Wall clock time and date at job start Mon Mar 30 2020 04:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47180 * 2 1 4 4 C 1.53010 * 109.47022 * 240.00141 * 2 1 3 5 5 H 1.09004 * 109.46923 * 305.29396 * 4 2 1 6 6 O 1.42894 * 109.46910 * 65.29411 * 4 2 1 7 7 C 1.52997 * 109.46852 * 185.29884 * 4 2 1 8 8 C 1.53000 * 115.55437 * 40.09937 * 7 4 2 9 9 N 1.46900 * 109.47304 * 175.15575 * 8 7 4 10 10 C 1.46894 * 110.99989 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.47476 * 34.99869 * 10 9 8 12 12 C 1.53004 * 109.47012 * 274.99509 * 10 9 8 13 13 C 1.50703 * 109.46953 * 154.99983 * 10 9 8 14 14 H 1.08003 * 120.00174 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99844 * 180.02562 * 13 10 9 16 16 N 1.31515 * 119.99868 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99990 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47258 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47037 * 119.99307 * 17 15 13 20 20 H 1.48496 * 109.47355 * 239.99506 * 17 15 13 21 21 C 1.53005 * 117.49416 * 254.38954 * 7 4 2 22 22 C 1.52997 * 60.00116 * 252.51211 * 21 7 4 23 23 H 1.09000 * 109.47053 * 175.00619 * 1 2 3 24 24 H 1.08995 * 109.46733 * 295.00871 * 1 2 3 25 25 H 1.08994 * 109.46740 * 55.00668 * 1 2 3 26 26 H 1.08996 * 109.47289 * 120.00604 * 2 1 3 27 27 H 1.08995 * 109.47055 * 60.00083 * 3 2 1 28 28 H 1.09000 * 109.47358 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47052 * 300.00187 * 3 2 1 30 30 H 0.96701 * 113.99873 * 60.00477 * 6 4 2 31 31 H 1.09004 * 109.46996 * 295.15658 * 8 7 4 32 32 H 1.09000 * 109.46901 * 55.15015 * 8 7 4 33 33 H 1.00910 * 110.99710 * 303.95551 * 9 8 7 34 34 H 1.08994 * 109.47294 * 300.00471 * 12 10 9 35 35 H 1.09002 * 109.46894 * 60.00513 * 12 10 9 36 36 H 1.08995 * 109.47205 * 179.97438 * 12 10 9 37 37 H 0.96999 * 120.00031 * 180.02562 * 16 15 13 38 38 H 1.09000 * 117.50318 * 0.02562 * 21 7 4 39 39 H 1.09001 * 117.49473 * 145.02064 * 21 7 4 40 40 H 1.09000 * 117.49935 * 252.51410 * 22 21 7 41 41 H 1.08998 * 117.49564 * 107.48726 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 1 1.6013 -1.7179 -1.2980 6 8 1.6679 0.0203 -2.4127 7 6 3.5642 -0.8376 -1.1845 8 6 4.1428 -1.1687 0.1926 9 7 5.5947 -1.3624 0.0801 10 6 6.1857 -1.6832 1.3861 11 1 5.4862 -2.2884 1.9627 12 6 6.4835 -0.3875 2.1433 13 6 7.4660 -2.4518 1.1829 14 1 7.8063 -2.6796 0.1835 15 6 8.2023 -2.8652 2.2728 16 7 7.7876 -2.5883 3.4898 17 14 9.7889 -3.8185 2.0210 18 1 10.0328 -3.9985 0.5672 19 1 10.9192 -3.0662 2.6225 20 1 9.6764 -5.1480 2.6729 21 6 4.3822 0.0832 -2.0922 22 6 4.2817 -1.4104 -2.4085 23 1 -0.3633 -1.0238 -0.0895 24 1 -0.3632 0.4344 0.9313 25 1 -0.3632 0.5893 -0.8419 26 1 1.8934 -0.5139 0.8899 27 1 1.6768 1.9563 0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 2.0240 0.9191 -2.4368 31 1 3.9380 -0.3477 0.8798 32 1 3.6825 -2.0818 0.5702 33 1 5.8127 -2.0752 -0.6001 34 1 7.1830 0.2177 1.5667 35 1 5.5575 0.1684 2.2903 36 1 6.9217 -0.6255 3.1125 37 1 8.3058 -2.8788 4.2566 38 1 3.8346 0.7722 -2.7353 39 1 5.3328 0.4535 -1.7082 40 1 5.1661 -2.0227 -2.2326 41 1 3.6678 -1.7042 -3.2599 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309009272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:05 Heat of formation + Delta-G solvation = -39.774219 kcal Electronic energy + Delta-G solvation = -18413.749170 eV Core-core repulsion = 15714.917605 eV Total energy + Delta-G solvation = -2698.831565 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.71364 -36.40480 -34.69160 -33.82539 -32.07691 -28.69595 -27.24273 -27.18475 -25.31630 -23.93712 -22.07478 -20.49931 -19.83404 -18.66937 -16.84972 -16.43270 -15.83597 -15.34227 -14.71815 -14.30819 -14.23566 -13.48012 -13.21300 -12.85659 -12.77138 -12.31346 -12.08429 -11.92354 -11.82404 -11.35170 -11.23931 -10.98676 -10.95140 -10.86856 -10.73263 -10.66117 -10.37742 -10.25535 -10.14845 -9.84132 -9.55033 -9.24527 -8.80376 -8.48594 -7.26143 -6.04118 -4.10456 3.27546 3.35521 3.39670 4.04148 4.37564 4.41805 4.76443 4.87420 4.96964 5.19791 5.22665 5.28243 5.29486 5.38158 5.62791 5.69057 5.71374 5.78506 5.89298 6.00636 6.04192 6.12548 6.23585 6.28244 6.30573 6.37529 6.44247 6.50779 6.65138 6.87730 7.12801 7.22738 7.50062 7.65249 7.77168 7.88900 8.26375 8.38212 8.66768 9.00397 9.55751 11.02287 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036659 B = 0.005469 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.611206 B = 5118.670512 C = 5499.256104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C -0.152 4.152 4 C 0.151 3.849 5 H 0.097 0.903 6 O -0.561 6.561 7 C -0.160 4.160 8 C 0.098 3.902 9 N -0.687 5.687 10 C 0.211 3.789 11 H 0.000 1.000 12 C -0.123 4.123 13 C -0.517 4.517 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.157 4.157 22 C -0.167 4.167 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.370 0.630 31 H 0.071 0.929 32 H 0.020 0.980 33 H 0.329 0.671 34 H 0.031 0.969 35 H 0.003 0.997 36 H 0.079 0.921 37 H 0.260 0.740 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.358 5.628 -7.652 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 C -0.209 4.209 4 C 0.091 3.909 5 H 0.114 0.886 6 O -0.368 6.368 7 C -0.161 4.161 8 C -0.032 4.032 9 N -0.320 5.320 10 C 0.104 3.896 11 H 0.017 0.983 12 C -0.181 4.181 13 C -0.555 4.555 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.724 3.276 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.194 4.194 22 C -0.204 4.204 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.220 0.780 31 H 0.089 0.911 32 H 0.038 0.962 33 H 0.148 0.852 34 H 0.050 0.950 35 H 0.022 0.978 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.463 5.719 -7.543 14.866 hybrid contribution 0.902 -0.972 0.353 1.372 sum -10.561 4.748 -7.190 13.630 Atomic orbital electron populations 1.21770 0.95042 1.01662 1.01451 1.21781 0.96027 0.97423 0.99370 1.21859 1.02258 0.95466 1.01354 1.21332 0.90704 0.94742 0.84100 0.88552 1.86529 1.76742 1.30026 1.43496 1.22377 0.93506 1.06871 0.93319 1.21335 0.90150 0.99065 0.92668 1.60809 1.07531 1.51404 1.12234 1.19090 0.93519 0.92712 0.84301 0.98274 1.21700 0.97235 0.96909 1.02276 1.21292 1.07120 1.34280 0.92849 0.92265 1.24921 0.97922 0.96046 0.95134 1.69908 1.38904 1.46371 0.97717 0.86474 0.83335 0.79530 0.78261 1.19765 1.20976 1.21103 1.22895 1.02120 0.92791 1.01594 1.22922 1.02441 0.97050 0.98008 0.92935 0.92989 0.92447 0.89904 0.92634 0.91311 0.93039 0.78024 0.91125 0.96157 0.85162 0.95031 0.97803 0.90193 0.92994 0.90006 0.87380 0.88436 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.04 37.16 0.34 -1.14 16 2 C -0.13 -1.49 2.27 -90.61 -0.21 -1.69 16 3 C -0.15 -1.67 8.40 37.16 0.31 -1.36 16 4 C 0.15 1.90 2.97 -26.73 -0.08 1.82 16 5 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 6 O -0.56 -6.84 12.12 -35.23 -0.43 -7.27 16 7 C -0.16 -2.29 1.53 -154.51 -0.24 -2.52 16 8 C 0.10 1.72 4.41 -3.82 -0.02 1.70 16 9 N -0.69 -14.28 5.35 -107.95 -0.58 -14.85 16 10 C 0.21 5.31 2.60 -68.86 -0.18 5.13 16 11 H 0.00 -0.01 7.80 -51.93 -0.40 -0.42 16 12 C -0.12 -3.04 9.19 37.16 0.34 -2.70 16 13 C -0.52 -14.13 8.59 -34.44 -0.30 -14.42 16 14 H 0.06 1.60 7.62 -52.48 -0.40 1.20 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -25.43 11.32 55.43 0.63 -24.81 16 17 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 C -0.16 -2.17 8.86 -26.73 -0.24 -2.40 16 22 C -0.17 -2.40 9.44 -26.73 -0.25 -2.65 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.59 7.96 -51.93 -0.41 0.18 16 26 H 0.08 1.07 6.63 -51.93 -0.34 0.73 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.86 6.31 -51.93 -0.33 0.53 16 29 H 0.05 0.49 6.71 -51.93 -0.35 0.14 16 30 H 0.37 3.75 5.49 45.56 0.25 4.00 16 31 H 0.07 1.27 5.58 -51.93 -0.29 0.98 16 32 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 33 H 0.33 6.81 6.05 -39.29 -0.24 6.57 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 36 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.08 0.96 6.32 -51.93 -0.33 0.63 16 39 H 0.11 1.71 7.75 -51.93 -0.40 1.31 16 40 H 0.10 1.51 6.21 -51.93 -0.32 1.19 16 41 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 311.42 15.07 4.69 4.69 Total: -1.00 -28.05 311.42 -7.67 -35.72 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.36 Total: 8.93 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -0.61 Total: -18.64 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.05 Total: -39.66 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.43 Total: -7.27 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.05 -7.67 -35.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309009272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.054 kcal (2) G-P(sol) polarization free energy of solvation -28.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds