Wall clock time and date at job start Mon Mar 30 2020 04:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47562 * 2 1 4 4 C 1.50701 * 109.47511 * 239.99760 * 2 1 3 5 5 H 1.07997 * 119.99651 * 275.00422 * 4 2 1 6 6 C 1.37871 * 120.00069 * 95.00105 * 4 2 1 7 7 N 1.31510 * 120.00236 * 184.91793 * 6 4 2 8 8 Si 1.86796 * 119.99986 * 4.91676 * 6 4 2 9 9 H 1.48501 * 109.47328 * 84.83299 * 8 6 4 10 10 H 1.48503 * 109.47389 * 204.82986 * 8 6 4 11 11 H 1.48502 * 109.47483 * 324.82674 * 8 6 4 12 12 N 1.46904 * 109.46831 * 119.99693 * 2 1 3 13 13 C 1.46901 * 111.00276 * 274.99823 * 12 2 1 14 14 C 1.52996 * 109.47612 * 180.02562 * 13 12 2 15 15 C 1.52999 * 109.46845 * 300.00146 * 14 13 12 16 16 C 1.53001 * 109.46902 * 60.00078 * 14 13 12 17 17 C 1.52996 * 109.46896 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47246 * 299.99559 * 17 16 14 19 19 C 1.53001 * 109.46813 * 60.00390 * 18 17 16 20 20 C 1.52998 * 109.47487 * 180.02562 * 14 13 12 21 21 H 1.09000 * 109.46966 * 59.99705 * 20 14 13 22 22 O 1.42908 * 109.46937 * 300.00117 * 20 14 13 23 23 H 1.08994 * 109.47347 * 175.05586 * 1 2 3 24 24 H 1.09003 * 109.47090 * 295.05801 * 1 2 3 25 25 H 1.09003 * 109.46812 * 55.05436 * 1 2 3 26 26 H 0.96997 * 120.00653 * 180.02562 * 7 6 4 27 27 H 1.00907 * 111.00042 * 151.04776 * 12 2 1 28 28 H 1.09000 * 109.47064 * 59.99694 * 13 12 2 29 29 H 1.09004 * 109.47245 * 300.00743 * 13 12 2 30 30 H 1.09000 * 109.47533 * 299.99605 * 15 14 13 31 31 H 1.09003 * 109.46874 * 179.97438 * 15 14 13 32 32 H 1.09003 * 109.47062 * 59.99906 * 15 14 13 33 33 H 1.09003 * 109.47240 * 300.00238 * 16 14 13 34 34 H 1.08994 * 109.47451 * 60.00349 * 16 14 13 35 35 H 1.09000 * 109.47252 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.47798 * 60.00024 * 17 16 14 37 37 H 1.08991 * 109.47460 * 300.00582 * 18 17 16 38 38 H 1.09000 * 109.47476 * 179.97438 * 18 17 16 39 39 H 1.08995 * 109.47399 * 179.97438 * 19 18 17 40 40 H 1.09002 * 109.47307 * 59.99595 * 19 18 17 41 41 H 0.96696 * 113.99892 * 180.02562 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3603 0.0120 -2.3580 7 7 2.7061 -0.6133 -3.4621 8 14 2.3136 1.8789 -2.3174 9 1 3.5991 2.3948 -1.7821 10 1 2.1060 2.3989 -3.6928 11 1 1.1985 2.3274 -1.4452 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2227 2.3470 14 6 2.5961 -0.5327 3.5743 15 6 1.6471 -1.6890 3.8955 16 6 3.9934 -1.0849 3.2853 17 6 4.5068 -1.8408 4.5124 18 6 4.5722 -0.8880 5.7079 19 6 3.1749 -0.3358 5.9968 20 6 2.6609 0.4203 4.7695 21 1 1.6652 0.8133 4.9752 22 8 3.5470 1.5007 4.4697 23 1 -0.3634 -1.0238 -0.0886 24 1 -0.3633 0.4353 0.9310 25 1 -0.3633 0.5887 -0.8424 26 1 2.9372 -0.1051 -4.2553 27 1 2.9173 -1.1205 1.0289 28 1 1.0870 0.6165 2.5525 29 1 2.7587 1.0463 2.1182 30 1 0.6516 -1.2956 4.1014 31 1 2.0133 -2.2274 4.7697 32 1 1.6005 -2.3681 3.0441 33 1 3.9468 -1.7639 2.4339 34 1 4.6695 -0.2612 3.0565 35 1 5.5025 -2.2338 4.3068 36 1 3.8307 -2.6646 4.7410 37 1 5.2483 -0.0643 5.4794 38 1 4.9375 -1.4266 6.5822 39 1 3.2212 0.3425 6.8487 40 1 2.4987 -1.1597 6.2253 41 1 3.6372 2.1453 5.1848 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308896525.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:48 Heat of formation + Delta-G solvation = -96.984137 kcal Electronic energy + Delta-G solvation = -18725.198838 eV Core-core repulsion = 16023.886464 eV Total energy + Delta-G solvation = -2701.312373 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95212 -37.72602 -36.16764 -34.72401 -33.32212 -30.96782 -30.29706 -27.41484 -27.25393 -25.59403 -23.50122 -22.01730 -21.36107 -19.37943 -18.95445 -17.78179 -17.24433 -16.31899 -16.17772 -15.85810 -15.43385 -15.12068 -14.62422 -14.36963 -14.17626 -13.85700 -13.68970 -13.28553 -13.06361 -12.91946 -12.78589 -12.72100 -12.59031 -12.34985 -12.13503 -12.02000 -11.84055 -11.79956 -11.40507 -11.12040 -11.02686 -10.83002 -10.62162 -10.47315 -9.03128 -8.33699 -6.38171 1.28432 1.29959 1.40886 2.28910 3.00156 3.40445 3.53029 3.81037 3.89725 4.00201 4.21744 4.32259 4.45377 4.47830 4.51901 4.58256 4.68555 4.74755 4.81347 4.88047 4.89781 4.98092 5.02600 5.06469 5.14828 5.15332 5.19625 5.29156 5.34804 5.38533 5.49905 5.51333 5.57102 5.70409 5.72494 6.04809 6.54799 6.68477 6.85526 7.02497 7.31227 8.83062 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032898 B = 0.006243 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.911822 B = 4483.831283 C = 4539.543515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.180 3.820 3 H -0.004 1.004 4 C -0.519 4.519 5 H 0.039 0.961 6 C 0.018 3.982 7 N -0.943 5.943 8 Si 0.938 3.062 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.251 1.251 12 N -0.678 5.678 13 C 0.074 3.926 14 C -0.044 4.044 15 C -0.127 4.127 16 C -0.106 4.106 17 C -0.116 4.116 18 C -0.110 4.110 19 C -0.145 4.145 20 C 0.115 3.885 21 H 0.058 0.942 22 O -0.580 6.580 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.034 0.966 26 H 0.267 0.733 27 H 0.333 0.667 28 H 0.061 0.939 29 H 0.006 0.994 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 2.704 21.998 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.071 3.929 3 H 0.013 0.987 4 C -0.557 4.557 5 H 0.057 0.943 6 C -0.180 4.180 7 N -0.583 5.583 8 Si 0.763 3.237 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.174 1.174 12 N -0.310 5.310 13 C -0.056 4.056 14 C -0.045 4.045 15 C -0.184 4.184 16 C -0.144 4.144 17 C -0.154 4.154 18 C -0.148 4.148 19 C -0.182 4.182 20 C 0.056 3.944 21 H 0.076 0.924 22 O -0.387 6.387 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.151 0.849 28 H 0.079 0.921 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.199 2.155 21.416 21.526 hybrid contribution 0.864 1.501 -0.646 1.848 sum 1.063 3.656 20.770 21.116 Atomic orbital electron populations 1.21712 0.96638 1.00412 0.98822 1.19462 0.93526 0.91690 0.88214 0.98678 1.21292 1.43160 0.94284 0.97009 0.94299 1.25822 0.94235 1.03085 0.94861 1.70034 1.47935 1.37781 1.02535 0.85878 0.79567 0.80700 0.77583 1.19941 1.20738 1.17444 1.60700 1.32607 1.32910 1.04736 1.21945 0.98914 0.93409 0.91331 1.20492 0.95753 0.95183 0.93048 1.21767 0.97900 0.97035 1.01743 1.21472 0.95592 0.99038 0.98328 1.21549 1.00914 0.98342 0.94562 1.21407 0.97028 0.98740 0.97613 1.22241 0.97666 1.01190 0.97129 1.21785 0.92127 0.86729 0.93739 0.92422 1.86557 1.68035 1.38002 1.46137 0.93643 0.93465 0.94665 0.92410 0.84874 0.92099 0.97563 0.92731 0.90842 0.92726 0.93313 0.93684 0.92204 0.91011 0.92535 0.90764 0.90020 0.89927 0.76367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 9.42 71.98 0.68 -4.50 16 2 C 0.18 8.77 2.26 44.17 0.10 8.87 16 3 H 0.00 -0.22 4.95 -2.39 -0.01 -0.23 16 4 C -0.52 -30.22 8.84 25.60 0.23 -29.99 16 5 H 0.04 2.52 8.06 -2.91 -0.02 2.49 16 6 C 0.02 1.08 5.47 84.65 0.46 1.54 16 7 N -0.94 -59.44 13.96 21.44 0.30 -59.15 16 8 Si 0.94 45.71 26.99 68.60 1.85 47.56 16 9 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 11 H -0.25 -11.51 6.82 99.48 0.68 -10.83 16 12 N -0.68 -28.63 5.51 -495.45 -2.73 -31.36 16 13 C 0.07 2.62 4.30 86.30 0.37 2.99 16 14 C -0.04 -1.22 0.42 -52.18 -0.02 -1.24 16 15 C -0.13 -3.18 7.62 71.98 0.55 -2.64 16 16 C -0.11 -3.06 4.26 30.59 0.13 -2.93 16 17 C -0.12 -2.54 5.65 30.59 0.17 -2.36 16 18 C -0.11 -1.97 5.78 30.60 0.18 -1.80 16 19 C -0.14 -2.33 5.36 30.61 0.16 -2.16 16 20 C 0.12 2.50 2.74 30.61 0.08 2.59 16 21 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 22 O -0.58 -13.59 11.30 -148.98 -1.68 -15.28 16 23 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.05 1.80 7.35 -2.39 -0.02 1.78 16 25 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 27 H 0.33 14.76 6.39 -89.69 -0.57 14.19 16 28 H 0.06 2.11 7.36 -2.39 -0.02 2.09 16 29 H 0.01 0.25 7.60 -2.38 -0.02 0.23 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.47 4.81 -2.39 -0.01 1.46 16 32 H 0.05 1.62 7.60 -2.39 -0.02 1.61 16 33 H 0.05 1.58 6.57 -2.39 -0.02 1.56 16 34 H 0.04 1.46 7.68 -2.39 -0.02 1.44 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.44 6.43 -2.39 -0.02 1.43 16 37 H 0.06 1.13 7.68 -2.39 -0.02 1.11 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.22 6.43 -2.39 -0.02 1.20 16 41 H 0.39 5.43 9.08 -74.06 -0.67 4.76 16 Total: -1.00 -66.97 304.21 0.57 -66.41 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -0.26 Total: 23.46 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 3.09 Total: -31.64 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -2.43 Total: -90.51 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -1.68 Total: -15.28 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.85 Total: 47.56 kcal Total: -66.97 0.57 -66.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308896525.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.578 kcal (2) G-P(sol) polarization free energy of solvation -66.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds