 5.16412 5.20076 5.21953 5.29807 5.32137 5.38005 5.44120 5.47853 5.58357 5.62094 5.69014 5.80205 5.87239 6.09059 6.31315 6.49007 6.79805 6.95866 7.05892 7.53530 8.98737 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.010285 C = 0.009743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.349631 B = 2721.719065 C = 2873.145239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 C 0.212 3.788 4 H 0.022 0.978 5 C -0.532 4.532 6 H 0.063 0.937 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.930 3.070 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.517 5.517 14 C 0.060 3.940 15 C -0.110 4.110 16 C -0.116 4.116 17 C -0.090 4.090 18 C 0.120 3.880 19 C -0.161 4.161 20 C 0.098 3.902 21 O -0.579 6.579 22 H 0.031 0.969 23 H 0.059 0.941 24 H 0.043 0.957 25 H 0.032 0.968 26 H 0.049 0.951 27 H 0.257 0.743 28 H 0.058 0.942 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.027 0.973 41 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 5.305 -8.021 10.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.140 4.140 3 C 0.105 3.895 4 H 0.039 0.961 5 C -0.572 4.572 6 H 0.081 0.919 7 C -0.178 4.178 8 N -0.554 5.554 9 Si 0.758 3.242 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.242 5.242 14 C -0.068 4.068 15 C -0.147 4.147 16 C -0.153 4.153 17 C -0.128 4.128 18 C 0.030 3.970 19 C -0.219 4.219 20 C 0.020 3.980 21 O -0.385 6.385 22 H 0.051 0.949 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -5.018 5.037 -8.464 11.054 hybrid contribution 1.829 -0.080 1.501 2.367 sum -3.189 4.957 -6.964 9.124 Atomic orbital electron populations 1.21570 0.96339 0.99739 1.00667 1.21381 0.94516 0.98586 0.99470 1.19199 0.92096 0.91331 0.86889 0.96057 1.22208 0.94222 1.40237 1.00488 0.91877 1.25481 1.00473 0.95654 0.96196 1.70020 1.35715 1.43936 1.05770 0.85986 0.83129 0.77275 0.77829 1.20899 1.21367 1.19711 1.62447 1.54786 1.02113 1.04844 1.21975 0.95527 0.98553 0.90782 1.21592 1.01693 0.95465 0.95980 1.21577 0.99918 0.95725 0.98112 1.21443 0.99497 0.99018 0.92854 1.20723 0.93247 0.88600 0.94449 1.22556 0.97845 0.99222 1.02279 1.22054 0.98524 0.80326 0.97141 1.86346 1.78839 1.19464 1.53878 0.94937 0.92240 0.93792 0.94953 0.93278 0.93354 0.92365 0.95649 0.91358 0.90858 0.93043 0.90321 0.91632 0.91872 0.94004 0.92529 0.93357 0.93294 0.95481 0.75976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 9.81 71.98 0.71 -4.16 16 2 C -0.10 -4.65 5.29 30.60 0.16 -4.48 16 3 C 0.21 9.98 1.32 44.17 0.06 10.04 16 4 H 0.02 1.13 5.56 -2.39 -0.01 1.12 16 5 C -0.53 -27.38 5.15 25.60 0.13 -27.24 16 6 H 0.06 3.25 4.28 -2.91 -0.01 3.24 16 7 C 0.02 1.13 5.30 84.65 0.45 1.58 16 8 N -0.91 -51.45 11.73 21.45 0.25 -51.20 16 9 Si 0.93 43.43 29.54 68.60 2.03 45.45 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 N -0.52 -20.59 3.88 -826.26 -3.21 -23.80 16 14 C 0.06 2.23 4.50 86.32 0.39 2.62 16 15 C -0.11 -3.18 6.09 30.65 0.19 -2.99 16 16 C -0.12 -3.22 5.70 30.67 0.17 -3.05 16 17 C -0.09 -2.82 4.66 30.65 0.14 -2.67 16 18 C 0.12 4.47 0.52 3.55 0.00 4.47 16 19 C -0.16 -6.51 6.10 71.98 0.44 -6.07 16 20 C 0.10 3.57 5.35 71.98 0.38 3.96 16 21 O -0.58 -18.18 12.48 -148.98 -1.86 -20.04 16 22 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 23 H 0.06 2.17 7.77 -2.38 -0.02 2.15 16 24 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.03 1.45 6.41 -2.39 -0.02 1.44 16 26 H 0.05 2.57 6.42 -2.38 -0.02 2.56 16 27 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 28 H 0.06 2.27 6.34 -2.39 -0.02 2.25 16 29 H 0.03 1.05 4.39 -2.38 -0.01 1.04 16 30 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 1.51 6.75 -2.38 -0.02 1.49 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 2.02 7.58 -2.39 -0.02 2.00 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.59 8.04 -2.39 -0.02 1.57 16 37 H 0.06 2.68 5.66 -2.39 -0.01 2.66 16 38 H 0.05 1.94 4.44 -2.39 -0.01 1.93 16 39 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.03 1.16 6.33 -2.39 -0.02 1.15 16 41 H 0.39 8.51 9.12 -74.06 -0.68 7.84 16 Total: -1.00 -57.71 293.11 0.78 -56.93 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.35 Total: 20.65 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 3.23 Total: -27.99 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -2.96 Total: -75.00 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.86 Total: -20.04 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -57.71 0.78 -56.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723025778.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.264 kcal (2) G-P(sol) polarization free energy of solvation -57.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds