Wall clock time and date at job start Mon Mar 30 2020 04:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46953 * 2 1 4 4 C 1.50702 * 109.46935 * 239.99723 * 2 1 3 5 5 H 1.07994 * 120.00222 * 269.05987 * 4 2 1 6 6 C 1.37877 * 119.99826 * 89.05612 * 4 2 1 7 7 N 1.31524 * 119.99885 * 353.33094 * 6 4 2 8 8 Si 1.86797 * 120.00251 * 173.33587 * 6 4 2 9 9 H 1.48507 * 109.46745 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47313 * 240.00295 * 8 6 4 11 11 H 1.48494 * 109.47420 * 119.99703 * 8 6 4 12 12 N 1.46900 * 109.47292 * 120.00082 * 2 1 3 13 13 C 1.46900 * 111.00180 * 176.04731 * 12 2 1 14 14 C 1.46900 * 110.99670 * 299.99750 * 12 2 1 15 15 H 1.09001 * 108.85484 * 55.00618 * 14 12 2 16 16 C 1.54059 * 108.88037 * 296.44040 * 14 12 2 17 17 C 1.54008 * 112.85879 * 197.41054 * 16 14 12 18 18 C 1.50477 * 112.54575 * 318.44154 * 17 16 14 19 19 C 1.54238 * 108.52697 * 94.06523 * 18 17 16 20 20 C 1.45543 * 112.40472 * 280.02465 * 19 18 17 21 21 C 1.50479 * 108.87777 * 173.56020 * 14 12 2 22 22 H 1.09002 * 109.63017 * 95.22389 * 21 14 12 23 23 O 1.42907 * 109.62684 * 334.64234 * 21 14 12 24 24 H 1.08993 * 109.47269 * 66.35286 * 1 2 3 25 25 H 1.09004 * 109.47222 * 186.35823 * 1 2 3 26 26 H 1.09006 * 109.46825 * 306.35095 * 1 2 3 27 27 H 0.96997 * 119.99824 * 354.74494 * 7 6 4 28 28 H 1.08998 * 109.46783 * 59.99616 * 13 12 2 29 29 H 1.08994 * 109.47283 * 179.97438 * 13 12 2 30 30 H 1.09003 * 109.46599 * 299.99852 * 13 12 2 31 31 H 1.09003 * 108.81586 * 318.36761 * 16 14 12 32 32 H 1.08998 * 108.81637 * 76.64884 * 16 14 12 33 33 H 1.08994 * 108.91162 * 197.61099 * 17 16 14 34 34 H 1.08997 * 108.70911 * 79.13881 * 17 16 14 35 35 H 1.09002 * 109.62662 * 334.35357 * 18 17 16 36 36 H 1.08994 * 109.78598 * 213.87303 * 18 17 16 37 37 H 1.09001 * 108.89635 * 159.26393 * 19 18 17 38 38 H 1.09006 * 108.89841 * 40.78025 * 19 18 17 39 39 H 1.09004 * 108.89150 * 301.17903 * 20 19 18 40 40 H 1.09003 * 108.89111 * 182.69585 * 20 19 18 41 41 H 0.96698 * 113.99615 * 180.02562 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.2268 -1.7723 -1.1993 6 6 2.2436 -0.0048 -2.3960 7 7 1.8842 1.2579 -2.4745 8 14 3.0399 -0.8422 -3.8636 9 1 3.3484 -2.2538 -3.5207 10 1 4.2961 -0.1332 -4.2166 11 1 2.1089 -0.8054 -5.0199 12 7 2.0198 -0.6925 1.1994 13 6 3.4852 -0.7945 1.1870 14 6 1.5488 -0.0263 2.4210 15 1 0.4618 0.0472 2.3854 16 6 2.1430 1.3940 2.4751 17 6 2.0732 2.0186 3.8810 18 6 0.7640 1.7439 4.5701 19 6 0.9266 0.4860 5.4477 20 6 0.8316 -0.7446 4.6764 21 6 1.9416 -0.8584 3.6117 22 1 2.8817 -0.4897 4.0220 23 8 2.0888 -2.2236 3.2157 24 1 -0.3633 0.4122 -0.9413 25 1 -0.3634 -1.0214 0.1138 26 1 -0.3633 0.6092 0.8277 27 1 1.4025 1.6715 -1.7412 28 1 3.9187 0.2052 1.1591 29 1 3.8210 -1.3108 2.0862 30 1 3.8030 -1.3532 0.3066 31 1 3.1856 1.3512 2.1597 32 1 1.5943 2.0313 1.7817 33 1 2.2073 3.0969 3.7956 34 1 2.8827 1.6098 4.4858 35 1 -0.0130 1.5726 3.8251 36 1 0.4907 2.5938 5.1954 37 1 0.1486 0.4852 6.2111 38 1 1.8995 0.5210 5.9381 39 1 -0.1384 -0.7760 4.1800 40 1 0.9058 -1.5936 5.3560 41 1 2.3414 -2.8170 3.9363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251549330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:07 Heat of formation + Delta-G solvation = -75.797861 kcal Electronic energy + Delta-G solvation = -19266.573829 eV Core-core repulsion = 16566.180161 eV Total energy + Delta-G solvation = -2700.393668 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.03693 -37.95540 -36.69940 -34.96449 -32.67854 -31.48348 -30.54857 -27.10466 -26.17721 -25.57302 -24.26093 -22.17934 -21.54779 -19.69015 -18.64284 -18.25281 -17.16779 -16.45732 -15.66835 -15.60806 -15.57262 -15.16284 -15.00881 -14.66880 -14.20291 -13.91913 -13.66261 -13.31096 -13.17746 -12.99985 -12.73027 -12.52344 -12.37837 -12.20176 -12.15794 -11.94788 -11.92760 -11.54831 -11.53894 -11.29868 -11.01504 -10.68805 -10.53226 -10.34484 -8.81385 -8.55969 -6.28977 1.51286 1.59693 1.77653 2.56041 3.10017 3.27170 3.49156 3.69220 3.87795 4.04716 4.08110 4.17231 4.22064 4.33618 4.45926 4.52588 4.58281 4.60421 4.72427 4.76353 4.83953 4.90756 4.99048 5.03286 5.11142 5.12671 5.19583 5.24847 5.27460 5.30551 5.32890 5.41407 5.49061 5.56415 6.01103 6.09131 6.52854 6.59391 6.82850 7.17432 7.50427 8.77789 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035602 B = 0.007085 C = 0.006593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.276789 B = 3951.125967 C = 4245.888534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.192 3.808 3 H -0.023 1.023 4 C -0.584 4.584 5 H 0.041 0.959 6 C -0.031 4.031 7 N -0.940 5.940 8 Si 1.116 2.884 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.280 1.280 12 N -0.517 5.517 13 C 0.055 3.945 14 C 0.087 3.913 15 H 0.065 0.935 16 C -0.147 4.147 17 C -0.107 4.107 18 C -0.121 4.121 19 C -0.112 4.112 20 C -0.140 4.140 21 C 0.124 3.876 22 H 0.057 0.943 23 O -0.559 6.559 24 H 0.026 0.974 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.256 0.744 28 H -0.002 1.002 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.084 0.916 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 -1.622 17.487 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.085 3.915 3 H -0.005 1.005 4 C -0.623 4.623 5 H 0.060 0.940 6 C -0.229 4.229 7 N -0.578 5.578 8 Si 0.938 3.062 9 H -0.200 1.200 10 H -0.205 1.205 11 H -0.206 1.206 12 N -0.240 5.240 13 C -0.093 4.093 14 C -0.022 4.022 15 H 0.083 0.917 16 C -0.186 4.186 17 C -0.145 4.145 18 C -0.158 4.158 19 C -0.149 4.149 20 C -0.178 4.178 21 C 0.064 3.936 22 H 0.075 0.925 23 O -0.364 6.364 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.016 0.984 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.440 -1.612 15.366 15.457 hybrid contribution -0.288 0.669 1.495 1.663 sum 0.152 -0.943 16.862 16.889 Atomic orbital electron populations 1.21715 0.98029 0.99529 0.98122 1.19318 0.91879 0.91246 0.89046 1.00525 1.22150 1.47100 0.96162 0.96879 0.94031 1.27159 0.96415 0.95674 1.03604 1.70851 1.38664 1.13250 1.34987 0.82952 0.76037 0.74681 0.72510 1.19985 1.20522 1.20631 1.62260 1.09999 1.50777 1.00977 1.22035 0.88317 0.97612 1.01357 1.21680 0.99311 0.90650 0.90548 0.91673 1.22534 1.00464 0.97003 0.98598 1.21265 0.99013 1.00259 0.93953 1.21395 0.96729 0.98884 0.98801 1.20419 1.03301 0.93162 0.98001 1.21125 0.98807 0.99938 0.97951 1.21418 0.97119 0.82442 0.92582 0.92483 1.86840 1.92287 1.17940 1.39348 0.95448 0.93845 0.94497 0.93365 0.98367 0.90551 0.93582 0.93267 0.94805 0.91945 0.90907 0.93320 0.89995 0.90332 0.90859 0.93088 0.89702 0.77216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.63 71.98 0.62 -5.11 16 2 C 0.19 10.19 1.40 44.17 0.06 10.25 16 3 H -0.02 -1.32 5.53 -2.39 -0.01 -1.34 16 4 C -0.58 -34.18 6.99 25.60 0.18 -34.00 16 5 H 0.04 2.51 7.64 -2.91 -0.02 2.49 16 6 C -0.03 -1.81 5.45 84.65 0.46 -1.35 16 7 N -0.94 -58.58 13.56 21.45 0.29 -58.29 16 8 Si 1.12 52.33 29.91 68.60 2.05 54.39 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 N -0.52 -23.56 3.87 -878.89 -3.40 -26.96 16 13 C 0.06 2.40 8.34 127.69 1.06 3.47 16 14 C 0.09 3.17 1.41 44.46 0.06 3.23 16 15 H 0.07 2.52 4.63 -2.39 -0.01 2.51 16 16 C -0.15 -5.09 4.35 31.29 0.14 -4.95 16 17 C -0.11 -2.64 5.31 30.12 0.16 -2.48 16 18 C -0.12 -2.56 5.61 30.20 0.17 -2.39 16 19 C -0.11 -1.97 5.26 28.74 0.15 -1.82 16 20 C -0.14 -3.01 4.93 28.73 0.14 -2.87 16 21 C 0.12 3.47 2.07 30.20 0.06 3.53 16 22 H 0.06 1.48 6.93 -2.39 -0.02 1.46 16 23 O -0.56 -16.95 11.05 -148.98 -1.65 -18.59 16 24 H 0.03 1.42 7.86 -2.39 -0.02 1.40 16 25 H 0.04 2.11 8.14 -2.38 -0.02 2.10 16 26 H 0.04 1.61 6.64 -2.38 -0.02 1.59 16 27 H 0.26 16.20 6.51 -92.71 -0.60 15.60 16 28 H 0.00 -0.09 6.11 -2.39 -0.01 -0.10 16 29 H 0.08 2.85 6.17 -2.39 -0.01 2.84 16 30 H 0.05 2.22 6.86 -2.39 -0.02 2.20 16 31 H 0.05 1.86 5.63 -2.39 -0.01 1.85 16 32 H 0.03 1.34 7.33 -2.39 -0.02 1.32 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.58 6.63 -2.39 -0.02 1.56 16 35 H 0.05 1.22 6.98 -2.39 -0.02 1.21 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.13 7.47 -2.38 -0.02 1.11 16 39 H 0.05 1.28 7.47 -2.39 -0.02 1.26 16 40 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 41 H 0.38 7.34 9.05 -74.06 -0.67 6.67 16 Total: -1.00 -69.34 295.54 1.07 -68.26 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.51 Total: 15.68 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: 3.27 Total: -34.48 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -3.11 Total: -85.25 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -1.65 Total: -18.59 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 2.05 Total: 54.39 kcal Total: -69.34 1.07 -68.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251549330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.536 kcal (2) G-P(sol) polarization free energy of solvation -69.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds