Wall clock time and date at job start Mon Mar 30 2020 04:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47286 * 2 1 4 4 C 1.50698 * 109.46874 * 239.99655 * 2 1 3 5 5 H 1.07998 * 120.00497 * 240.00763 * 4 2 1 6 6 C 1.37881 * 119.99854 * 60.00492 * 4 2 1 7 7 N 1.31517 * 119.99678 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00383 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47140 * 89.99854 * 8 6 4 10 10 H 1.48498 * 109.47454 * 210.00163 * 8 6 4 11 11 H 1.48505 * 109.46820 * 330.00314 * 8 6 4 12 12 N 1.46903 * 109.46872 * 120.00474 * 2 1 3 13 13 C 1.46904 * 110.99847 * 274.99849 * 12 2 1 14 14 C 1.52994 * 109.46895 * 185.22865 * 13 12 2 15 15 H 1.08998 * 109.47278 * 304.37360 * 14 13 12 16 16 C 1.53007 * 109.47014 * 184.37714 * 14 13 12 17 17 O 1.42896 * 109.47219 * 62.88142 * 16 14 13 18 18 C 1.53003 * 109.47266 * 64.37720 * 14 13 12 19 19 C 1.53003 * 109.46838 * 184.99709 * 18 14 13 20 20 C 1.53779 * 113.61510 * 272.49533 * 19 18 14 21 21 C 1.53785 * 87.08084 * 220.01957 * 20 19 18 22 22 C 1.53781 * 87.07979 * 25.43397 * 21 20 19 23 23 H 1.09007 * 109.47071 * 300.00436 * 1 2 3 24 24 H 1.09005 * 109.46782 * 59.99178 * 1 2 3 25 25 H 1.08997 * 109.47755 * 179.97438 * 1 2 3 26 26 H 0.97006 * 119.99841 * 179.97438 * 7 6 4 27 27 H 1.00902 * 110.99937 * 38.94643 * 12 2 1 28 28 H 1.08997 * 109.47039 * 65.22138 * 13 12 2 29 29 H 1.09001 * 109.46742 * 305.22342 * 13 12 2 30 30 H 1.09003 * 109.46710 * 302.88280 * 16 14 13 31 31 H 1.09001 * 109.47226 * 182.88683 * 16 14 13 32 32 H 0.96700 * 113.99950 * 180.02562 * 17 16 14 33 33 H 1.09000 * 109.47055 * 304.99438 * 18 14 13 34 34 H 1.08999 * 109.47093 * 64.99853 * 18 14 13 35 35 H 1.09005 * 112.85248 * 43.80419 * 19 18 14 36 36 H 1.08997 * 113.61439 * 334.56980 * 20 19 18 37 37 H 1.09005 * 113.61266 * 105.47580 * 20 19 18 38 38 H 1.09000 * 113.61579 * 270.88529 * 21 20 19 39 39 H 1.08998 * 113.61549 * 139.97895 * 21 20 19 40 40 H 1.09003 * 113.61166 * 220.01947 * 22 21 20 41 41 H 1.08993 * 113.69459 * 89.12728 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 1.3446 -2.1614 -4.4124 10 1 2.4872 -0.1402 -5.1120 11 1 3.6306 -1.7567 -3.7120 12 7 2.0196 -0.6926 1.1994 13 6 2.0824 0.2224 2.3469 14 6 2.7169 -0.4971 3.5388 15 1 2.1594 -1.4092 3.7514 16 6 2.6832 0.4185 4.7642 17 8 1.3259 0.6956 5.1146 18 6 4.1678 -0.8518 3.2069 19 6 4.7640 -1.6795 4.3473 20 6 5.3840 -0.8280 5.4677 21 6 6.5150 -1.8684 5.5251 22 6 6.1847 -2.1925 4.0586 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7087 1.1614 -3.4844 27 1 1.4494 -1.4980 1.4100 28 1 1.0749 0.5439 2.6108 29 1 2.6846 1.0925 2.0852 30 1 3.1969 1.3521 4.5344 31 1 3.1809 -0.0739 5.5995 32 1 1.2283 1.2723 5.8846 33 1 4.1983 -1.4303 2.2836 34 1 4.7461 0.0636 3.0815 35 1 4.0858 -2.4524 4.7089 36 1 5.7130 0.1569 5.1364 37 1 4.7787 -0.7907 6.3735 38 1 6.3158 -2.6926 6.2100 39 1 7.5038 -1.4312 5.6635 40 1 6.2259 -3.2568 3.8268 41 1 6.7321 -1.5816 3.3410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308983352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:23 Heat of formation + Delta-G solvation = -72.151491 kcal Electronic energy + Delta-G solvation = -17885.244831 eV Core-core repulsion = 15185.009282 eV Total energy + Delta-G solvation = -2700.235549 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.24254 -38.40503 -37.35902 -35.19585 -33.55146 -30.20686 -28.30012 -27.24494 -26.51207 -25.30370 -23.73784 -22.13777 -21.04084 -20.09903 -18.36674 -18.22977 -16.81554 -16.68995 -16.20245 -15.88285 -15.65005 -14.94391 -14.77804 -14.69869 -13.81662 -13.59492 -13.47293 -13.33555 -13.22996 -12.95294 -12.76933 -12.72313 -12.46925 -12.29832 -12.18709 -11.92122 -11.66567 -11.46786 -11.31975 -11.06071 -10.97287 -10.84397 -10.54051 -10.48430 -8.91766 -8.08742 -6.20270 1.43502 1.43832 1.55358 2.44802 3.19243 3.45112 3.63174 3.74267 3.83956 3.88384 4.06891 4.15394 4.34427 4.47444 4.60897 4.64713 4.69244 4.74923 4.78435 4.84045 4.90047 4.95813 4.98805 5.07700 5.12045 5.14212 5.16710 5.19886 5.38210 5.41804 5.50090 5.61421 5.68493 5.74020 5.82173 6.27471 6.66076 6.83473 6.94774 6.99591 7.49763 8.97126 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024414 B = 0.005443 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.620417 B = 5143.346700 C = 6109.978812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H -0.003 1.003 4 C -0.512 4.512 5 H 0.056 0.944 6 C 0.006 3.994 7 N -0.925 5.925 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.680 5.680 13 C 0.073 3.927 14 C -0.072 4.072 15 H 0.065 0.935 16 C 0.082 3.918 17 O -0.596 6.596 18 C -0.088 4.088 19 C -0.111 4.111 20 C -0.135 4.135 21 C -0.136 4.136 22 C -0.143 4.143 23 H 0.018 0.982 24 H 0.062 0.938 25 H 0.031 0.969 26 H 0.261 0.739 27 H 0.328 0.672 28 H 0.012 0.988 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.394 0.606 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.764 -2.840 17.785 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.107 3.893 3 H 0.015 0.985 4 C -0.551 4.551 5 H 0.074 0.926 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.789 3.211 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.194 1.194 12 N -0.309 5.309 13 C -0.057 4.057 14 C -0.091 4.091 15 H 0.083 0.917 16 C 0.004 3.996 17 O -0.404 6.404 18 C -0.125 4.125 19 C -0.130 4.130 20 C -0.172 4.172 21 C -0.173 4.173 22 C -0.181 4.181 23 H 0.037 0.963 24 H 0.081 0.919 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.145 0.855 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.243 0.757 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.262 -3.016 16.972 19.115 hybrid contribution -0.901 0.386 -0.546 1.122 sum 7.360 -2.630 16.426 18.190 Atomic orbital electron populations 1.22237 1.00320 0.99119 0.99760 1.18936 0.89832 0.92595 0.87985 0.98475 1.21445 1.30326 1.12374 0.90949 0.92603 1.25763 0.95486 0.95881 1.02010 1.70029 1.38188 1.24381 1.23955 0.85477 0.78800 0.78163 0.78677 1.20078 1.20963 1.19427 1.60689 1.57310 1.09414 1.03492 1.21840 0.97613 0.95304 0.90938 1.21086 0.97104 0.98128 0.92790 0.91676 1.22386 0.82589 0.97914 0.96675 1.86484 1.27387 1.72869 1.53633 1.21367 0.93175 0.99512 0.98485 1.22604 0.95978 0.98420 0.95960 1.23068 0.97673 0.98021 0.98424 1.22798 0.98947 0.99341 0.96254 1.22959 0.96542 1.01027 0.97568 0.96263 0.91924 0.94940 0.93038 0.85537 0.96987 0.93636 0.93640 0.90674 0.75720 0.92056 0.92584 0.89434 0.90142 0.90620 0.89553 0.91029 0.91781 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.93 8.94 71.98 0.64 -7.29 16 2 C 0.22 11.46 2.57 44.17 0.11 11.58 16 3 H 0.00 -0.16 7.72 -2.39 -0.02 -0.18 16 4 C -0.51 -29.35 8.84 25.60 0.23 -29.13 16 5 H 0.06 3.20 7.81 -2.91 -0.02 3.17 16 6 C 0.01 0.36 5.30 84.66 0.45 0.81 16 7 N -0.93 -54.87 11.32 21.45 0.24 -54.63 16 8 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 N -0.68 -30.18 5.55 -495.45 -2.75 -32.93 16 13 C 0.07 2.80 4.84 86.30 0.42 3.22 16 14 C -0.07 -2.13 2.29 -10.79 -0.02 -2.15 16 15 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 16 C 0.08 1.92 5.97 71.98 0.43 2.35 16 17 O -0.60 -14.89 13.03 -148.98 -1.94 -16.83 16 18 C -0.09 -2.42 4.53 30.60 0.14 -2.28 16 19 C -0.11 -2.36 3.29 -10.27 -0.03 -2.40 16 20 C -0.13 -2.26 5.96 31.12 0.19 -2.07 16 21 C -0.14 -2.15 8.08 31.12 0.25 -1.90 16 22 C -0.14 -2.86 7.64 31.12 0.24 -2.63 16 23 H 0.02 0.88 7.56 -2.38 -0.02 0.86 16 24 H 0.06 3.53 6.07 -2.38 -0.01 3.52 16 25 H 0.03 1.57 8.13 -2.39 -0.02 1.55 16 26 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 27 H 0.33 13.97 8.53 -89.69 -0.76 13.21 16 28 H 0.01 0.49 7.07 -2.39 -0.02 0.47 16 29 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.39 5.23 -2.39 -0.01 1.37 16 32 H 0.39 5.67 9.12 -74.06 -0.68 4.99 16 33 H 0.06 2.05 7.60 -2.39 -0.02 2.04 16 34 H 0.06 1.55 7.84 -2.39 -0.02 1.53 16 35 H 0.09 1.85 8.13 -2.38 -0.02 1.83 16 36 H 0.08 1.36 7.90 -2.39 -0.02 1.34 16 37 H 0.08 1.09 7.17 -2.38 -0.02 1.07 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 Total: -1.00 -64.59 319.92 0.17 -64.42 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -0.44 Total: 24.92 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: 3.03 Total: -31.89 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -2.51 Total: -87.56 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -1.94 Total: -16.83 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.59 0.17 -64.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308983352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.732 kcal (2) G-P(sol) polarization free energy of solvation -64.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds