Wall clock time and date at job start Mon Mar 30 2020 03:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47133 * 2 1 4 4 H 1.09010 * 115.54647 * 330.66887 * 3 2 1 5 5 C 1.53067 * 117.51497 * 116.39100 * 3 2 1 6 6 C 1.52995 * 59.98619 * 107.47811 * 5 3 2 7 7 H 1.08995 * 117.49840 * 107.49794 * 6 5 3 8 8 C 1.52994 * 117.50101 * 252.50186 * 6 5 3 9 9 N 1.46901 * 109.47346 * 244.16743 * 8 6 5 10 10 C 1.46898 * 111.00456 * 196.18061 * 9 8 6 11 11 C 1.50706 * 109.46845 * 67.07441 * 10 9 8 12 12 H 1.07996 * 120.00141 * 5.17553 * 11 10 9 13 13 C 1.37875 * 119.99433 * 185.16750 * 11 10 9 14 14 N 1.31508 * 120.00627 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99431 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47161 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47148 * 120.00614 * 15 13 11 18 18 H 1.48501 * 109.47222 * 240.00071 * 15 13 11 19 19 C 1.46902 * 110.99738 * 72.22734 * 9 8 6 20 20 C 1.53001 * 109.46836 * 190.00484 * 19 9 8 21 21 O 1.42893 * 109.47420 * 64.99964 * 20 19 9 22 22 C 1.42902 * 114.00287 * 179.97438 * 21 20 19 23 23 H 1.08996 * 109.46860 * 60.00346 * 1 2 3 24 24 H 1.09001 * 109.46864 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47404 * 299.99909 * 1 2 3 26 26 H 1.09001 * 109.46986 * 239.99754 * 2 1 3 27 27 H 1.08999 * 109.47150 * 120.00090 * 2 1 3 28 28 H 1.09000 * 117.51159 * 359.97438 * 5 3 2 29 29 H 1.09004 * 117.49524 * 214.96955 * 5 3 2 30 30 H 1.09003 * 109.47849 * 124.16385 * 8 6 5 31 31 H 1.09001 * 109.47474 * 4.16611 * 8 6 5 32 32 H 1.08997 * 109.47218 * 187.07956 * 10 9 8 33 33 H 1.09006 * 109.47193 * 307.08002 * 10 9 8 34 34 H 0.96996 * 120.00181 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.46916 * 310.00067 * 19 9 8 36 36 H 1.08997 * 109.47291 * 70.00149 * 19 9 8 37 37 H 1.09000 * 109.46906 * 184.99971 * 20 19 9 38 38 H 1.09001 * 109.47272 * 304.99505 * 20 19 9 39 39 H 1.08999 * 109.47041 * 299.99925 * 22 21 20 40 40 H 1.09001 * 109.46808 * 59.99703 * 22 21 20 41 41 H 1.08993 * 109.47230 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1715 -0.4818 5 6 2.8447 1.9081 1.2161 6 6 3.5502 1.6579 -0.1183 7 1 3.8920 2.5286 -0.6778 8 6 4.4347 0.4144 -0.2275 9 7 5.8297 0.8228 -0.4395 10 6 6.6396 -0.3021 -0.9261 11 6 6.1866 -0.6849 -2.3116 12 1 5.4361 -0.0949 -2.8166 13 6 6.7304 -1.7882 -2.9343 14 7 7.6440 -2.5069 -2.3192 15 14 6.1694 -2.2623 -4.6519 16 1 5.1409 -1.2990 -5.1202 17 1 7.3306 -2.2347 -5.5772 18 1 5.5912 -3.6298 -4.6241 19 6 6.4035 1.3928 0.7868 20 6 7.7574 2.0301 0.4679 21 8 7.5662 3.1401 -0.4114 22 6 8.7755 3.8101 -0.7732 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.0103 1.1868 2.0163 29 1 2.7220 2.9434 1.5343 30 1 4.1028 -0.1950 -1.0681 31 1 4.3617 -0.1655 0.6926 32 1 7.6889 -0.0087 -0.9550 33 1 6.5186 -1.1535 -0.2562 34 1 8.0268 -3.2829 -2.7575 35 1 5.7295 2.1515 1.1846 36 1 6.5386 0.6032 1.5259 37 1 8.2235 2.3741 1.3913 38 1 8.4019 1.2934 -0.0117 39 1 9.2622 4.1912 0.1246 40 1 9.4413 3.1105 -1.2784 41 1 8.5453 4.6394 -1.4419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723125107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:09 Heat of formation + Delta-G solvation = -49.217967 kcal Electronic energy + Delta-G solvation = -18021.519046 eV Core-core repulsion = 15322.277969 eV Total energy + Delta-G solvation = -2699.241077 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.87006 -38.70799 -37.16406 -34.65423 -32.85047 -31.03561 -29.27006 -27.30946 -26.19488 -24.78169 -24.23845 -22.22062 -21.67965 -20.07574 -18.64380 -17.34769 -17.12486 -16.69208 -16.33301 -16.07325 -15.63258 -15.32860 -14.92098 -14.65047 -14.50460 -13.87914 -13.63563 -13.39241 -13.10495 -12.97071 -12.80537 -12.65257 -12.47367 -12.42092 -12.19014 -12.11040 -11.97070 -11.72402 -11.52618 -11.25636 -10.67775 -10.61924 -10.46241 -10.40796 -8.91394 -8.19596 -6.28063 1.38664 1.39495 1.53490 2.40160 2.91903 2.99987 3.12421 3.30088 3.81915 4.04678 4.07050 4.19971 4.31635 4.35238 4.46810 4.50505 4.56067 4.58476 4.59852 4.67578 4.71823 4.87070 4.88068 4.90734 4.94850 5.01325 5.05357 5.21668 5.22845 5.27656 5.32246 5.35328 5.46465 5.56046 5.67704 6.10023 6.36676 6.42909 6.72756 6.89168 7.41048 8.91344 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.009238 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.531575 B = 3030.392070 C = 4879.918981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.141 4.141 4 H 0.114 0.886 5 C -0.164 4.164 6 C -0.150 4.150 7 H 0.097 0.903 8 C 0.105 3.895 9 N -0.535 5.535 10 C 0.206 3.794 11 C -0.516 4.516 12 H 0.057 0.943 13 C 0.003 3.997 14 N -0.934 5.934 15 Si 0.964 3.036 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.277 1.277 19 C 0.057 3.943 20 C 0.070 3.930 21 O -0.398 6.398 22 C 0.027 3.973 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.058 0.942 31 H 0.017 0.983 32 H 0.009 0.991 33 H -0.039 1.039 34 H 0.264 0.736 35 H 0.090 0.910 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.029 0.971 39 H 0.057 0.943 40 H 0.029 0.971 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 9.392 7.073 13.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 C -0.160 4.160 4 H 0.132 0.868 5 C -0.201 4.201 6 C -0.168 4.168 7 H 0.115 0.885 8 C -0.023 4.023 9 N -0.259 5.259 10 C 0.080 3.920 11 C -0.554 4.554 12 H 0.075 0.925 13 C -0.195 4.195 14 N -0.575 5.575 15 Si 0.788 3.212 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.071 4.071 20 C -0.007 4.007 21 O -0.317 6.317 22 C -0.069 4.069 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.125 0.875 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.027 0.973 33 H -0.021 1.021 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.530 9.663 6.630 13.929 hybrid contribution 0.643 -1.358 -0.229 1.520 sum -6.887 8.305 6.401 12.545 Atomic orbital electron populations 1.21694 0.93883 1.01936 1.02287 1.21106 0.97128 0.94174 1.01184 1.22514 0.92743 0.98234 1.02459 0.86789 1.23210 1.03478 1.02587 0.90800 1.22239 0.93460 0.99295 1.01829 0.88526 1.21364 0.87857 0.94682 0.98401 1.61947 1.02116 1.32788 1.29047 1.19425 0.92599 0.85926 0.94050 1.21452 1.22409 1.10411 1.01138 0.92502 1.25848 0.95215 0.96203 1.02236 1.70079 1.29304 1.18548 1.39602 0.85417 0.78358 0.78082 0.79305 1.18989 1.20343 1.20251 1.22120 0.95870 0.97920 0.91164 1.22582 0.97041 0.88069 0.93021 1.87930 1.31443 1.44996 1.67324 1.22856 0.87001 0.96778 1.00274 0.92358 0.92418 0.91764 0.93286 0.92494 0.89121 0.87494 0.92391 0.96509 0.97269 1.02135 0.92759 0.89189 0.94516 0.90867 0.95301 0.92440 0.95237 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.87 71.98 0.71 -2.17 16 2 C -0.10 -2.60 5.30 30.60 0.16 -2.44 16 3 C -0.14 -3.75 5.74 -10.77 -0.06 -3.81 16 4 H 0.11 2.69 8.08 -2.38 -0.02 2.67 16 5 C -0.16 -4.16 9.82 30.61 0.30 -3.86 16 6 C -0.15 -4.91 5.00 -10.80 -0.05 -4.96 16 7 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 8 C 0.10 4.28 4.18 86.30 0.36 4.64 16 9 N -0.53 -24.29 4.39 -900.78 -3.96 -28.25 16 10 C 0.21 11.32 4.59 85.56 0.39 11.71 16 11 C -0.52 -30.24 8.18 25.60 0.21 -30.04 16 12 H 0.06 3.35 7.53 -2.91 -0.02 3.33 16 13 C 0.00 0.15 5.46 84.66 0.46 0.62 16 14 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 15 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 C 0.06 2.15 5.19 86.30 0.45 2.60 16 20 C 0.07 2.49 6.01 71.98 0.43 2.92 16 21 O -0.40 -14.72 10.65 -148.98 -1.59 -16.31 16 22 C 0.03 0.76 11.01 113.37 1.25 2.01 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.05 1.50 7.62 -2.39 -0.02 1.48 16 27 H 0.06 1.53 7.88 -2.39 -0.02 1.51 16 28 H 0.09 2.27 7.93 -2.39 -0.02 2.25 16 29 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.06 2.69 6.25 -2.39 -0.01 2.68 16 31 H 0.02 0.67 7.78 -2.39 -0.02 0.65 16 32 H 0.01 0.55 5.97 -2.39 -0.01 0.53 16 33 H -0.04 -2.33 8.11 -2.38 -0.02 -2.35 16 34 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.09 3.02 7.28 -2.39 -0.02 3.00 16 36 H 0.04 1.35 8.12 -2.39 -0.02 1.33 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.03 1.19 6.15 -2.39 -0.01 1.17 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -66.36 329.81 2.34 -64.02 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.96 Total: 12.59 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 4.61 Total: -22.78 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -3.67 Total: -85.02 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -1.59 Total: -16.31 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -66.36 2.34 -64.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723125107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.798 kcal (2) G-P(sol) polarization free energy of solvation -66.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds