Wall clock time and date at job start Mon Mar 30 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 108.97538 * 2 1 4 4 C 1.53811 * 109.05022 * 241.05946 * 2 1 3 5 5 C 1.54174 * 111.90810 * 198.45138 * 4 2 1 6 6 C 1.50747 * 112.61183 * 318.52292 * 5 4 2 7 7 C 1.54435 * 109.03127 * 93.00679 * 6 5 4 8 8 H 1.09004 * 109.01989 * 43.19803 * 7 6 5 9 9 C 1.52999 * 109.02115 * 162.02005 * 7 6 5 10 10 N 1.39777 * 111.76613 * 282.61165 * 7 6 5 11 11 C 1.46901 * 110.99587 * 189.13764 * 10 7 6 12 12 C 1.53003 * 109.46964 * 165.16792 * 11 10 7 13 13 H 1.08998 * 109.47032 * 54.92178 * 12 11 10 14 14 O 1.42898 * 109.47024 * 294.92186 * 12 11 10 15 15 C 1.50697 * 109.47214 * 174.92391 * 12 11 10 16 16 H 1.07998 * 119.99824 * 0.02562 * 15 12 11 17 17 C 1.37882 * 119.99805 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00078 * 359.97438 * 17 15 12 19 19 Si 1.86806 * 119.99721 * 180.02562 * 17 15 12 20 20 H 1.48489 * 109.47274 * 89.99936 * 19 17 15 21 21 H 1.48495 * 109.46685 * 210.00059 * 19 17 15 22 22 H 1.48500 * 109.46870 * 329.99683 * 19 17 15 23 23 C 1.47621 * 114.76963 * 62.27633 * 10 7 6 24 24 H 1.09001 * 109.46995 * 178.94739 * 1 2 3 25 25 H 1.09003 * 109.47176 * 298.94390 * 1 2 3 26 26 H 1.08995 * 109.47710 * 58.94133 * 1 2 3 27 27 H 1.09000 * 108.98525 * 77.84731 * 4 2 1 28 28 H 1.09005 * 108.97875 * 319.05209 * 4 2 1 29 29 H 1.09002 * 108.84946 * 79.33223 * 5 4 2 30 30 H 1.08997 * 108.85393 * 197.71492 * 5 4 2 31 31 H 1.09002 * 109.54697 * 212.87796 * 6 5 4 32 32 H 1.09006 * 109.54278 * 333.14293 * 6 5 4 33 33 H 1.08998 * 109.47401 * 69.73238 * 9 7 6 34 34 H 1.09004 * 109.47106 * 189.73186 * 9 7 6 35 35 H 1.09006 * 109.47584 * 309.73008 * 9 7 6 36 36 H 1.09005 * 109.47393 * 285.15972 * 11 10 7 37 37 H 1.08994 * 109.47774 * 45.16598 * 11 10 7 38 38 H 0.96701 * 114.00420 * 300.00200 * 14 12 11 39 39 H 0.96997 * 119.99483 * 179.97438 * 18 17 15 40 40 H 1.09009 * 109.74393 * 36.81768 * 23 10 7 41 41 H 1.09000 * 109.75000 * 157.49454 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8844 1.0307 0.0000 4 6 2.0320 -0.7035 -1.2723 5 6 3.5024 -1.1485 -1.1415 6 6 4.3639 -0.1116 -0.4670 7 6 4.4165 -0.4085 1.0477 8 1 4.5508 -1.4802 1.1952 9 6 5.6083 0.3303 1.6596 10 7 3.2468 -0.0025 1.6964 11 6 3.3961 -0.0908 3.1551 12 6 2.2688 0.6920 3.8314 13 1 1.3068 0.3296 3.4692 14 8 2.4016 2.0809 3.5228 15 6 2.3486 0.4993 5.3239 16 1 3.1259 -0.1193 5.7477 17 6 1.4299 1.1135 6.1484 18 7 0.4843 1.8679 5.6324 19 14 1.5293 0.8752 7.9985 20 1 2.3922 1.9302 8.5879 21 1 0.1673 0.9658 8.5831 22 1 2.1074 -0.4601 8.2952 23 6 2.0201 -0.6901 1.2475 24 1 -0.3633 -1.0275 -0.0189 25 1 -0.3634 0.4974 0.8993 26 1 -0.3634 0.5301 -0.8803 27 1 1.9427 -0.0182 -2.1152 28 1 1.4118 -1.5798 -1.4610 29 1 3.5410 -2.0704 -0.5612 30 1 3.9010 -1.3443 -2.1369 31 1 5.3715 -0.1492 -0.8811 32 1 3.9380 0.8784 -0.6299 33 1 5.4128 1.4026 1.6542 34 1 5.7570 -0.0067 2.6855 35 1 6.5044 0.1214 1.0751 36 1 3.3483 -1.1354 3.4627 37 1 4.3577 0.3306 3.4481 38 1 3.2361 2.4712 3.8166 39 1 -0.1622 2.2997 6.2125 40 1 2.2426 -1.7344 1.0279 41 1 1.2592 -0.6316 2.0258 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929706554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:41 Heat of formation + Delta-G solvation = -56.677373 kcal Electronic energy + Delta-G solvation = -18916.869971 eV Core-core repulsion = 16217.305430 eV Total energy + Delta-G solvation = -2699.564541 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.57846 -35.89998 -34.65459 -32.97025 -32.01810 -29.55791 -28.25039 -26.34606 -25.19502 -24.02504 -22.22532 -20.56005 -19.56367 -18.81640 -16.91118 -15.69122 -15.03123 -14.82060 -14.73285 -14.49308 -13.69390 -13.58018 -13.26928 -12.99919 -12.60772 -12.53400 -12.17976 -12.01955 -11.69350 -11.37720 -11.10117 -11.03404 -10.90305 -10.86340 -10.60118 -10.42374 -10.36248 -10.07574 -9.95578 -9.85983 -9.78182 -8.86618 -8.50882 -8.02848 -7.38116 -5.96028 -4.14020 3.29450 3.36517 3.38955 4.36731 4.54065 4.94143 5.07334 5.09485 5.30938 5.32415 5.38923 5.54843 5.67047 5.71930 5.87511 5.93268 5.98520 6.00571 6.05966 6.12309 6.17247 6.21598 6.25900 6.33787 6.38750 6.45864 6.46776 6.56096 6.60231 6.68563 6.81381 6.87873 6.94475 7.76187 7.82393 7.90686 8.19623 8.27450 8.90449 9.51741 9.68861 11.07854 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030529 B = 0.006873 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.943836 B = 4072.960599 C = 4636.336637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.085 0.915 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.112 4.112 7 C 0.105 3.895 8 H 0.013 0.987 9 C -0.151 4.151 10 N -0.542 5.542 11 C 0.027 3.973 12 C 0.238 3.762 13 H 0.055 0.945 14 O -0.554 6.554 15 C -0.574 4.574 16 H 0.053 0.947 17 C 0.080 3.920 18 N -0.858 5.858 19 Si 0.887 3.113 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.072 3.928 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.022 0.978 37 H 0.072 0.928 38 H 0.340 0.660 39 H 0.259 0.741 40 H 0.027 0.973 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 -4.703 -11.587 13.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.103 0.897 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.150 4.150 7 C -0.006 4.006 8 H 0.030 0.970 9 C -0.208 4.208 10 N -0.265 5.265 11 C -0.099 4.099 12 C 0.180 3.820 13 H 0.073 0.927 14 O -0.355 6.355 15 C -0.613 4.613 16 H 0.071 0.929 17 C -0.126 4.126 18 N -0.494 5.494 19 Si 0.714 3.286 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.055 4.055 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.090 0.910 38 H 0.183 0.817 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.567 -4.254 -11.951 13.482 hybrid contribution 0.690 -1.020 1.541 1.973 sum 5.257 -5.274 -10.409 12.798 Atomic orbital electron populations 1.21893 0.95585 1.00993 1.01896 1.20964 0.94892 1.01320 0.93467 0.89683 1.21986 0.95278 0.99694 0.97849 1.21392 0.95382 0.99004 0.99823 1.21536 0.98865 1.00197 0.94426 1.20386 0.90756 0.95666 0.93770 0.96981 1.22099 0.96465 1.01852 1.00399 1.58772 1.01894 1.59634 1.06240 1.23189 1.02626 0.99089 0.85011 1.19352 0.92173 0.79028 0.91486 0.92739 1.86568 1.40685 1.25637 1.82617 1.21690 1.14727 1.32255 0.92594 0.92898 1.25014 0.94803 0.94374 0.98392 1.70083 1.15106 1.29419 1.34759 0.86714 0.77354 0.78545 0.85991 1.20553 1.21160 1.19953 1.21839 0.92522 0.94087 0.97033 0.93455 0.91838 0.93352 0.92697 0.92803 0.92753 0.92933 0.92237 0.90684 0.91481 0.92372 0.93230 0.95928 0.91021 0.81746 0.93081 0.95466 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.84 37.16 0.33 -1.80 16 2 C -0.09 -1.35 2.27 -91.32 -0.21 -1.55 16 3 H 0.08 1.48 7.25 -51.93 -0.38 1.10 16 4 C -0.11 -1.41 5.30 -25.70 -0.14 -1.54 16 5 C -0.12 -1.47 5.31 -27.25 -0.14 -1.62 16 6 C -0.11 -1.50 5.00 -27.11 -0.14 -1.63 16 7 C 0.10 1.63 2.06 -70.63 -0.15 1.48 16 8 H 0.01 0.20 7.55 -51.93 -0.39 -0.19 16 9 C -0.15 -2.18 8.29 37.16 0.31 -1.87 16 10 N -0.54 -9.85 3.72 -231.71 -0.86 -10.72 16 11 C 0.03 0.57 4.19 -3.82 -0.02 0.55 16 12 C 0.24 6.01 2.80 -27.88 -0.08 5.93 16 13 H 0.06 1.52 6.12 -51.93 -0.32 1.20 16 14 O -0.55 -14.45 12.68 -35.23 -0.45 -14.89 16 15 C -0.57 -15.81 8.76 -34.44 -0.30 -16.11 16 16 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 17 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 18 N -0.86 -25.46 12.84 55.43 0.71 -24.74 16 19 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.07 1.26 4.69 -4.55 -0.02 1.24 16 24 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 25 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.65 7.96 -51.93 -0.41 0.23 16 29 H 0.05 0.71 6.58 -51.93 -0.34 0.37 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.70 7.88 -51.93 -0.41 0.29 16 32 H 0.07 1.08 7.10 -51.93 -0.37 0.72 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.87 6.28 -51.93 -0.33 0.55 16 35 H 0.05 0.60 7.94 -51.93 -0.41 0.19 16 36 H 0.02 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.07 1.44 5.28 -51.93 -0.27 1.16 16 38 H 0.34 8.01 9.04 45.56 0.41 8.42 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.03 0.45 6.66 -51.92 -0.35 0.11 16 41 H 0.08 1.68 5.32 -51.93 -0.28 1.40 16 LS Contribution 306.85 15.07 4.62 4.62 Total: -1.00 -29.39 306.85 -7.98 -37.37 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.33 Total: 6.89 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -0.65 Total: -14.76 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.15 Total: -35.46 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.45 Total: -14.89 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.39 -7.98 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929706554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.309 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds