Wall clock time and date at job start Mon Mar 30 2020 04:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47562 * 2 1 4 4 C 1.50701 * 109.47511 * 239.99760 * 2 1 3 5 5 H 1.07997 * 119.99651 * 275.00422 * 4 2 1 6 6 C 1.37871 * 120.00069 * 95.00105 * 4 2 1 7 7 N 1.31510 * 120.00236 * 184.91793 * 6 4 2 8 8 Si 1.86796 * 119.99986 * 4.91676 * 6 4 2 9 9 H 1.48501 * 109.47328 * 84.83299 * 8 6 4 10 10 H 1.48503 * 109.47389 * 204.82986 * 8 6 4 11 11 H 1.48502 * 109.47483 * 324.82674 * 8 6 4 12 12 N 1.46904 * 109.46831 * 119.99693 * 2 1 3 13 13 C 1.46901 * 111.00276 * 274.99823 * 12 2 1 14 14 C 1.52996 * 109.47612 * 180.02562 * 13 12 2 15 15 C 1.52999 * 109.46845 * 300.00146 * 14 13 12 16 16 C 1.53001 * 109.46902 * 60.00078 * 14 13 12 17 17 C 1.52996 * 109.46896 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47246 * 299.99559 * 17 16 14 19 19 C 1.53001 * 109.46813 * 60.00390 * 18 17 16 20 20 C 1.52998 * 109.47487 * 180.02562 * 14 13 12 21 21 H 1.09000 * 109.46966 * 59.99705 * 20 14 13 22 22 O 1.42908 * 109.46937 * 300.00117 * 20 14 13 23 23 H 1.08994 * 109.47347 * 175.05586 * 1 2 3 24 24 H 1.09003 * 109.47090 * 295.05801 * 1 2 3 25 25 H 1.09003 * 109.46812 * 55.05436 * 1 2 3 26 26 H 0.96997 * 120.00653 * 180.02562 * 7 6 4 27 27 H 1.00907 * 111.00042 * 151.04776 * 12 2 1 28 28 H 1.09000 * 109.47064 * 59.99694 * 13 12 2 29 29 H 1.09004 * 109.47245 * 300.00743 * 13 12 2 30 30 H 1.09000 * 109.47533 * 299.99605 * 15 14 13 31 31 H 1.09003 * 109.46874 * 179.97438 * 15 14 13 32 32 H 1.09003 * 109.47062 * 59.99906 * 15 14 13 33 33 H 1.09003 * 109.47240 * 300.00238 * 16 14 13 34 34 H 1.08994 * 109.47451 * 60.00349 * 16 14 13 35 35 H 1.09000 * 109.47252 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.47798 * 60.00024 * 17 16 14 37 37 H 1.08991 * 109.47460 * 300.00582 * 18 17 16 38 38 H 1.09000 * 109.47476 * 179.97438 * 18 17 16 39 39 H 1.08995 * 109.47399 * 179.97438 * 19 18 17 40 40 H 1.09002 * 109.47307 * 59.99595 * 19 18 17 41 41 H 0.96696 * 113.99892 * 180.02562 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3603 0.0120 -2.3580 7 7 2.7061 -0.6133 -3.4621 8 14 2.3136 1.8789 -2.3174 9 1 3.5991 2.3948 -1.7821 10 1 2.1060 2.3989 -3.6928 11 1 1.1985 2.3274 -1.4452 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2227 2.3470 14 6 2.5961 -0.5327 3.5743 15 6 1.6471 -1.6890 3.8955 16 6 3.9934 -1.0849 3.2853 17 6 4.5068 -1.8408 4.5124 18 6 4.5722 -0.8880 5.7079 19 6 3.1749 -0.3358 5.9968 20 6 2.6609 0.4203 4.7695 21 1 1.6652 0.8133 4.9752 22 8 3.5470 1.5007 4.4697 23 1 -0.3634 -1.0238 -0.0886 24 1 -0.3633 0.4353 0.9310 25 1 -0.3633 0.5887 -0.8424 26 1 2.9372 -0.1051 -4.2553 27 1 2.9173 -1.1205 1.0289 28 1 1.0870 0.6165 2.5525 29 1 2.7587 1.0463 2.1182 30 1 0.6516 -1.2956 4.1014 31 1 2.0133 -2.2274 4.7697 32 1 1.6005 -2.3681 3.0441 33 1 3.9468 -1.7639 2.4339 34 1 4.6695 -0.2612 3.0565 35 1 5.5025 -2.2338 4.3068 36 1 3.8307 -2.6646 4.7410 37 1 5.2483 -0.0643 5.4794 38 1 4.9375 -1.4266 6.5822 39 1 3.2212 0.3425 6.8487 40 1 2.4987 -1.1597 6.2253 41 1 3.6372 2.1453 5.1848 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308896525.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:48 Heat of formation + Delta-G solvation = -74.851679 kcal Electronic energy + Delta-G solvation = -18724.239102 eV Core-core repulsion = 16023.886464 eV Total energy + Delta-G solvation = -2700.352638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.89400 -36.12768 -35.05658 -33.03560 -31.60091 -29.99238 -28.67157 -26.20820 -25.35732 -24.12026 -22.48682 -20.88380 -19.51722 -18.16854 -16.97656 -16.83410 -15.73895 -15.13040 -14.79297 -14.56669 -13.81847 -13.54326 -13.11093 -13.01809 -12.74321 -12.45733 -12.32119 -12.07766 -11.79298 -11.53301 -11.45402 -11.31569 -10.97423 -10.86872 -10.68193 -10.59134 -10.43296 -10.10606 -9.97965 -9.84418 -9.63238 -9.50943 -8.91283 -8.54597 -7.27894 -6.07743 -4.07715 3.29165 3.37156 3.40572 4.29540 4.42171 4.68584 4.77692 4.91468 5.11253 5.25796 5.27600 5.37874 5.49095 5.52920 5.64840 5.68029 5.73953 5.83050 5.96945 6.05251 6.06463 6.17690 6.25190 6.38922 6.43446 6.46961 6.50255 6.59335 6.67414 6.76785 6.80326 6.90571 6.98043 7.48158 7.69255 7.73538 8.06733 8.49893 8.73513 9.01827 9.57387 11.05398 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032898 B = 0.006243 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.911822 B = 4483.831283 C = 4539.543515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.179 3.821 3 H 0.002 0.998 4 C -0.516 4.516 5 H 0.079 0.921 6 C 0.073 3.927 7 N -0.898 5.898 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.266 1.266 12 N -0.682 5.682 13 C 0.070 3.930 14 C -0.046 4.046 15 C -0.133 4.133 16 C -0.108 4.108 17 C -0.119 4.119 18 C -0.113 4.113 19 C -0.152 4.152 20 C 0.114 3.886 21 H 0.050 0.950 22 O -0.558 6.558 23 H 0.050 0.950 24 H 0.019 0.981 25 H 0.038 0.962 26 H 0.264 0.736 27 H 0.339 0.661 28 H 0.057 0.943 29 H 0.027 0.973 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.250 1.516 19.192 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.071 3.929 3 H 0.020 0.980 4 C -0.554 4.554 5 H 0.097 0.903 6 C -0.129 4.129 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.191 1.191 12 N -0.315 5.315 13 C -0.060 4.060 14 C -0.046 4.046 15 C -0.190 4.190 16 C -0.146 4.146 17 C -0.157 4.157 18 C -0.150 4.150 19 C -0.189 4.189 20 C 0.055 3.945 21 H 0.068 0.932 22 O -0.362 6.362 23 H 0.069 0.931 24 H 0.038 0.962 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.733 0.961 18.576 18.615 hybrid contribution 0.666 1.943 0.220 2.066 sum 1.400 2.904 18.796 19.070 Atomic orbital electron populations 1.21824 0.98283 1.00522 0.97542 1.19542 0.92295 0.92517 0.88589 0.98029 1.21091 1.43415 0.95837 0.95104 0.90303 1.25019 0.94450 0.98113 0.95356 1.69900 1.46297 1.35738 1.01647 0.86892 0.79038 0.86729 0.77045 1.20357 1.21492 1.19061 1.60736 1.32977 1.32721 1.05081 1.21887 0.99058 0.94065 0.90947 1.20502 0.96030 0.94489 0.93597 1.21830 0.97708 0.97764 1.01718 1.21532 0.95565 0.99936 0.97543 1.21562 1.00765 0.98088 0.95247 1.21418 0.96593 0.99248 0.97776 1.22278 0.98222 1.00748 0.97677 1.21828 0.91495 0.86968 0.94230 0.93242 1.86599 1.67898 1.37230 1.44496 0.93072 0.96214 0.94284 0.92646 0.84196 0.92465 0.95522 0.93363 0.93293 0.90382 0.91100 0.91595 0.92394 0.91882 0.91639 0.92787 0.92421 0.90819 0.78600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 9.42 37.15 0.35 -2.44 16 2 C 0.18 4.35 2.26 -68.86 -0.16 4.20 16 3 H 0.00 0.05 4.95 -51.93 -0.26 -0.21 16 4 C -0.52 -14.61 8.84 -34.44 -0.30 -14.91 16 5 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 8 Si 0.88 22.10 26.99 -169.99 -4.59 17.52 16 9 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 11 H -0.27 -6.52 6.82 56.52 0.39 -6.13 16 12 N -0.68 -14.27 5.51 -107.95 -0.60 -14.87 16 13 C 0.07 1.28 4.30 -3.83 -0.02 1.26 16 14 C -0.05 -0.66 0.42 -154.51 -0.07 -0.72 16 15 C -0.13 -1.79 7.62 37.16 0.28 -1.51 16 16 C -0.11 -1.57 4.26 -26.73 -0.11 -1.68 16 17 C -0.12 -1.41 5.65 -26.73 -0.15 -1.56 16 18 C -0.11 -1.18 5.78 -26.73 -0.15 -1.34 16 19 C -0.15 -1.51 5.36 -26.71 -0.14 -1.66 16 20 C 0.11 1.39 2.74 -26.71 -0.07 1.32 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 O -0.56 -7.10 11.30 -35.23 -0.40 -7.50 16 23 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.02 0.39 7.35 -51.93 -0.38 0.01 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.34 7.24 6.39 -39.29 -0.25 6.98 16 28 H 0.06 1.04 7.36 -51.93 -0.38 0.66 16 29 H 0.03 0.53 7.60 -51.93 -0.39 0.14 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.56 4.81 -51.93 -0.25 0.31 16 32 H 0.08 1.19 7.60 -51.93 -0.39 0.80 16 33 H 0.07 1.11 6.57 -51.93 -0.34 0.77 16 34 H 0.07 1.05 7.68 -51.93 -0.40 0.65 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 37 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 41 H 0.37 3.07 9.08 45.56 0.41 3.48 16 LS Contribution 304.21 15.07 4.58 4.58 Total: -1.00 -30.57 304.21 -7.10 -37.67 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.24 Total: 6.40 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -0.64 Total: -17.01 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.18 Total: -41.66 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.40 Total: -7.50 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.59 Total: 17.52 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.57 -7.10 -37.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308896525.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.182 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds