Wall clock time and date at job start Mon Mar 30 2020 05:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46758 * 2 1 4 4 C 1.53001 * 109.47290 * 239.99928 * 2 1 3 5 5 C 1.52994 * 109.47227 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47084 * 59.99589 * 5 4 2 7 7 C 1.53001 * 109.47424 * 300.00291 * 6 5 4 8 8 H 1.08998 * 109.46995 * 299.99498 * 7 6 5 9 9 N 1.46900 * 109.46986 * 180.02562 * 7 6 5 10 10 C 1.46906 * 110.99630 * 183.95400 * 9 7 6 11 11 C 1.46898 * 111.00159 * 59.99849 * 9 7 6 12 12 C 1.53004 * 109.46833 * 200.36433 * 11 9 7 13 13 H 1.08996 * 109.47571 * 53.74737 * 12 11 9 14 14 O 1.42902 * 109.47026 * 293.74191 * 12 11 9 15 15 C 1.50701 * 109.46818 * 173.74678 * 12 11 9 16 16 H 1.08004 * 120.00190 * 359.97438 * 15 12 11 17 17 C 1.37881 * 119.99815 * 180.02562 * 15 12 11 18 18 N 1.31518 * 119.99879 * 180.02562 * 17 15 12 19 19 Si 1.86797 * 120.00181 * 359.97438 * 17 15 12 20 20 H 1.48494 * 109.47193 * 89.99973 * 19 17 15 21 21 H 1.48499 * 109.47153 * 210.00290 * 19 17 15 22 22 H 1.48507 * 109.47099 * 330.00277 * 19 17 15 23 23 C 1.52994 * 109.47227 * 59.99797 * 7 6 5 24 24 H 1.08998 * 109.47554 * 300.00202 * 1 2 3 25 25 H 1.08995 * 109.47489 * 60.00323 * 1 2 3 26 26 H 1.09007 * 109.46709 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46825 * 300.00056 * 4 2 1 28 28 H 1.08995 * 109.47059 * 59.99486 * 4 2 1 29 29 H 1.08998 * 109.47491 * 179.97438 * 5 4 2 30 30 H 1.08998 * 109.47377 * 300.00065 * 5 4 2 31 31 H 1.09003 * 109.47474 * 180.02562 * 6 5 4 32 32 H 1.09007 * 109.47084 * 60.00435 * 6 5 4 33 33 H 1.08991 * 109.47161 * 294.52617 * 10 9 7 34 34 H 1.08995 * 109.47168 * 54.53295 * 10 9 7 35 35 H 1.09004 * 109.46830 * 174.52695 * 10 9 7 36 36 H 1.08996 * 109.47227 * 320.36213 * 11 9 7 37 37 H 1.08995 * 109.46958 * 80.36695 * 11 9 7 38 38 H 0.96697 * 114.00078 * 300.00088 * 14 12 11 39 39 H 0.96998 * 120.00169 * 179.97438 * 18 17 15 40 40 H 1.09007 * 109.46805 * 60.00147 * 23 7 6 41 41 H 1.08998 * 109.47491 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4415 -0.0002 7 6 3.5705 -0.7202 1.2490 8 1 3.9335 0.3076 1.2488 9 7 4.0612 -1.4120 2.4484 10 6 3.5145 -0.8026 3.6682 11 6 5.5297 -1.4305 2.4818 12 6 6.0046 -2.5473 3.4135 13 1 5.5476 -3.4901 3.1131 14 8 5.6251 -2.2407 4.7567 15 6 7.5045 -2.6671 3.3302 16 1 8.0631 -2.0125 2.6776 17 6 8.1635 -3.6132 4.0863 18 7 9.4726 -3.7175 4.0139 19 14 7.1973 -4.7460 5.2144 20 1 6.8089 -5.9713 4.4710 21 1 8.0388 -5.1196 6.3795 22 1 5.9760 -4.0473 5.6895 23 6 2.0405 -0.7208 1.2493 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.6767 -1.7490 -1.2492 28 1 1.6767 -0.2075 -2.1392 29 1 3.9334 -1.2349 -2.1392 30 1 3.9330 0.3071 -1.2498 31 1 5.1706 -1.4407 -0.0001 32 1 3.7176 -2.4693 0.0000 33 1 3.8964 0.2132 3.7695 34 1 2.4266 -0.7772 3.6056 35 1 3.8148 -1.3918 4.5347 36 1 5.9137 -1.6075 1.4772 37 1 5.8969 -0.4716 2.8474 38 1 5.9966 -1.4129 5.0911 39 1 9.9363 -4.3828 4.5461 40 1 1.6776 -1.7487 1.2496 41 1 1.6771 -0.2066 2.1390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929274439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:55 Heat of formation + Delta-G solvation = -65.044764 kcal Electronic energy + Delta-G solvation = -18447.154721 eV Core-core repulsion = 15747.227343 eV Total energy + Delta-G solvation = -2699.927378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.33749 -36.90337 -34.79022 -32.32566 -32.18135 -29.88938 -28.62721 -26.73198 -25.38028 -23.75715 -21.59738 -20.80517 -19.91624 -19.57268 -17.16550 -15.88534 -15.07315 -14.79620 -14.71392 -14.31752 -14.17728 -14.01326 -13.53746 -13.21857 -13.00027 -12.54632 -12.46131 -12.34489 -11.94671 -11.61652 -11.38948 -11.11061 -10.98392 -10.92126 -10.84735 -10.65956 -10.45383 -10.36995 -10.11292 -9.90289 -9.67458 -8.98065 -8.58312 -8.21897 -7.63523 -6.09307 -4.20110 3.43904 3.52543 3.79695 4.31308 4.58192 4.69033 4.75398 4.95666 5.18484 5.24782 5.25719 5.42090 5.50678 5.51704 5.59348 5.65624 5.73435 5.79416 5.82714 5.89701 5.93115 5.96682 6.01577 6.13526 6.18182 6.26083 6.31633 6.32773 6.35295 6.42041 6.61236 6.63649 6.83969 7.34132 7.56716 7.69944 7.82563 8.32161 8.86693 9.06444 9.56107 11.01420 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.039468 B = 0.005651 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.260950 B = 4954.032645 C = 5315.186497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.065 0.935 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.116 4.116 7 C 0.084 3.916 8 H 0.030 0.970 9 N -0.535 5.535 10 C 0.014 3.986 11 C 0.036 3.964 12 C 0.202 3.798 13 H 0.062 0.938 14 O -0.577 6.577 15 C -0.564 4.564 16 H 0.070 0.930 17 C 0.083 3.917 18 N -0.895 5.895 19 Si 0.873 3.127 20 H -0.288 1.288 21 H -0.298 1.298 22 H -0.217 1.217 23 C -0.107 4.107 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.011 0.989 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.026 0.974 38 H 0.351 0.649 39 H 0.264 0.736 40 H 0.069 0.931 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.759 7.546 -7.394 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.025 4.025 8 H 0.048 0.952 9 N -0.259 5.259 10 C -0.134 4.134 11 C -0.091 4.091 12 C 0.145 3.855 13 H 0.080 0.920 14 O -0.383 6.383 15 C -0.602 4.602 16 H 0.088 0.912 17 C -0.121 4.121 18 N -0.533 5.533 19 Si 0.700 3.300 20 H -0.214 1.214 21 H -0.225 1.225 22 H -0.139 1.139 23 C -0.145 4.145 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.044 0.956 38 H 0.197 0.803 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.104 6.415 -7.414 18.854 hybrid contribution 0.480 0.775 0.506 1.043 sum -15.625 7.190 -6.908 18.535 Atomic orbital electron populations 1.21813 0.95440 1.01741 1.01271 1.21129 0.95158 0.99475 0.95278 0.91656 1.21596 0.95747 1.00646 0.97048 1.21522 0.95412 1.00577 0.98046 1.21674 1.00906 0.99971 0.92843 1.21598 0.94524 0.95174 0.91155 0.95248 1.62094 1.09454 1.53158 1.01148 1.22731 0.98955 0.97031 0.94713 1.22929 0.84979 0.99221 1.01957 1.19771 0.93852 0.93279 0.78609 0.92026 1.86665 1.75468 1.44003 1.32164 1.21527 0.90718 1.20248 1.27660 0.91218 1.24993 0.94648 0.96501 0.95940 1.69965 1.07956 1.34741 1.40597 0.86989 0.82641 0.80119 0.80249 1.21426 1.22473 1.13894 1.21697 0.94816 1.01144 0.96800 0.92889 0.92977 0.92680 0.91910 0.92480 0.91969 0.92388 0.91316 0.91110 0.97085 0.92650 0.88422 0.90526 0.95581 0.80299 0.92651 0.91209 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.20 37.16 0.34 -0.96 16 2 C -0.09 -0.95 2.72 -90.62 -0.25 -1.20 16 3 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -1.15 5.20 -26.73 -0.14 -1.29 16 5 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 6 C -0.12 -1.64 5.05 -26.73 -0.13 -1.77 16 7 C 0.08 1.23 1.94 -67.72 -0.13 1.10 16 8 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 9 N -0.53 -9.35 4.56 -234.89 -1.07 -10.42 16 10 C 0.01 0.22 8.89 60.07 0.53 0.75 16 11 C 0.04 0.73 4.60 -3.82 -0.02 0.71 16 12 C 0.20 4.77 2.53 -27.88 -0.07 4.70 16 13 H 0.06 1.55 7.57 -51.93 -0.39 1.16 16 14 O -0.58 -12.92 7.33 -35.23 -0.26 -13.17 16 15 C -0.56 -15.73 9.34 -34.44 -0.32 -16.05 16 16 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 17 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 18 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 19 Si 0.87 22.13 26.99 -169.99 -4.59 17.54 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 22 H -0.22 -5.35 5.31 56.52 0.30 -5.05 16 23 C -0.11 -1.33 4.14 -26.73 -0.11 -1.44 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.06 6.03 -51.93 -0.31 0.75 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.01 0.17 8.05 -51.93 -0.42 -0.25 16 34 H 0.05 0.79 5.93 -51.93 -0.31 0.48 16 35 H 0.10 1.73 5.57 -51.93 -0.29 1.44 16 36 H 0.08 1.55 5.52 -51.93 -0.29 1.26 16 37 H 0.03 0.52 7.93 -51.93 -0.41 0.11 16 38 H 0.35 7.05 9.04 45.56 0.41 7.46 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.76 6.23 -51.93 -0.32 0.43 16 LS Contribution 305.08 15.07 4.60 4.60 Total: -1.00 -30.13 305.08 -7.74 -37.87 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.64 Total: 4.96 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -0.55 Total: -14.62 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.30 Total: -37.17 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.26 Total: -13.17 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.59 Total: 17.54 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.13 -7.74 -37.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929274439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.179 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds