Wall clock time and date at job start Mon Mar 30 2020 03:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47133 * 2 1 4 4 H 1.09010 * 115.54647 * 330.66887 * 3 2 1 5 5 C 1.53067 * 117.51497 * 116.39100 * 3 2 1 6 6 C 1.52995 * 59.98619 * 107.47811 * 5 3 2 7 7 H 1.08995 * 117.49840 * 107.49794 * 6 5 3 8 8 C 1.52994 * 117.50101 * 252.50186 * 6 5 3 9 9 N 1.46901 * 109.47346 * 244.16743 * 8 6 5 10 10 C 1.46898 * 111.00456 * 196.18061 * 9 8 6 11 11 C 1.50706 * 109.46845 * 67.07441 * 10 9 8 12 12 H 1.07996 * 120.00141 * 5.17553 * 11 10 9 13 13 C 1.37875 * 119.99433 * 185.16750 * 11 10 9 14 14 N 1.31508 * 120.00627 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99431 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47161 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47148 * 120.00614 * 15 13 11 18 18 H 1.48501 * 109.47222 * 240.00071 * 15 13 11 19 19 C 1.46902 * 110.99738 * 72.22734 * 9 8 6 20 20 C 1.53001 * 109.46836 * 190.00484 * 19 9 8 21 21 O 1.42893 * 109.47420 * 64.99964 * 20 19 9 22 22 C 1.42902 * 114.00287 * 179.97438 * 21 20 19 23 23 H 1.08996 * 109.46860 * 60.00346 * 1 2 3 24 24 H 1.09001 * 109.46864 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47404 * 299.99909 * 1 2 3 26 26 H 1.09001 * 109.46986 * 239.99754 * 2 1 3 27 27 H 1.08999 * 109.47150 * 120.00090 * 2 1 3 28 28 H 1.09000 * 117.51159 * 359.97438 * 5 3 2 29 29 H 1.09004 * 117.49524 * 214.96955 * 5 3 2 30 30 H 1.09003 * 109.47849 * 124.16385 * 8 6 5 31 31 H 1.09001 * 109.47474 * 4.16611 * 8 6 5 32 32 H 1.08997 * 109.47218 * 187.07956 * 10 9 8 33 33 H 1.09006 * 109.47193 * 307.08002 * 10 9 8 34 34 H 0.96996 * 120.00181 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.46916 * 310.00067 * 19 9 8 36 36 H 1.08997 * 109.47291 * 70.00149 * 19 9 8 37 37 H 1.09000 * 109.46906 * 184.99971 * 20 19 9 38 38 H 1.09001 * 109.47272 * 304.99505 * 20 19 9 39 39 H 1.08999 * 109.47041 * 299.99925 * 22 21 20 40 40 H 1.09001 * 109.46808 * 59.99703 * 22 21 20 41 41 H 1.08993 * 109.47230 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1715 -0.4818 5 6 2.8447 1.9081 1.2161 6 6 3.5502 1.6579 -0.1183 7 1 3.8920 2.5286 -0.6778 8 6 4.4347 0.4144 -0.2275 9 7 5.8297 0.8228 -0.4395 10 6 6.6396 -0.3021 -0.9261 11 6 6.1866 -0.6849 -2.3116 12 1 5.4361 -0.0949 -2.8166 13 6 6.7304 -1.7882 -2.9343 14 7 7.6440 -2.5069 -2.3192 15 14 6.1694 -2.2623 -4.6519 16 1 5.1409 -1.2990 -5.1202 17 1 7.3306 -2.2347 -5.5772 18 1 5.5912 -3.6298 -4.6241 19 6 6.4035 1.3928 0.7868 20 6 7.7574 2.0301 0.4679 21 8 7.5662 3.1401 -0.4114 22 6 8.7755 3.8101 -0.7732 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.0103 1.1868 2.0163 29 1 2.7220 2.9434 1.5343 30 1 4.1028 -0.1950 -1.0681 31 1 4.3617 -0.1655 0.6926 32 1 7.6889 -0.0087 -0.9550 33 1 6.5186 -1.1535 -0.2562 34 1 8.0268 -3.2829 -2.7575 35 1 5.7295 2.1515 1.1846 36 1 6.5386 0.6032 1.5259 37 1 8.2235 2.3741 1.3913 38 1 8.4019 1.2934 -0.0117 39 1 9.2622 4.1912 0.1246 40 1 9.4413 3.1105 -1.2784 41 1 8.5453 4.6394 -1.4419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723125107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:10 Heat of formation + Delta-G solvation = -30.495366 kcal Electronic energy + Delta-G solvation = -18020.707173 eV Core-core repulsion = 15322.277969 eV Total energy + Delta-G solvation = -2698.429204 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.44263 -37.37015 -35.56371 -32.53111 -31.75110 -29.47553 -27.32684 -26.00472 -24.48430 -23.71524 -22.46256 -20.99278 -20.03511 -18.71750 -16.58286 -15.91589 -15.52185 -15.14024 -14.90601 -14.42804 -14.18591 -14.11041 -13.44397 -13.19037 -12.98291 -12.23116 -12.05295 -11.96425 -11.71731 -11.44859 -11.30401 -11.18441 -11.07988 -10.87729 -10.74678 -10.57708 -10.43449 -10.18371 -9.84632 -9.34889 -9.31749 -9.07165 -9.03695 -8.38091 -7.10689 -5.98958 -3.98848 3.33159 3.40715 3.46704 4.15500 4.32130 4.46903 4.86197 4.96060 5.23741 5.33831 5.36350 5.41993 5.52848 5.53692 5.68078 5.72837 5.81539 5.85727 5.90678 5.95694 5.97943 6.03646 6.10885 6.17083 6.21578 6.27161 6.35922 6.44397 6.48541 6.61558 6.64047 6.93503 7.33668 7.40423 7.70110 7.89602 8.17589 8.29725 8.63692 9.10671 9.65120 11.11931 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.009238 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.531575 B = 3030.392070 C = 4879.918981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.153 4.153 4 H 0.097 0.903 5 C -0.187 4.187 6 C -0.127 4.127 7 H 0.109 0.891 8 C 0.096 3.904 9 N -0.525 5.525 10 C 0.189 3.811 11 C -0.500 4.500 12 H 0.065 0.935 13 C 0.054 3.946 14 N -0.901 5.901 15 Si 0.894 3.106 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.286 1.286 19 C 0.058 3.942 20 C 0.066 3.934 21 O -0.371 6.371 22 C 0.033 3.967 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.017 0.983 32 H 0.030 0.970 33 H -0.008 1.008 34 H 0.259 0.741 35 H 0.070 0.930 36 H 0.033 0.967 37 H 0.037 0.963 38 H 0.057 0.943 39 H 0.030 0.970 40 H 0.039 0.961 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 8.123 6.714 12.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.171 4.171 4 H 0.116 0.884 5 C -0.224 4.224 6 C -0.146 4.146 7 H 0.127 0.873 8 C -0.032 4.032 9 N -0.250 5.250 10 C 0.064 3.936 11 C -0.539 4.539 12 H 0.083 0.917 13 C -0.147 4.147 14 N -0.541 5.541 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.071 4.071 20 C -0.011 4.011 21 O -0.289 6.289 22 C -0.065 4.065 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.009 0.991 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.198 8.376 6.260 12.156 hybrid contribution 0.201 -1.000 -0.162 1.032 sum -5.997 7.376 6.098 11.294 Atomic orbital electron populations 1.21739 0.96120 1.01150 1.01372 1.21091 0.95153 0.94652 1.02404 1.22396 0.94559 0.97623 1.02554 0.88437 1.23153 1.06115 1.01234 0.91949 1.22532 0.92119 1.01257 0.98661 0.87253 1.21499 0.88531 0.93270 0.99900 1.61994 1.01457 1.34783 1.26741 1.19794 0.93004 0.85675 0.95142 1.21220 1.22474 1.10062 1.00104 0.91705 1.24983 0.95295 0.96373 0.98050 1.69965 1.28323 1.18064 1.37781 0.86490 0.78604 0.78180 0.84478 1.19573 1.21108 1.21193 1.22019 0.94961 0.97575 0.92505 1.22632 0.98034 0.88554 0.91833 1.87986 1.29138 1.44887 1.66880 1.22650 0.88252 0.96860 0.98695 0.92919 0.93040 0.93092 0.91097 0.92095 0.89492 0.89681 0.89227 0.96446 0.95239 0.99063 0.93107 0.91124 0.94874 0.94505 0.92455 0.95190 0.94264 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.87 37.16 0.37 -1.29 16 2 C -0.10 -1.31 5.30 -26.73 -0.14 -1.45 16 3 C -0.15 -2.16 5.74 -90.59 -0.52 -2.68 16 4 H 0.10 1.29 8.08 -51.92 -0.42 0.87 16 5 C -0.19 -2.62 9.82 -26.70 -0.26 -2.88 16 6 C -0.13 -2.12 5.00 -90.63 -0.45 -2.58 16 7 H 0.11 1.97 8.14 -51.93 -0.42 1.54 16 8 C 0.10 1.91 4.18 -3.83 -0.02 1.89 16 9 N -0.53 -11.59 4.39 -236.07 -1.04 -12.63 16 10 C 0.19 4.94 4.59 -4.97 -0.02 4.92 16 11 C -0.50 -14.16 8.18 -34.44 -0.28 -14.44 16 12 H 0.06 1.85 7.53 -52.49 -0.40 1.45 16 13 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 14 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 15 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 C 0.06 1.09 5.19 -3.82 -0.02 1.07 16 20 C 0.07 1.19 6.01 37.16 0.22 1.42 16 21 O -0.37 -6.97 10.65 -35.23 -0.38 -7.35 16 22 C 0.03 0.47 11.01 101.05 1.11 1.59 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.07 7.62 -51.93 -0.40 0.67 16 27 H 0.06 0.84 7.88 -51.93 -0.41 0.43 16 28 H 0.09 1.20 7.93 -51.93 -0.41 0.79 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 1.98 6.25 -51.93 -0.32 1.65 16 31 H 0.02 0.34 7.78 -51.93 -0.40 -0.06 16 32 H 0.03 0.82 5.97 -51.93 -0.31 0.51 16 33 H -0.01 -0.24 8.11 -51.93 -0.42 -0.66 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.07 1.23 7.28 -51.93 -0.38 0.86 16 36 H 0.03 0.61 8.12 -51.93 -0.42 0.19 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 1.14 6.15 -51.93 -0.32 0.82 16 39 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -30.15 329.81 -8.39 -38.54 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -7.55 Total: -1.28 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -0.11 Total: -12.99 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: -0.30 Total: -38.75 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.38 Total: -7.35 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.15 -8.39 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723125107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.046 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds