Wall clock time and date at job start Mon Mar 30 2020 04:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99926 * 2 1 4 4 C 1.52997 * 109.47044 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47277 * 305.00487 * 4 3 2 6 6 C 1.53002 * 109.46692 * 65.00607 * 4 3 2 7 7 C 1.53008 * 109.47066 * 184.99978 * 4 3 2 8 8 N 1.46901 * 109.46615 * 60.53938 * 7 4 3 9 9 C 1.46901 * 111.00078 * 72.08565 * 8 7 4 10 10 C 1.46898 * 110.99448 * 196.03482 * 8 7 4 11 11 C 1.52999 * 109.46949 * 163.75002 * 10 8 7 12 12 C 1.50703 * 115.55304 * 298.12891 * 11 10 8 13 13 H 1.08001 * 119.99903 * 95.25652 * 12 11 10 14 14 C 1.37871 * 119.99791 * 275.26923 * 12 11 10 15 15 N 1.31510 * 120.00608 * 7.96823 * 14 12 11 16 16 Si 1.86810 * 119.99669 * 187.97156 * 14 12 11 17 17 H 1.48503 * 109.46797 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47012 * 299.99477 * 16 14 12 19 19 H 1.48505 * 109.47079 * 59.99747 * 16 14 12 20 20 C 1.53004 * 117.49975 * 83.80024 * 11 10 8 21 21 C 1.53007 * 117.50109 * 152.45910 * 11 10 8 22 22 H 1.09004 * 109.46945 * 299.99867 * 1 2 3 23 23 H 1.09004 * 109.47344 * 59.99697 * 1 2 3 24 24 H 1.08995 * 109.47360 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47262 * 60.00084 * 3 2 1 26 26 H 1.08998 * 109.47568 * 300.00459 * 3 2 1 27 27 H 1.09006 * 109.46847 * 184.38448 * 6 4 3 28 28 H 1.08999 * 109.47130 * 304.37808 * 6 4 3 29 29 H 1.08995 * 109.47763 * 64.38381 * 6 4 3 30 30 H 1.08997 * 109.47123 * 300.54074 * 7 4 3 31 31 H 1.08995 * 109.46657 * 180.53481 * 7 4 3 32 32 H 1.08998 * 109.46590 * 190.50697 * 9 8 7 33 33 H 1.09003 * 109.46835 * 310.50379 * 9 8 7 34 34 H 1.08999 * 109.47147 * 70.50467 * 9 8 7 35 35 H 1.08999 * 109.47598 * 43.75291 * 10 8 7 36 36 H 1.08997 * 109.47687 * 283.74807 * 10 8 7 37 37 H 0.97003 * 119.99814 * 355.77779 * 15 14 12 38 38 H 1.09003 * 117.49834 * 215.00124 * 20 11 10 39 39 H 1.08995 * 117.49697 * 0.02690 * 20 11 10 40 40 H 1.09005 * 117.49512 * 359.97438 * 21 11 10 41 41 H 1.08994 * 117.49996 * 144.97189 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8508 0.5684 0.8426 6 6 3.9962 0.5365 -1.3065 7 6 4.1573 2.5770 0.1264 8 7 3.7251 3.1941 1.3875 9 6 4.3779 2.5545 2.5375 10 6 3.9755 4.6416 1.3780 11 6 3.1685 5.3060 2.4952 12 6 1.6716 5.1708 2.3847 13 1 1.1606 4.3785 2.9116 14 6 0.9546 6.0583 1.6107 15 7 1.5853 6.9230 0.8464 16 14 -0.9130 6.0326 1.6476 17 1 -1.4405 7.0780 0.7343 18 1 -1.3985 4.6998 1.2081 19 1 -1.3844 6.3000 3.0302 20 6 3.7757 5.3089 3.8996 21 6 3.7185 6.6052 3.0875 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8465 -0.8899 27 1 5.0743 0.3793 -1.2738 28 1 3.4929 -0.4219 -1.4339 29 1 3.7496 1.1904 -2.1430 30 1 3.8343 3.1961 -0.7106 31 1 5.2439 2.4917 0.1173 32 1 3.9074 2.8971 3.4591 33 1 4.2754 1.4722 2.4578 34 1 5.4351 2.8195 2.5489 35 1 3.6740 5.0563 0.4161 36 1 5.0376 4.8277 1.5370 37 1 2.5534 6.9780 0.8730 38 1 3.0925 5.2129 4.7435 39 1 4.7502 4.8378 4.0275 40 1 4.6556 6.9862 2.6814 41 1 2.9978 7.3621 3.3967 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308836453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:08 Heat of formation + Delta-G solvation = -46.520056 kcal Electronic energy + Delta-G solvation = -18571.784270 eV Core-core repulsion = 15872.660184 eV Total energy + Delta-G solvation = -2699.124087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.92295 -38.89153 -37.29311 -34.40227 -33.77990 -28.64735 -28.30748 -27.83020 -26.83726 -26.01406 -23.41399 -23.03490 -21.14445 -20.84591 -18.42484 -17.49806 -16.93660 -16.49146 -16.23350 -15.95557 -15.62435 -15.59889 -14.87317 -14.62474 -14.18424 -14.11782 -13.67588 -13.49796 -13.02782 -12.81904 -12.72170 -12.56464 -12.49160 -12.39758 -12.17615 -12.01209 -11.95457 -11.85463 -11.46057 -11.14676 -10.55508 -10.38111 -10.35636 -10.14618 -8.98475 -8.42073 -6.09967 1.54220 1.60875 1.79497 2.62534 2.87271 2.96973 3.33541 3.46847 3.93467 4.04150 4.19129 4.22668 4.32227 4.45616 4.47809 4.51625 4.52841 4.56284 4.60643 4.63385 4.71019 4.74896 4.81952 4.83376 4.86683 4.93278 4.98246 5.07377 5.14321 5.15930 5.29049 5.40644 5.46618 5.57596 6.21502 6.26732 6.35775 6.37591 6.44972 6.86408 7.66009 8.98742 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017379 B = 0.009071 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.752520 B = 3086.033455 C = 4111.084590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.076 3.924 4 C -0.073 4.073 5 H 0.077 0.923 6 C -0.135 4.135 7 C 0.063 3.937 8 N -0.535 5.535 9 C 0.032 3.968 10 C 0.114 3.886 11 C 0.010 3.990 12 C -0.545 4.545 13 H 0.034 0.966 14 C -0.022 4.022 15 N -0.938 5.938 16 Si 1.100 2.900 17 H -0.288 1.288 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.173 4.173 21 C -0.188 4.188 22 H 0.034 0.966 23 H 0.042 0.958 24 H 0.107 0.893 25 H 0.045 0.955 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.040 0.960 36 H 0.015 0.985 37 H 0.263 0.737 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.872 -11.648 -1.528 12.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C 0.000 4.000 4 C -0.092 4.092 5 H 0.095 0.905 6 C -0.193 4.193 7 C -0.065 4.065 8 N -0.259 5.259 9 C -0.116 4.116 10 C -0.014 4.014 11 C 0.009 3.991 12 C -0.583 4.583 13 H 0.053 0.947 14 C -0.220 4.220 15 N -0.576 5.576 16 Si 0.925 3.075 17 H -0.214 1.214 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.211 4.211 21 C -0.226 4.226 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.125 0.875 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.126 -11.199 -2.155 11.601 hybrid contribution 1.884 0.198 0.669 2.009 sum 4.011 -11.002 -1.486 11.804 Atomic orbital electron populations 1.22857 0.80300 1.03630 1.00076 1.87735 1.20732 1.28669 1.95536 1.22410 0.94247 0.83456 0.99910 1.21030 0.92712 0.95599 0.99890 0.90474 1.21703 1.01515 1.00676 0.95406 1.22136 0.97530 0.94908 0.91901 1.61641 1.58870 1.02695 1.02646 1.22415 0.95697 0.99371 0.94107 1.21484 0.94146 0.87506 0.98293 1.19149 0.94248 0.95227 0.90484 1.21271 0.90623 1.14374 1.32013 0.94747 1.26749 1.09540 0.93358 0.92401 1.70841 1.11007 1.38762 1.36983 0.83130 0.71340 0.76421 0.76602 1.21385 1.20261 1.20317 1.22877 1.00968 1.01038 0.96172 1.22725 1.00838 0.91897 1.07139 0.94762 0.93965 0.87502 0.93673 0.94786 0.91314 0.91823 0.92925 0.92393 0.93368 0.92216 0.90770 0.95657 0.94182 0.96690 0.92656 0.90833 0.89127 0.90280 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -12.77 10.17 -148.98 -1.51 -14.28 16 3 C 0.08 2.58 5.24 71.98 0.38 2.95 16 4 C -0.07 -2.13 2.61 -10.79 -0.03 -2.16 16 5 H 0.08 2.20 6.58 -2.39 -0.02 2.18 16 6 C -0.14 -3.20 9.14 71.98 0.66 -2.54 16 7 C 0.06 2.03 4.41 86.31 0.38 2.41 16 8 N -0.54 -20.47 3.69 -922.46 -3.40 -23.87 16 9 C 0.03 1.05 8.75 127.69 1.12 2.17 16 10 C 0.11 4.95 4.76 86.30 0.41 5.36 16 11 C 0.01 0.47 0.81 -52.92 -0.04 0.43 16 12 C -0.54 -29.92 8.67 25.60 0.22 -29.69 16 13 H 0.03 1.96 7.83 -2.91 -0.02 1.93 16 14 C -0.02 -1.22 5.38 84.65 0.46 -0.76 16 15 N -0.94 -55.78 13.57 21.44 0.29 -55.49 16 16 Si 1.10 50.88 29.91 68.60 2.05 52.93 16 17 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 C -0.17 -7.26 8.26 30.62 0.25 -7.01 16 21 C -0.19 -8.61 8.81 30.62 0.27 -8.34 16 22 H 0.03 0.93 8.14 -2.38 -0.02 0.92 16 23 H 0.04 1.04 8.14 -2.38 -0.02 1.03 16 24 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.04 1.81 7.47 -2.38 -0.02 1.79 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.06 1.50 7.71 -2.39 -0.02 1.48 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 2.01 7.72 -2.39 -0.02 1.99 16 31 H 0.05 1.37 8.05 -2.39 -0.02 1.35 16 32 H 0.06 2.13 6.24 -2.39 -0.01 2.11 16 33 H 0.07 2.15 6.39 -2.39 -0.02 2.13 16 34 H 0.02 0.75 7.98 -2.39 -0.02 0.73 16 35 H 0.04 1.95 7.31 -2.39 -0.02 1.93 16 36 H 0.02 0.61 7.90 -2.39 -0.02 0.59 16 37 H 0.26 15.60 6.16 -92.71 -0.57 15.03 16 38 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.09 3.30 7.60 -2.39 -0.02 3.28 16 40 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 41 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -61.70 324.72 3.91 -57.79 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 1.16 Total: 18.14 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 5.32 Total: -35.23 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -3.11 Total: -79.36 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -1.51 Total: -14.28 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.05 Total: 52.93 kcal Total: -61.70 3.91 -57.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308836453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.272 kcal (2) G-P(sol) polarization free energy of solvation -61.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds