Wall clock time and date at job start Mon Mar 30 2020 04:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47180 * 2 1 4 4 C 1.53010 * 109.47022 * 240.00141 * 2 1 3 5 5 H 1.09004 * 109.46923 * 305.29396 * 4 2 1 6 6 O 1.42894 * 109.46910 * 65.29411 * 4 2 1 7 7 C 1.52997 * 109.46852 * 185.29884 * 4 2 1 8 8 C 1.53000 * 115.55437 * 40.09937 * 7 4 2 9 9 N 1.46900 * 109.47304 * 175.15575 * 8 7 4 10 10 C 1.46894 * 110.99989 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.47476 * 34.99869 * 10 9 8 12 12 C 1.53004 * 109.47012 * 274.99509 * 10 9 8 13 13 C 1.50703 * 109.46953 * 154.99983 * 10 9 8 14 14 H 1.08003 * 120.00174 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99844 * 180.02562 * 13 10 9 16 16 N 1.31515 * 119.99868 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99990 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47258 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47037 * 119.99307 * 17 15 13 20 20 H 1.48496 * 109.47355 * 239.99506 * 17 15 13 21 21 C 1.53005 * 117.49416 * 254.38954 * 7 4 2 22 22 C 1.52997 * 60.00116 * 252.51211 * 21 7 4 23 23 H 1.09000 * 109.47053 * 175.00619 * 1 2 3 24 24 H 1.08995 * 109.46733 * 295.00871 * 1 2 3 25 25 H 1.08994 * 109.46740 * 55.00668 * 1 2 3 26 26 H 1.08996 * 109.47289 * 120.00604 * 2 1 3 27 27 H 1.08995 * 109.47055 * 60.00083 * 3 2 1 28 28 H 1.09000 * 109.47358 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47052 * 300.00187 * 3 2 1 30 30 H 0.96701 * 113.99873 * 60.00477 * 6 4 2 31 31 H 1.09004 * 109.46996 * 295.15658 * 8 7 4 32 32 H 1.09000 * 109.46901 * 55.15015 * 8 7 4 33 33 H 1.00910 * 110.99710 * 303.95551 * 9 8 7 34 34 H 1.08994 * 109.47294 * 300.00471 * 12 10 9 35 35 H 1.09002 * 109.46894 * 60.00513 * 12 10 9 36 36 H 1.08995 * 109.47205 * 179.97438 * 12 10 9 37 37 H 0.96999 * 120.00031 * 180.02562 * 16 15 13 38 38 H 1.09000 * 117.50318 * 0.02562 * 21 7 4 39 39 H 1.09001 * 117.49473 * 145.02064 * 21 7 4 40 40 H 1.09000 * 117.49935 * 252.51410 * 22 21 7 41 41 H 1.08998 * 117.49564 * 107.48726 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 1 1.6013 -1.7179 -1.2980 6 8 1.6679 0.0203 -2.4127 7 6 3.5642 -0.8376 -1.1845 8 6 4.1428 -1.1687 0.1926 9 7 5.5947 -1.3624 0.0801 10 6 6.1857 -1.6832 1.3861 11 1 5.4862 -2.2884 1.9627 12 6 6.4835 -0.3875 2.1433 13 6 7.4660 -2.4518 1.1829 14 1 7.8063 -2.6796 0.1835 15 6 8.2023 -2.8652 2.2728 16 7 7.7876 -2.5883 3.4898 17 14 9.7889 -3.8185 2.0210 18 1 10.0328 -3.9985 0.5672 19 1 10.9192 -3.0662 2.6225 20 1 9.6764 -5.1480 2.6729 21 6 4.3822 0.0832 -2.0922 22 6 4.2817 -1.4104 -2.4085 23 1 -0.3633 -1.0238 -0.0895 24 1 -0.3632 0.4344 0.9313 25 1 -0.3632 0.5893 -0.8419 26 1 1.8934 -0.5139 0.8899 27 1 1.6768 1.9563 0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 2.0240 0.9191 -2.4368 31 1 3.9380 -0.3477 0.8798 32 1 3.6825 -2.0818 0.5702 33 1 5.8127 -2.0752 -0.6001 34 1 7.1830 0.2177 1.5667 35 1 5.5575 0.1684 2.2903 36 1 6.9217 -0.6255 3.1125 37 1 8.3058 -2.8788 4.2566 38 1 3.8346 0.7722 -2.7353 39 1 5.3328 0.4535 -1.7082 40 1 5.1661 -2.0227 -2.2326 41 1 3.6678 -1.7042 -3.2599 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309009272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:04 Heat of formation + Delta-G solvation = -57.558206 kcal Electronic energy + Delta-G solvation = -18414.520342 eV Core-core repulsion = 15714.917605 eV Total energy + Delta-G solvation = -2699.602737 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83742 -37.85723 -36.22256 -34.82804 -33.96645 -30.49023 -28.41800 -28.09703 -27.33243 -25.45919 -23.23210 -21.83174 -21.40644 -19.91634 -18.58671 -17.64586 -17.13438 -16.69612 -16.36606 -15.80227 -15.55477 -14.95668 -14.58898 -14.47745 -13.90195 -13.60622 -13.44223 -13.08839 -12.91346 -12.87141 -12.75473 -12.68527 -12.46722 -12.24019 -12.18812 -12.07675 -11.96339 -11.74268 -11.57136 -11.30717 -10.87813 -10.72412 -10.56926 -10.34631 -9.04186 -8.15034 -6.29178 1.40045 1.41955 1.53629 2.40158 2.88632 3.13709 3.38368 3.59246 3.80658 3.93562 4.03819 4.05995 4.20976 4.29822 4.43192 4.69555 4.73729 4.79949 4.83979 4.88234 4.94163 4.94746 5.04215 5.05659 5.11303 5.17146 5.20397 5.23536 5.27875 5.46188 5.47251 5.48725 5.49345 5.66136 5.85451 6.21331 6.45666 6.76594 6.79320 6.98220 7.41552 8.90926 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036659 B = 0.005469 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.611206 B = 5118.670512 C = 5499.256104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C -0.149 4.149 4 C 0.160 3.840 5 H 0.093 0.907 6 O -0.561 6.561 7 C -0.158 4.158 8 C 0.102 3.898 9 N -0.680 5.680 10 C 0.215 3.785 11 H -0.034 1.034 12 C -0.110 4.110 13 C -0.536 4.536 14 H 0.058 0.942 15 C 0.013 3.987 16 N -0.918 5.918 17 Si 0.963 3.037 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.281 1.281 21 C -0.146 4.146 22 C -0.170 4.170 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.381 0.619 31 H 0.067 0.933 32 H 0.008 0.992 33 H 0.330 0.670 34 H 0.028 0.972 35 H 0.021 0.979 36 H 0.055 0.945 37 H 0.263 0.737 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 6.143 -8.971 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C -0.206 4.206 4 C 0.101 3.899 5 H 0.111 0.889 6 O -0.370 6.370 7 C -0.158 4.158 8 C -0.027 4.027 9 N -0.312 5.312 10 C 0.107 3.893 11 H -0.016 1.016 12 C -0.169 4.169 13 C -0.574 4.574 14 H 0.076 0.924 15 C -0.186 4.186 16 N -0.558 5.558 17 Si 0.788 3.212 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.206 1.206 21 C -0.182 4.182 22 C -0.207 4.207 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.232 0.768 31 H 0.085 0.915 32 H 0.026 0.974 33 H 0.149 0.851 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.987 6.248 -8.878 16.172 hybrid contribution 1.025 -1.112 0.762 1.694 sum -10.962 5.136 -8.116 14.575 Atomic orbital electron populations 1.21732 0.93780 1.01894 1.02094 1.21747 0.97050 0.97606 0.98122 1.21830 1.01104 0.95145 1.02556 1.21181 0.89004 0.94968 0.84781 0.88903 1.86526 1.76646 1.30777 1.43012 1.22251 0.94764 1.07535 0.91287 1.21300 0.88122 0.98350 0.94962 1.60733 1.09585 1.50882 1.10025 1.18901 0.92487 0.92135 0.85806 1.01634 1.21510 0.97749 0.96821 1.00777 1.21599 1.08061 1.34866 0.92904 0.92424 1.25732 1.01132 0.96909 0.94838 1.70031 1.40171 1.47126 0.98433 0.85436 0.79246 0.78110 0.78390 1.19103 1.20542 1.20643 1.22880 1.01280 0.92857 1.01229 1.22928 1.02070 0.97358 0.98311 0.92941 0.92274 0.91865 0.91657 0.92215 0.92988 0.91136 0.76817 0.91480 0.97370 0.85091 0.95323 0.96031 0.92608 0.92833 0.87248 0.89390 0.89953 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.04 71.98 0.65 -1.94 16 2 C -0.13 -2.77 2.27 -10.79 -0.02 -2.80 16 3 C -0.15 -3.00 8.40 71.98 0.60 -2.39 16 4 C 0.16 3.76 2.97 30.60 0.09 3.85 16 5 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 6 O -0.56 -12.01 12.12 -148.98 -1.81 -13.82 16 7 C -0.16 -4.34 1.53 -52.18 -0.08 -4.42 16 8 C 0.10 3.62 4.41 86.30 0.38 4.00 16 9 N -0.68 -28.61 5.35 -495.45 -2.65 -31.26 16 10 C 0.22 11.07 2.60 44.17 0.11 11.18 16 11 H -0.03 -1.94 7.80 -2.39 -0.02 -1.96 16 12 C -0.11 -5.54 9.19 71.98 0.66 -4.88 16 13 C -0.54 -29.64 8.59 25.60 0.22 -29.42 16 14 H 0.06 3.13 7.62 -2.91 -0.02 3.11 16 15 C 0.01 0.72 5.30 84.66 0.45 1.17 16 16 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16 17 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 C -0.15 -3.76 8.86 30.60 0.27 -3.49 16 22 C -0.17 -4.64 9.44 30.59 0.29 -4.35 16 23 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 25 H 0.06 1.12 7.96 -2.39 -0.02 1.11 16 26 H 0.07 1.66 6.63 -2.39 -0.02 1.65 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.05 1.22 6.31 -2.39 -0.02 1.21 16 29 H 0.07 1.13 6.71 -2.39 -0.02 1.12 16 30 H 0.38 6.35 5.49 -74.06 -0.41 5.95 16 31 H 0.07 2.42 5.58 -2.39 -0.01 2.41 16 32 H 0.01 0.31 8.05 -2.39 -0.02 0.29 16 33 H 0.33 13.82 6.05 -89.69 -0.54 13.28 16 34 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.02 0.95 7.45 -2.39 -0.02 0.94 16 36 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 37 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.11 2.22 6.32 -2.39 -0.02 2.20 16 39 H 0.09 2.69 7.75 -2.39 -0.02 2.67 16 40 H 0.08 2.52 6.21 -2.39 -0.01 2.50 16 41 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -59.50 311.42 1.51 -57.99 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.07 Total: 27.87 kcal Atomic # 6 Polarization: -37.12 SS G_CDS: 3.63 Total: -33.49 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -2.41 Total: -84.22 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -1.81 Total: -13.82 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -59.50 1.51 -57.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309009272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.436 kcal (2) G-P(sol) polarization free energy of solvation -59.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds