Wall clock time and date at job start Mon Mar 30 2020 05:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47413 * 2 1 4 4 C 1.53003 * 109.47163 * 120.00214 * 2 1 3 5 5 C 1.53004 * 109.46978 * 59.99890 * 4 2 1 6 6 C 1.52994 * 109.47214 * 60.00333 * 5 4 2 7 7 C 1.53007 * 109.47209 * 299.99653 * 6 5 4 8 8 H 1.08996 * 109.47243 * 300.00716 * 7 6 5 9 9 N 1.46900 * 109.47400 * 179.97438 * 7 6 5 10 10 C 1.46903 * 110.99972 * 306.05010 * 9 7 6 11 11 C 1.46896 * 110.99776 * 70.00113 * 9 7 6 12 12 C 1.53001 * 109.47230 * 170.00130 * 11 9 7 13 13 H 1.08998 * 109.47065 * 59.99662 * 12 11 9 14 14 O 1.42908 * 109.46829 * 300.00177 * 12 11 9 15 15 C 1.50697 * 109.46995 * 180.02562 * 12 11 9 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 12 11 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 12 20 20 H 1.48498 * 109.47416 * 59.99812 * 19 17 15 21 21 H 1.48508 * 109.46609 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46903 * 299.99397 * 19 17 15 23 23 C 1.53004 * 109.47157 * 240.00005 * 2 1 3 24 24 H 1.09003 * 109.46786 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46937 * 300.00323 * 1 2 3 26 26 H 1.09003 * 109.46495 * 59.99953 * 1 2 3 27 27 H 1.09002 * 109.46996 * 179.97438 * 4 2 1 28 28 H 1.08997 * 109.46972 * 300.00075 * 4 2 1 29 29 H 1.08998 * 109.46763 * 180.02562 * 5 4 2 30 30 H 1.08996 * 109.46715 * 299.99938 * 5 4 2 31 31 H 1.09001 * 109.47374 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47569 * 59.99698 * 6 5 4 33 33 H 1.08996 * 109.46926 * 183.95025 * 10 9 7 34 34 H 1.08998 * 109.47045 * 303.95299 * 10 9 7 35 35 H 1.09001 * 109.47220 * 63.95437 * 10 9 7 36 36 H 1.08998 * 109.47372 * 49.99981 * 11 9 7 37 37 H 1.09006 * 109.47513 * 290.00152 * 11 9 7 38 38 H 0.96704 * 113.99704 * 299.99964 * 14 12 11 39 39 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.46967 * 179.97438 * 23 2 1 41 41 H 1.08994 * 109.46921 * 60.00191 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1638 -1.2493 8 1 0.4400 -2.1637 -1.2493 9 7 2.0202 -2.8559 -2.4488 10 6 3.4815 -3.0014 -2.4124 11 6 1.3650 -4.1610 -2.6081 12 6 1.7076 -4.7392 -3.9827 13 1 2.7874 -4.8620 -4.0663 14 8 1.2492 -3.8484 -5.0018 15 6 1.0349 -6.0777 -4.1463 16 1 0.4279 -6.4783 -3.3480 17 6 1.1988 -6.7935 -5.3134 18 7 1.9377 -6.3055 -6.2858 19 14 0.3713 -8.4562 -5.5133 20 1 -1.1001 -8.2942 -5.3954 21 1 0.7028 -9.0167 -6.8480 22 1 0.8541 -9.3797 -4.4553 23 6 2.0400 -0.7213 -1.2493 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 3.1301 -0.7217 1.2490 28 1 1.6767 -0.2075 2.1392 29 1 1.8930 -2.6775 2.1394 30 1 0.4400 -2.1637 1.2492 31 1 1.6763 -3.9126 -0.0003 32 1 3.1300 -2.8851 -0.0001 33 1 3.8249 -3.4535 -3.3428 34 1 3.9415 -2.0204 -2.2937 35 1 3.7625 -3.6383 -1.5736 36 1 0.2852 -4.0381 -2.5245 37 1 1.7146 -4.8405 -1.8308 38 1 0.2949 -3.6923 -4.9876 39 1 2.0526 -6.8088 -7.1070 40 1 3.1300 -0.7208 -1.2495 41 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929274442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:12 Heat of formation + Delta-G solvation = -88.353164 kcal Electronic energy + Delta-G solvation = -18537.979752 eV Core-core repulsion = 15837.041646 eV Total energy + Delta-G solvation = -2700.938106 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.78289 -38.21577 -36.24494 -34.20795 -32.49685 -31.20789 -29.53315 -27.96407 -27.33187 -25.58547 -23.28356 -22.56714 -21.20259 -19.31264 -19.03705 -17.13456 -16.65520 -16.42770 -16.04117 -16.00155 -15.39911 -14.90735 -14.80785 -14.54798 -14.50439 -14.00879 -13.54215 -13.23586 -13.14089 -12.86642 -12.78337 -12.58700 -12.56919 -12.43762 -12.17734 -12.03225 -11.90536 -11.69143 -11.26041 -11.07408 -10.98260 -10.77873 -10.68293 -10.06087 -8.96479 -8.12464 -6.38930 1.40156 1.42100 1.50321 2.38673 3.10481 3.14524 3.75090 3.86748 4.01947 4.21959 4.26037 4.33582 4.36529 4.41954 4.43345 4.55537 4.61791 4.62936 4.72294 4.79310 4.85596 4.92930 5.00233 5.04904 5.08754 5.14548 5.15716 5.25752 5.29744 5.36695 5.45819 5.51128 5.60785 5.65496 5.77510 6.04464 6.26482 6.40541 6.74892 7.35297 7.63427 8.91842 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041833 B = 0.005284 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.163640 B = 5297.387889 C = 5447.457004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.081 0.919 4 C -0.110 4.110 5 C -0.112 4.112 6 C -0.149 4.149 7 C 0.084 3.916 8 H 0.073 0.927 9 N -0.538 5.538 10 C 0.029 3.971 11 C 0.052 3.948 12 C 0.237 3.763 13 H 0.019 0.981 14 O -0.570 6.570 15 C -0.590 4.590 16 H 0.057 0.943 17 C 0.026 3.974 18 N -0.900 5.900 19 Si 0.960 3.040 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.269 1.269 23 C -0.099 4.099 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.027 0.973 36 H 0.062 0.938 37 H 0.023 0.977 38 H 0.351 0.649 39 H 0.261 0.739 40 H 0.060 0.940 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.208 10.908 15.190 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 H 0.099 0.901 4 C -0.147 4.147 5 C -0.150 4.150 6 C -0.188 4.188 7 C -0.024 4.024 8 H 0.091 0.909 9 N -0.260 5.260 10 C -0.119 4.119 11 C -0.076 4.076 12 C 0.179 3.821 13 H 0.037 0.963 14 O -0.373 6.373 15 C -0.629 4.629 16 H 0.076 0.924 17 C -0.176 4.176 18 N -0.537 5.537 19 Si 0.784 3.216 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.137 4.137 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.195 0.805 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.600 11.180 14.440 18.272 hybrid contribution -0.533 -1.742 0.259 1.840 sum -1.133 9.438 14.699 17.504 Atomic orbital electron populations 1.21926 0.95134 1.01753 1.01872 1.21087 0.96149 0.99276 0.93955 0.90084 1.21556 1.00510 0.94902 0.97762 1.21484 1.01012 0.96044 0.96434 1.22178 1.01076 0.98984 0.96566 1.21839 0.99333 0.94325 0.86888 0.90860 1.62157 1.05393 1.20358 1.38082 1.22335 0.88601 1.01296 0.99669 1.22627 0.98093 0.88829 0.98028 1.19181 0.93571 0.86305 0.83031 0.96313 1.86500 1.25596 1.68002 1.57192 1.22038 1.33187 1.05615 1.02028 0.92443 1.25901 0.94973 1.01310 0.95413 1.70225 1.38568 1.39053 1.05834 0.85613 0.79266 0.79389 0.77294 1.19111 1.20916 1.19387 1.21551 1.00328 0.93673 0.98171 0.92979 0.91588 0.93055 0.92066 0.90514 0.91568 0.91593 0.93779 0.92027 0.93985 0.90102 0.95490 0.91916 0.95874 0.80479 0.92994 0.92145 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.50 71.98 0.61 -2.11 16 2 C -0.09 -1.60 3.20 -10.79 -0.03 -1.63 16 3 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 4 C -0.11 -1.88 5.45 30.60 0.17 -1.71 16 5 C -0.11 -2.22 5.65 30.59 0.17 -2.05 16 6 C -0.15 -3.87 4.45 30.59 0.14 -3.73 16 7 C 0.08 2.43 1.92 44.92 0.09 2.52 16 8 H 0.07 2.19 6.22 -2.39 -0.01 2.17 16 9 N -0.54 -19.86 4.58 -897.03 -4.11 -23.96 16 10 C 0.03 1.03 8.44 127.69 1.08 2.11 16 11 C 0.05 2.23 4.13 86.30 0.36 2.59 16 12 C 0.24 12.55 2.70 29.85 0.08 12.63 16 13 H 0.02 1.13 6.55 -2.39 -0.02 1.11 16 14 O -0.57 -31.14 12.59 -148.98 -1.88 -33.01 16 15 C -0.59 -33.22 8.76 25.60 0.22 -32.99 16 16 H 0.06 3.11 7.74 -2.92 -0.02 3.08 16 17 C 0.03 1.51 5.40 84.66 0.46 1.96 16 18 N -0.90 -54.99 12.83 21.45 0.28 -54.72 16 19 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 C -0.10 -2.43 4.66 30.60 0.14 -2.28 16 24 H 0.05 1.05 4.81 -2.39 -0.01 1.04 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.29 6.43 -2.39 -0.02 1.28 16 31 H 0.04 1.29 6.91 -2.39 -0.02 1.27 16 32 H 0.06 1.62 6.41 -2.39 -0.02 1.60 16 33 H 0.04 1.74 6.47 -2.39 -0.02 1.73 16 34 H 0.08 2.44 6.30 -2.39 -0.02 2.42 16 35 H 0.03 0.90 6.46 -2.39 -0.02 0.88 16 36 H 0.06 2.60 7.93 -2.39 -0.02 2.59 16 37 H 0.02 0.99 7.06 -2.38 -0.02 0.97 16 38 H 0.35 17.24 9.04 -74.05 -0.67 16.57 16 39 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.06 1.47 6.47 -2.39 -0.02 1.45 16 41 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -64.30 304.21 0.13 -64.16 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.34 Total: 26.29 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 3.48 Total: -24.69 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -3.83 Total: -78.68 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.88 Total: -33.01 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -64.30 0.13 -64.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929274442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.188 kcal (2) G-P(sol) polarization free energy of solvation -64.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds