Wall clock time and date at job start Mon Mar 30 2020 05:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47486 * 2 1 4 4 C 1.52997 * 109.47269 * 239.99665 * 2 1 3 5 5 C 1.53002 * 109.47415 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.46972 * 59.99860 * 5 4 2 7 7 C 1.52997 * 109.47165 * 300.00293 * 6 5 4 8 8 C 1.52999 * 109.47592 * 60.00300 * 7 6 5 9 9 C 1.52997 * 109.46991 * 59.99657 * 8 7 6 10 10 N 1.46899 * 109.47571 * 180.02562 * 8 7 6 11 11 C 1.46896 * 110.99916 * 299.99996 * 10 8 7 12 12 C 1.52999 * 109.47362 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.46697 * 59.99629 * 12 11 10 14 14 O 1.42896 * 109.46925 * 299.99838 * 12 11 10 15 15 C 1.50699 * 109.47283 * 179.97438 * 12 11 10 16 16 H 1.08000 * 120.00167 * 0.02562 * 15 12 11 17 17 C 1.37873 * 120.00028 * 179.97438 * 15 12 11 18 18 N 1.31519 * 120.00217 * 180.02562 * 17 15 12 19 19 Si 1.86808 * 119.99897 * 0.02562 * 17 15 12 20 20 H 1.48495 * 109.47170 * 89.99598 * 19 17 15 21 21 H 1.48502 * 109.46746 * 209.99717 * 19 17 15 22 22 H 1.48501 * 109.47026 * 329.99393 * 19 17 15 23 23 H 1.09001 * 109.47362 * 300.00723 * 1 2 3 24 24 H 1.09002 * 109.46716 * 60.00082 * 1 2 3 25 25 H 1.09000 * 109.47486 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47140 * 300.00547 * 4 2 1 27 27 H 1.09001 * 109.47230 * 59.99691 * 4 2 1 28 28 H 1.08992 * 109.46974 * 180.02562 * 5 4 2 29 29 H 1.08996 * 109.46550 * 300.00288 * 5 4 2 30 30 H 1.09000 * 109.47054 * 60.00300 * 6 5 4 31 31 H 1.09001 * 109.46997 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47140 * 299.99954 * 7 6 5 33 33 H 1.09002 * 109.47045 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.47261 * 300.00382 * 9 8 7 35 35 H 1.09002 * 109.47153 * 60.00555 * 9 8 7 36 36 H 1.09001 * 109.47289 * 180.02562 * 9 8 7 37 37 H 1.00897 * 110.99811 * 176.04417 * 10 8 7 38 38 H 1.09004 * 109.47035 * 299.99943 * 11 10 8 39 39 H 1.09003 * 109.47511 * 59.99467 * 11 10 8 40 40 H 0.96693 * 114.00237 * 299.99917 * 14 12 11 41 41 H 0.96997 * 120.00040 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7221 1.2496 8 6 2.0395 -0.7216 1.2494 9 6 1.5290 -2.1639 1.2491 10 7 1.5498 -0.0285 2.4484 11 6 2.0203 -0.6943 3.6704 12 6 1.4918 0.0549 4.8952 13 1 0.4019 0.0554 4.8784 14 8 1.9693 1.4015 4.8726 15 6 1.9741 -0.6286 6.1488 16 1 2.5957 -1.5089 6.0789 17 6 1.6225 -0.1293 7.3849 18 7 2.0438 -0.7254 8.4790 19 14 0.5478 1.3939 7.5059 20 1 -0.8809 0.9904 7.5385 21 1 0.8808 2.1372 8.7476 22 1 0.7894 2.2650 6.3277 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6766 -1.7489 -1.2492 27 1 1.6767 -0.2076 -2.1392 28 1 3.9333 -1.2353 -2.1390 29 1 3.9336 0.3056 -1.2487 30 1 3.7158 -2.4709 0.0002 31 1 5.1695 -1.4434 0.0008 32 1 3.9331 0.3054 1.2497 33 1 3.9328 -1.2359 2.1396 34 1 1.8924 -2.6778 0.3591 35 1 1.8920 -2.6779 2.1391 36 1 0.4390 -2.1635 1.2485 37 1 0.5433 0.0419 2.4396 38 1 1.6565 -1.7217 3.6874 39 1 3.1102 -0.6945 3.6874 40 1 2.9331 1.4773 4.8857 41 1 1.7961 -0.3744 9.3486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930691702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:49 Heat of formation + Delta-G solvation = -90.500449 kcal Electronic energy + Delta-G solvation = -18702.473597 eV Core-core repulsion = 16001.442377 eV Total energy + Delta-G solvation = -2701.031220 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.00119 -38.14987 -35.50152 -34.39878 -33.54859 -31.40584 -29.43612 -28.48709 -26.71804 -25.97784 -23.06938 -21.98362 -21.72147 -19.40375 -18.93380 -17.31352 -16.87048 -16.22021 -16.15220 -15.85417 -15.40671 -15.05869 -15.04339 -14.79151 -13.99827 -13.82711 -13.55577 -13.39463 -13.19114 -12.96412 -12.86544 -12.79403 -12.58291 -12.43636 -12.15311 -11.94727 -11.70655 -11.54420 -11.12029 -11.07399 -11.01799 -10.80142 -10.69046 -10.06731 -9.13211 -8.35574 -6.50105 1.39648 1.45243 1.76586 2.44522 3.02945 3.26375 3.74313 3.84117 4.04294 4.12872 4.24433 4.29276 4.37434 4.39660 4.44695 4.59240 4.61063 4.64986 4.73127 4.82940 4.87766 4.99769 5.00738 5.06278 5.14641 5.18760 5.23968 5.30006 5.36368 5.41037 5.43760 5.51085 5.51723 5.57451 5.70687 6.09346 6.28623 6.57444 6.66742 7.22788 7.38096 8.78781 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.039128 B = 0.005948 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.426349 B = 4706.643112 C = 4977.129532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.072 4.072 3 H 0.064 0.936 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.106 4.106 8 C 0.117 3.883 9 C -0.182 4.182 10 N -0.675 5.675 11 C 0.059 3.941 12 C 0.206 3.794 13 H 0.046 0.954 14 O -0.572 6.572 15 C -0.566 4.566 16 H 0.034 0.966 17 C 0.028 3.972 18 N -0.941 5.941 19 Si 0.941 3.059 20 H -0.285 1.285 21 H -0.298 1.298 22 H -0.205 1.205 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.057 0.943 37 H 0.336 0.664 38 H 0.022 0.978 39 H 0.061 0.939 40 H 0.364 0.636 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 0.443 -21.520 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.091 4.091 3 H 0.083 0.917 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.144 4.144 8 C 0.026 3.974 9 C -0.240 4.240 10 N -0.306 5.306 11 C -0.071 4.071 12 C 0.147 3.853 13 H 0.063 0.937 14 O -0.378 6.378 15 C -0.604 4.604 16 H 0.052 0.948 17 C -0.172 4.172 18 N -0.580 5.580 19 Si 0.765 3.235 20 H -0.212 1.212 21 H -0.225 1.225 22 H -0.127 1.127 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.156 0.844 38 H 0.040 0.960 39 H 0.080 0.920 40 H 0.211 0.789 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.468 1.046 -21.371 21.402 hybrid contribution -0.250 -0.800 1.161 1.432 sum -0.718 0.245 -20.211 20.225 Atomic orbital electron populations 1.21911 0.95097 1.01913 1.01916 1.21043 0.95669 0.99156 0.93218 0.91718 1.21631 0.95566 1.00866 0.96791 1.21519 0.95614 1.00702 0.97475 1.21571 1.00379 0.99429 0.94049 1.21561 0.94242 1.00612 0.97960 1.20954 0.94808 0.91409 0.90206 1.22648 1.01259 0.98093 1.02045 1.60645 1.15990 1.53205 1.00739 1.22302 0.99772 0.95073 0.89907 1.19514 0.94304 0.80472 0.90985 0.93663 1.86577 1.25971 1.28508 1.96777 1.21848 1.33323 1.13282 0.91907 0.94794 1.25866 0.96257 0.99997 0.95040 1.70089 1.46799 1.42545 0.98617 0.85955 0.77571 0.80992 0.78970 1.21185 1.22458 1.12722 0.93297 0.91486 0.92311 0.91435 0.90745 0.90642 0.92225 0.91677 0.91588 0.92376 0.93828 0.90234 0.94306 0.92386 0.84426 0.95994 0.92020 0.78897 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.51 71.98 0.61 -2.39 16 2 C -0.07 -1.54 2.21 -10.79 -0.02 -1.57 16 3 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.11 -1.86 4.93 30.59 0.15 -1.71 16 5 C -0.12 -1.93 5.92 30.59 0.18 -1.75 16 6 C -0.12 -2.32 5.65 30.59 0.17 -2.14 16 7 C -0.11 -2.76 4.49 30.59 0.14 -2.62 16 8 C 0.12 3.04 0.47 3.53 0.00 3.04 16 9 C -0.18 -4.52 7.18 71.98 0.52 -4.00 16 10 N -0.67 -21.82 5.93 -470.18 -2.79 -24.61 16 11 C 0.06 2.30 4.50 86.30 0.39 2.69 16 12 C 0.21 9.57 2.52 29.85 0.08 9.65 16 13 H 0.05 2.16 7.57 -2.39 -0.02 2.14 16 14 O -0.57 -25.76 10.01 -148.98 -1.49 -27.25 16 15 C -0.57 -32.20 9.34 25.60 0.24 -31.96 16 16 H 0.03 2.13 7.99 -2.91 -0.02 2.10 16 17 C 0.03 1.63 5.47 84.65 0.46 2.10 16 18 N -0.94 -59.21 13.96 21.45 0.30 -58.91 16 19 Si 0.94 45.94 26.99 68.60 1.85 47.80 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 22 H -0.21 -9.63 5.30 99.48 0.53 -9.10 16 23 H 0.05 1.09 6.57 -2.39 -0.02 1.08 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.11 6.43 -2.39 -0.02 1.09 16 26 H 0.07 1.10 6.43 -2.39 -0.02 1.08 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.26 6.43 -2.39 -0.02 1.24 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.04 1.30 6.41 -2.39 -0.02 1.29 16 34 H 0.08 1.66 4.81 -2.38 -0.01 1.65 16 35 H 0.04 1.12 6.41 -2.39 -0.02 1.10 16 36 H 0.06 1.39 6.43 -2.39 -0.02 1.37 16 37 H 0.34 10.68 6.76 -89.70 -0.61 10.08 16 38 H 0.02 0.89 6.31 -2.38 -0.02 0.87 16 39 H 0.06 2.49 6.30 -2.39 -0.02 2.47 16 40 H 0.36 14.99 9.04 -74.06 -0.67 14.32 16 41 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -64.51 296.78 0.36 -64.15 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -0.43 Total: 29.49 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 2.92 Total: -30.66 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -2.49 Total: -83.53 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -1.49 Total: -27.25 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.85 Total: 47.80 kcal Total: -64.51 0.36 -64.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930691702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.347 kcal (2) G-P(sol) polarization free energy of solvation -64.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds