Wall clock time and date at job start Mon Mar 30 2020 04:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47286 * 2 1 4 4 C 1.50698 * 109.46874 * 239.99655 * 2 1 3 5 5 H 1.07998 * 120.00497 * 240.00763 * 4 2 1 6 6 C 1.37881 * 119.99854 * 60.00492 * 4 2 1 7 7 N 1.31517 * 119.99678 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00383 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47140 * 89.99854 * 8 6 4 10 10 H 1.48498 * 109.47454 * 210.00163 * 8 6 4 11 11 H 1.48505 * 109.46820 * 330.00314 * 8 6 4 12 12 N 1.46903 * 109.46872 * 120.00474 * 2 1 3 13 13 C 1.46904 * 110.99847 * 274.99849 * 12 2 1 14 14 C 1.52994 * 109.46895 * 185.22865 * 13 12 2 15 15 H 1.08998 * 109.47278 * 304.37360 * 14 13 12 16 16 C 1.53007 * 109.47014 * 184.37714 * 14 13 12 17 17 O 1.42896 * 109.47219 * 62.88142 * 16 14 13 18 18 C 1.53003 * 109.47266 * 64.37720 * 14 13 12 19 19 C 1.53003 * 109.46838 * 184.99709 * 18 14 13 20 20 C 1.53779 * 113.61510 * 272.49533 * 19 18 14 21 21 C 1.53785 * 87.08084 * 220.01957 * 20 19 18 22 22 C 1.53781 * 87.07979 * 25.43397 * 21 20 19 23 23 H 1.09007 * 109.47071 * 300.00436 * 1 2 3 24 24 H 1.09005 * 109.46782 * 59.99178 * 1 2 3 25 25 H 1.08997 * 109.47755 * 179.97438 * 1 2 3 26 26 H 0.97006 * 119.99841 * 179.97438 * 7 6 4 27 27 H 1.00902 * 110.99937 * 38.94643 * 12 2 1 28 28 H 1.08997 * 109.47039 * 65.22138 * 13 12 2 29 29 H 1.09001 * 109.46742 * 305.22342 * 13 12 2 30 30 H 1.09003 * 109.46710 * 302.88280 * 16 14 13 31 31 H 1.09001 * 109.47226 * 182.88683 * 16 14 13 32 32 H 0.96700 * 113.99950 * 180.02562 * 17 16 14 33 33 H 1.09000 * 109.47055 * 304.99438 * 18 14 13 34 34 H 1.08999 * 109.47093 * 64.99853 * 18 14 13 35 35 H 1.09005 * 112.85248 * 43.80419 * 19 18 14 36 36 H 1.08997 * 113.61439 * 334.56980 * 20 19 18 37 37 H 1.09005 * 113.61266 * 105.47580 * 20 19 18 38 38 H 1.09000 * 113.61579 * 270.88529 * 21 20 19 39 39 H 1.08998 * 113.61549 * 139.97895 * 21 20 19 40 40 H 1.09003 * 113.61166 * 220.01947 * 22 21 20 41 41 H 1.08993 * 113.69459 * 89.12728 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 1.3446 -2.1614 -4.4124 10 1 2.4872 -0.1402 -5.1120 11 1 3.6306 -1.7567 -3.7120 12 7 2.0196 -0.6926 1.1994 13 6 2.0824 0.2224 2.3469 14 6 2.7169 -0.4971 3.5388 15 1 2.1594 -1.4092 3.7514 16 6 2.6832 0.4185 4.7642 17 8 1.3259 0.6956 5.1146 18 6 4.1678 -0.8518 3.2069 19 6 4.7640 -1.6795 4.3473 20 6 5.3840 -0.8280 5.4677 21 6 6.5150 -1.8684 5.5251 22 6 6.1847 -2.1925 4.0586 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7087 1.1614 -3.4844 27 1 1.4494 -1.4980 1.4100 28 1 1.0749 0.5439 2.6108 29 1 2.6846 1.0925 2.0852 30 1 3.1969 1.3521 4.5344 31 1 3.1809 -0.0739 5.5995 32 1 1.2283 1.2723 5.8846 33 1 4.1983 -1.4303 2.2836 34 1 4.7461 0.0636 3.0815 35 1 4.0858 -2.4524 4.7089 36 1 5.7130 0.1569 5.1364 37 1 4.7787 -0.7907 6.3735 38 1 6.3158 -2.6926 6.2100 39 1 7.5038 -1.4312 5.6635 40 1 6.2259 -3.2568 3.8268 41 1 6.7321 -1.5816 3.3410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308983352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:24 Heat of formation + Delta-G solvation = -51.657589 kcal Electronic energy + Delta-G solvation = -17884.356149 eV Core-core repulsion = 15185.009282 eV Total energy + Delta-G solvation = -2699.346867 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.27939 -37.19059 -35.79762 -33.59587 -31.73568 -28.47503 -27.14431 -25.60646 -25.06501 -24.01337 -22.60322 -20.14424 -19.78070 -19.20415 -17.27365 -16.23424 -15.69995 -15.15898 -14.82338 -14.48839 -14.20897 -13.85063 -13.04712 -12.99019 -12.59519 -12.43805 -12.34271 -12.00425 -11.58495 -11.39375 -11.34557 -10.97008 -10.83174 -10.68896 -10.49233 -10.37558 -10.27728 -10.09816 -10.01043 -9.86121 -9.84353 -9.50519 -8.88145 -8.29887 -7.08211 -5.91796 -3.94784 3.36344 3.42410 3.47096 4.40773 4.49355 4.64067 4.68220 4.73011 4.89181 5.11563 5.31541 5.39084 5.39534 5.59272 5.60799 5.68813 5.75943 5.82195 5.84779 5.88235 6.01024 6.05309 6.15689 6.25382 6.35021 6.57355 6.62167 6.75187 6.78351 6.81117 6.95650 7.21009 7.48360 7.74033 7.82578 7.96692 8.36986 8.65224 8.72760 9.12750 9.70299 11.15230 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024414 B = 0.005443 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.620417 B = 5143.346700 C = 6109.978812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.031 0.969 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.683 5.683 13 C 0.067 3.933 14 C -0.079 4.079 15 H 0.069 0.931 16 C 0.076 3.924 17 O -0.573 6.573 18 C -0.095 4.095 19 C -0.110 4.110 20 C -0.140 4.140 21 C -0.145 4.145 22 C -0.138 4.138 23 H 0.005 0.995 24 H 0.087 0.913 25 H 0.026 0.974 26 H 0.258 0.742 27 H 0.323 0.677 28 H 0.025 0.975 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.371 0.629 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.916 -2.101 16.464 17.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.312 5.312 13 C -0.063 4.063 14 C -0.098 4.098 15 H 0.088 0.912 16 C -0.002 4.002 17 O -0.377 6.377 18 C -0.133 4.133 19 C -0.129 4.129 20 C -0.177 4.177 21 C -0.182 4.182 22 C -0.175 4.175 23 H 0.024 0.976 24 H 0.106 0.894 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.139 0.861 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.217 0.783 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.412 -2.281 15.617 17.437 hybrid contribution -0.613 0.121 -0.159 0.645 sum 6.800 -2.159 15.458 17.025 Atomic orbital electron populations 1.22423 1.00845 0.99090 1.00409 1.19153 0.89533 0.94316 0.86658 0.95096 1.21181 1.29958 1.12257 0.89667 0.92015 1.24960 0.95447 0.95229 0.99011 1.69898 1.37506 1.23275 1.23189 0.86525 0.79206 0.79224 0.82577 1.20900 1.21448 1.19922 1.60789 1.57745 1.09102 1.03584 1.21833 0.98205 0.95707 0.90516 1.21150 0.97027 0.98198 0.93409 0.91238 1.22464 0.82434 0.98077 0.97208 1.86545 1.27099 1.71999 1.52057 1.21494 0.93637 0.99618 0.98535 1.22628 0.95750 0.98231 0.96250 1.23091 0.97633 0.98132 0.98867 1.22823 0.98623 0.99265 0.97520 1.22928 0.97073 1.01151 0.96343 0.97598 0.89427 0.95461 0.93178 0.86112 0.95644 0.92317 0.94135 0.93295 0.78315 0.89073 0.92352 0.89616 0.90227 0.91993 0.90622 0.91924 0.91778 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 8.94 37.16 0.33 -3.91 16 2 C 0.21 5.48 2.57 -68.86 -0.18 5.31 16 3 H 0.03 0.89 7.72 -51.93 -0.40 0.49 16 4 C -0.49 -13.88 8.84 -34.44 -0.30 -14.19 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.30 11.32 55.43 0.63 -25.68 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.68 -14.87 5.55 -107.95 -0.60 -15.47 16 13 C 0.07 1.28 4.84 -3.83 -0.02 1.26 16 14 C -0.08 -1.19 2.29 -90.62 -0.21 -1.40 16 15 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 16 C 0.08 0.97 5.97 37.16 0.22 1.19 16 17 O -0.57 -7.70 13.03 -35.23 -0.46 -8.15 16 18 C -0.10 -1.34 4.53 -26.73 -0.12 -1.46 16 19 C -0.11 -1.26 3.29 -89.81 -0.30 -1.56 16 20 C -0.14 -1.37 5.96 -25.92 -0.15 -1.52 16 21 C -0.14 -1.34 8.08 -25.92 -0.21 -1.55 16 22 C -0.14 -1.47 7.64 -25.92 -0.20 -1.67 16 23 H 0.00 0.12 7.56 -51.92 -0.39 -0.27 16 24 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 25 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.32 6.82 8.53 -39.29 -0.34 6.48 16 28 H 0.03 0.52 7.07 -51.93 -0.37 0.15 16 29 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.53 5.23 -51.93 -0.27 0.26 16 32 H 0.37 3.11 9.12 45.56 0.42 3.53 16 33 H 0.09 1.50 7.60 -51.93 -0.39 1.11 16 34 H 0.06 0.82 7.84 -51.93 -0.41 0.41 16 35 H 0.09 0.99 8.13 -51.93 -0.42 0.57 16 36 H 0.08 0.78 7.90 -51.93 -0.41 0.37 16 37 H 0.06 0.56 7.17 -51.93 -0.37 0.19 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 319.92 15.07 4.82 4.82 Total: -1.00 -30.11 319.92 -8.44 -38.55 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.59 Total: 7.17 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -1.23 Total: -18.07 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.03 Total: -41.15 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.46 Total: -8.15 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.11 -8.44 -38.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308983352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.105 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds