Wall clock time and date at job start Mon Mar 30 2020 03:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46839 * 2 1 4 4 H 1.09005 * 109.50879 * 55.07549 * 3 2 1 5 5 C 1.53125 * 109.50668 * 295.00170 * 3 2 1 6 6 C 1.53114 * 109.16368 * 182.36739 * 5 3 2 7 7 C 1.53037 * 109.31211 * 57.63311 * 6 5 3 8 8 H 1.09000 * 109.46461 * 180.82902 * 7 6 5 9 9 C 1.52996 * 109.46365 * 60.85389 * 7 6 5 10 10 N 1.46854 * 109.52285 * 300.88400 * 7 6 5 11 11 C 1.46895 * 110.99648 * 185.80147 * 10 7 6 12 12 C 1.53005 * 109.47255 * 169.69908 * 11 10 7 13 13 H 1.09000 * 109.46952 * 59.99912 * 12 11 10 14 14 O 1.42897 * 109.46961 * 300.00184 * 12 11 10 15 15 C 1.50694 * 109.47308 * 179.97438 * 12 11 10 16 16 H 1.08002 * 120.00337 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00026 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99970 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99939 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47262 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46865 * 120.00439 * 19 17 15 22 22 H 1.48499 * 109.47212 * 240.00258 * 19 17 15 23 23 C 1.46840 * 111.23238 * 61.67711 * 10 7 6 24 24 H 1.09002 * 109.46975 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47437 * 299.99750 * 1 2 3 26 26 H 1.09004 * 109.47329 * 59.99898 * 1 2 3 27 27 H 1.08995 * 109.46855 * 240.00222 * 2 1 3 28 28 H 1.08993 * 109.47137 * 119.99654 * 2 1 3 29 29 H 1.08998 * 109.52257 * 62.45932 * 5 3 2 30 30 H 1.09004 * 109.56800 * 302.30642 * 5 3 2 31 31 H 1.09002 * 109.50377 * 177.59436 * 6 5 3 32 32 H 1.09003 * 109.50316 * 297.67431 * 6 5 3 33 33 H 1.08997 * 109.47194 * 60.00377 * 9 7 6 34 34 H 1.09003 * 109.47353 * 180.02562 * 9 7 6 35 35 H 1.08997 * 109.47365 * 300.00286 * 9 7 6 36 36 H 1.09003 * 109.47184 * 289.69986 * 11 10 7 37 37 H 1.09000 * 109.47212 * 49.69980 * 11 10 7 38 38 H 0.96697 * 114.00255 * 299.99596 * 14 12 11 39 39 H 0.96996 * 119.99938 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.46294 * 178.26219 * 23 10 7 41 41 H 1.09005 * 109.46534 * 58.30014 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6067 1.9817 0.8424 5 6 1.6352 2.1279 -1.3081 6 6 2.1996 3.5511 -1.3254 7 6 3.7205 3.4943 -1.1653 8 1 4.1235 4.5071 -1.1625 9 6 4.3267 2.7078 -2.3293 10 7 4.0563 2.8298 0.1005 11 6 5.5025 2.8794 0.3535 12 6 5.7864 2.4139 1.7831 13 1 5.4301 1.3916 1.9098 14 8 5.1116 3.2712 2.7060 15 6 7.2699 2.4641 2.0425 16 1 7.9431 2.7953 1.2656 17 6 7.7679 2.0882 3.2720 18 7 6.9482 1.6854 4.2183 19 14 9.6071 2.1498 3.5933 20 1 10.3063 2.6340 2.3761 21 1 9.8816 3.0746 4.7223 22 1 10.0953 0.7901 3.9373 23 6 3.5655 1.4460 0.1212 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 0.5481 2.1663 -1.3780 30 1 2.0350 1.5671 -2.1530 31 1 1.9510 4.0297 -2.2727 32 1 1.7684 4.1236 -0.5042 33 1 4.0784 3.2007 -3.2692 34 1 5.4100 2.6669 -2.2152 35 1 3.9236 1.6951 -2.3326 36 1 6.0171 2.2254 -0.3505 37 1 5.8587 3.9017 0.2268 38 1 5.3796 4.1986 2.6494 39 1 7.2986 1.4206 5.0831 40 1 3.8564 0.9715 1.0584 41 1 3.9974 0.8948 -0.7141 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930660151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:03 Heat of formation + Delta-G solvation = -69.693508 kcal Electronic energy + Delta-G solvation = -18646.792232 eV Core-core repulsion = 15946.663269 eV Total energy + Delta-G solvation = -2700.128963 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.50264 -35.90796 -34.59262 -32.22278 -31.97058 -29.81359 -28.27149 -26.91043 -24.77434 -23.39296 -22.95626 -20.60390 -19.93992 -18.32144 -16.96002 -15.57820 -14.96079 -14.60864 -14.52593 -14.42225 -14.20036 -13.76268 -13.18763 -13.00044 -12.75123 -12.64191 -12.32632 -12.02511 -11.89701 -11.58522 -11.17706 -10.93997 -10.93239 -10.89621 -10.74663 -10.65496 -10.49842 -10.09834 -10.05538 -9.90588 -9.68904 -8.89301 -8.52293 -8.01928 -7.46958 -5.96619 -4.14601 3.28470 3.36681 3.39918 4.35338 4.52617 4.92952 5.01705 5.10883 5.26159 5.30933 5.35241 5.41863 5.56360 5.67010 5.69716 5.84468 5.88041 5.88800 5.99816 6.02174 6.12613 6.14357 6.16782 6.24490 6.28117 6.29387 6.33487 6.45901 6.56048 6.61881 6.68956 6.80490 6.90849 7.68035 7.77514 7.85213 7.96848 8.26184 8.89914 9.51481 9.68473 11.07494 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030380 B = 0.006187 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.424866 B = 4524.768125 C = 5021.232033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.083 4.083 4 H 0.078 0.922 5 C -0.114 4.114 6 C -0.109 4.109 7 C 0.078 3.922 8 H 0.074 0.926 9 C -0.187 4.187 10 N -0.519 5.519 11 C 0.032 3.968 12 C 0.237 3.763 13 H 0.053 0.947 14 O -0.554 6.554 15 C -0.573 4.573 16 H 0.054 0.946 17 C 0.080 3.920 18 N -0.859 5.859 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.059 3.941 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.026 0.974 37 H 0.060 0.940 38 H 0.342 0.658 39 H 0.259 0.741 40 H 0.082 0.918 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.894 0.171 -11.068 14.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.102 4.102 4 H 0.096 0.904 5 C -0.152 4.152 6 C -0.147 4.147 7 C -0.031 4.031 8 H 0.092 0.908 9 C -0.246 4.246 10 N -0.242 5.242 11 C -0.096 4.096 12 C 0.179 3.821 13 H 0.071 0.929 14 O -0.355 6.355 15 C -0.611 4.611 16 H 0.072 0.928 17 C -0.126 4.126 18 N -0.494 5.494 19 Si 0.715 3.285 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.069 4.069 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.184 0.816 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -10.439 -0.215 -10.331 14.689 hybrid contribution 1.900 0.032 -0.694 2.023 sum -8.539 -0.183 -11.025 13.946 Atomic orbital electron populations 1.21789 0.96160 1.01040 1.01732 1.21530 0.95566 0.96780 1.01884 1.21190 0.95707 0.95182 0.98076 0.90384 1.21679 0.99783 0.96081 0.97610 1.21563 0.95072 0.96985 1.01057 1.21679 0.95084 0.97997 0.88343 0.90756 1.22510 1.01409 1.01498 0.99205 1.62096 1.15812 1.16023 1.30282 1.23050 0.85061 1.00314 1.01166 1.19324 0.90646 0.90663 0.81495 0.92901 1.86555 1.67020 1.19690 1.62243 1.21713 0.92968 1.47568 0.98890 0.92788 1.25020 0.97413 0.94040 0.96156 1.70094 1.33910 1.41675 1.03767 0.86647 0.85903 0.77716 0.78277 1.19784 1.20873 1.20941 1.22122 0.93791 0.89812 1.01149 0.93245 0.92723 0.92827 0.92513 0.91740 0.92340 0.92484 0.92432 0.91312 0.92973 0.92609 0.92170 0.95584 0.92115 0.81550 0.93110 0.90013 0.95570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.67 37.16 0.36 -1.24 16 2 C -0.12 -1.50 5.41 -26.73 -0.14 -1.65 16 3 C -0.08 -1.19 2.35 -90.54 -0.21 -1.40 16 4 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 5 C -0.11 -1.42 4.67 -26.61 -0.12 -1.55 16 6 C -0.11 -1.42 5.61 -26.65 -0.15 -1.57 16 7 C 0.08 1.18 2.93 -67.72 -0.20 0.98 16 8 H 0.07 1.13 8.01 -51.93 -0.42 0.71 16 9 C -0.19 -2.60 8.18 37.16 0.30 -2.30 16 10 N -0.52 -9.52 4.47 -226.69 -1.01 -10.54 16 11 C 0.03 0.66 4.01 -3.82 -0.02 0.65 16 12 C 0.24 6.06 2.70 -27.88 -0.08 5.99 16 13 H 0.05 1.49 6.44 -51.93 -0.33 1.16 16 14 O -0.55 -14.65 12.60 -35.23 -0.44 -15.10 16 15 C -0.57 -15.88 8.76 -34.44 -0.30 -16.19 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 18 N -0.86 -25.66 12.84 55.43 0.71 -24.95 16 19 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.06 1.03 4.28 -3.84 -0.02 1.02 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.53 6.62 -51.93 -0.34 0.19 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.65 6.69 -51.93 -0.35 0.30 16 30 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.84 6.77 -51.93 -0.35 0.48 16 35 H 0.06 0.84 4.80 -51.93 -0.25 0.59 16 36 H 0.03 0.55 6.96 -51.93 -0.36 0.19 16 37 H 0.06 1.25 7.98 -51.93 -0.41 0.84 16 38 H 0.34 8.18 9.04 45.56 0.41 8.59 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.08 1.66 6.22 -51.93 -0.32 1.34 16 41 H 0.03 0.45 6.19 -51.93 -0.32 0.12 16 LS Contribution 308.23 15.07 4.64 4.64 Total: -1.00 -29.79 308.23 -8.11 -37.90 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.32 Total: 6.84 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -0.67 Total: -15.10 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.30 Total: -35.48 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.44 Total: -15.10 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.79 -8.11 -37.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930660151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.794 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds