Wall clock time and date at job start Mon Mar 30 2020 05:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47486 * 2 1 4 4 C 1.52997 * 109.47269 * 239.99665 * 2 1 3 5 5 C 1.53002 * 109.47415 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.46972 * 59.99860 * 5 4 2 7 7 C 1.52997 * 109.47165 * 300.00293 * 6 5 4 8 8 C 1.52999 * 109.47592 * 60.00300 * 7 6 5 9 9 C 1.52997 * 109.46991 * 59.99657 * 8 7 6 10 10 N 1.46899 * 109.47571 * 180.02562 * 8 7 6 11 11 C 1.46896 * 110.99916 * 299.99996 * 10 8 7 12 12 C 1.52999 * 109.47362 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.46697 * 59.99629 * 12 11 10 14 14 O 1.42896 * 109.46925 * 299.99838 * 12 11 10 15 15 C 1.50699 * 109.47283 * 179.97438 * 12 11 10 16 16 H 1.08000 * 120.00167 * 0.02562 * 15 12 11 17 17 C 1.37873 * 120.00028 * 179.97438 * 15 12 11 18 18 N 1.31519 * 120.00217 * 180.02562 * 17 15 12 19 19 Si 1.86808 * 119.99897 * 0.02562 * 17 15 12 20 20 H 1.48495 * 109.47170 * 89.99598 * 19 17 15 21 21 H 1.48502 * 109.46746 * 209.99717 * 19 17 15 22 22 H 1.48501 * 109.47026 * 329.99393 * 19 17 15 23 23 H 1.09001 * 109.47362 * 300.00723 * 1 2 3 24 24 H 1.09002 * 109.46716 * 60.00082 * 1 2 3 25 25 H 1.09000 * 109.47486 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47140 * 300.00547 * 4 2 1 27 27 H 1.09001 * 109.47230 * 59.99691 * 4 2 1 28 28 H 1.08992 * 109.46974 * 180.02562 * 5 4 2 29 29 H 1.08996 * 109.46550 * 300.00288 * 5 4 2 30 30 H 1.09000 * 109.47054 * 60.00300 * 6 5 4 31 31 H 1.09001 * 109.46997 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47140 * 299.99954 * 7 6 5 33 33 H 1.09002 * 109.47045 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.47261 * 300.00382 * 9 8 7 35 35 H 1.09002 * 109.47153 * 60.00555 * 9 8 7 36 36 H 1.09001 * 109.47289 * 180.02562 * 9 8 7 37 37 H 1.00897 * 110.99811 * 176.04417 * 10 8 7 38 38 H 1.09004 * 109.47035 * 299.99943 * 11 10 8 39 39 H 1.09003 * 109.47511 * 59.99467 * 11 10 8 40 40 H 0.96693 * 114.00237 * 299.99917 * 14 12 11 41 41 H 0.96997 * 120.00040 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7221 1.2496 8 6 2.0395 -0.7216 1.2494 9 6 1.5290 -2.1639 1.2491 10 7 1.5498 -0.0285 2.4484 11 6 2.0203 -0.6943 3.6704 12 6 1.4918 0.0549 4.8952 13 1 0.4019 0.0554 4.8784 14 8 1.9693 1.4015 4.8726 15 6 1.9741 -0.6286 6.1488 16 1 2.5957 -1.5089 6.0789 17 6 1.6225 -0.1293 7.3849 18 7 2.0438 -0.7254 8.4790 19 14 0.5478 1.3939 7.5059 20 1 -0.8809 0.9904 7.5385 21 1 0.8808 2.1372 8.7476 22 1 0.7894 2.2650 6.3277 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6766 -1.7489 -1.2492 27 1 1.6767 -0.2076 -2.1392 28 1 3.9333 -1.2353 -2.1390 29 1 3.9336 0.3056 -1.2487 30 1 3.7158 -2.4709 0.0002 31 1 5.1695 -1.4434 0.0008 32 1 3.9331 0.3054 1.2497 33 1 3.9328 -1.2359 2.1396 34 1 1.8924 -2.6778 0.3591 35 1 1.8920 -2.6779 2.1391 36 1 0.4390 -2.1635 1.2485 37 1 0.5433 0.0419 2.4396 38 1 1.6565 -1.7217 3.6874 39 1 3.1102 -0.6945 3.6874 40 1 2.9331 1.4773 4.8857 41 1 1.7961 -0.3744 9.3486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930691702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:50 Heat of formation + Delta-G solvation = -68.897140 kcal Electronic energy + Delta-G solvation = -18701.536807 eV Core-core repulsion = 16001.442377 eV Total energy + Delta-G solvation = -2700.094430 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.93667 -36.39981 -34.20611 -32.58455 -32.18381 -30.04601 -27.71554 -27.50042 -25.66247 -24.32361 -21.70091 -21.06689 -20.17891 -18.07299 -17.12174 -16.03313 -15.12373 -14.85516 -14.63474 -14.45894 -14.10201 -14.00206 -13.62416 -12.93240 -12.79471 -12.61698 -12.30796 -12.13074 -11.92628 -11.87273 -11.48526 -11.34855 -11.07082 -10.93918 -10.86982 -10.63562 -10.43130 -10.16247 -10.06512 -9.82205 -9.67623 -8.97402 -8.58019 -8.16568 -7.74557 -6.09506 -4.20333 3.42136 3.51653 3.80117 4.48148 4.57852 4.71105 4.78036 5.01435 5.15186 5.24808 5.27412 5.36310 5.38424 5.52707 5.55807 5.68052 5.69097 5.83519 5.85700 5.90880 5.97977 6.02025 6.05216 6.10261 6.18626 6.23144 6.28428 6.33894 6.36864 6.39232 6.50842 6.68341 6.79402 7.39374 7.50638 7.75278 7.95630 8.33860 8.87786 9.16895 9.56151 11.01244 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.039128 B = 0.005948 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.426349 B = 4706.643112 C = 4977.129532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.076 4.076 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.106 4.106 8 C 0.119 3.881 9 C -0.187 4.187 10 N -0.673 5.673 11 C 0.040 3.960 12 C 0.199 3.801 13 H 0.048 0.952 14 O -0.571 6.571 15 C -0.564 4.564 16 H 0.070 0.930 17 C 0.083 3.917 18 N -0.895 5.895 19 Si 0.872 3.128 20 H -0.289 1.289 21 H -0.297 1.297 22 H -0.215 1.215 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.334 0.666 38 H 0.029 0.971 39 H 0.068 0.932 40 H 0.354 0.646 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.380 -0.341 -19.051 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.095 4.095 3 H 0.094 0.906 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.144 4.144 8 C 0.028 3.972 9 C -0.246 4.246 10 N -0.304 5.304 11 C -0.089 4.089 12 C 0.141 3.859 13 H 0.065 0.935 14 O -0.376 6.376 15 C -0.601 4.601 16 H 0.088 0.912 17 C -0.121 4.121 18 N -0.533 5.533 19 Si 0.698 3.302 20 H -0.216 1.216 21 H -0.224 1.224 22 H -0.137 1.137 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.153 0.847 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.200 0.800 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.242 0.265 -18.877 18.880 hybrid contribution -0.540 -0.506 0.415 0.848 sum -0.298 -0.241 -18.462 18.466 Atomic orbital electron populations 1.21925 0.95763 1.01547 1.01757 1.21081 0.95136 0.99846 0.93445 0.90619 1.21643 0.95509 1.00717 0.97386 1.21522 0.95748 1.00732 0.97556 1.21594 0.99908 0.99542 0.94782 1.21574 0.94293 1.01154 0.97354 1.20819 0.94709 0.90987 0.90693 1.22708 1.01058 0.98675 1.02141 1.60698 1.15793 1.53037 1.00877 1.22709 1.00419 0.95910 0.89837 1.19696 0.94543 0.80341 0.91340 0.93455 1.86644 1.24967 1.29195 1.96818 1.21520 1.34467 1.14323 0.89829 0.91186 1.24995 0.94845 0.96944 0.95357 1.69965 1.44824 1.40569 0.97911 0.87018 0.79465 0.84707 0.78985 1.21601 1.22354 1.13735 0.92011 0.93060 0.92798 0.91936 0.92347 0.92543 0.92054 0.91999 0.92273 0.91357 0.91677 0.92163 0.92222 0.92784 0.84676 0.95260 0.91354 0.80019 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.51 37.16 0.32 -1.39 16 2 C -0.08 -0.90 2.21 -90.62 -0.20 -1.10 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -1.15 4.93 -26.73 -0.13 -1.29 16 5 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 6 C -0.12 -1.32 5.65 -26.73 -0.15 -1.47 16 7 C -0.11 -1.42 4.49 -26.73 -0.12 -1.54 16 8 C 0.12 1.62 0.47 -131.60 -0.06 1.56 16 9 C -0.19 -2.45 7.18 37.16 0.27 -2.19 16 10 N -0.67 -11.16 5.93 -99.96 -0.59 -11.75 16 11 C 0.04 0.78 4.50 -3.83 -0.02 0.76 16 12 C 0.20 4.66 2.52 -27.88 -0.07 4.59 16 13 H 0.05 1.15 7.57 -51.93 -0.39 0.76 16 14 O -0.57 -13.23 10.01 -35.23 -0.35 -13.58 16 15 C -0.56 -15.74 9.34 -34.44 -0.32 -16.07 16 16 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 17 C 0.08 2.40 5.47 -17.82 -0.10 2.31 16 18 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 19 Si 0.87 22.14 26.99 -169.99 -4.59 17.56 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 22 H -0.22 -5.37 5.30 56.52 0.30 -5.07 16 23 H 0.06 0.75 6.57 -51.93 -0.34 0.41 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.58 6.43 -51.93 -0.33 0.25 16 26 H 0.06 0.63 6.43 -51.93 -0.33 0.29 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.96 6.41 -51.93 -0.33 0.63 16 34 H 0.06 0.70 4.81 -51.93 -0.25 0.45 16 35 H 0.06 0.87 6.41 -51.93 -0.33 0.54 16 36 H 0.05 0.69 6.43 -51.93 -0.33 0.36 16 37 H 0.33 5.50 6.76 -39.29 -0.27 5.24 16 38 H 0.03 0.58 6.31 -51.93 -0.33 0.25 16 39 H 0.07 1.35 6.30 -51.93 -0.33 1.03 16 40 H 0.35 7.47 9.04 45.56 0.41 7.88 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 296.78 15.07 4.47 4.47 Total: -1.00 -30.15 296.78 -7.14 -37.29 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.11 Total: 9.98 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -0.75 Total: -17.14 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.18 Total: -38.58 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.35 Total: -13.58 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.59 Total: 17.56 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.15 -7.14 -37.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930691702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.603 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds