Wall clock time and date at job start Mon Mar 30 2020 03:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.53576 * 2 1 4 4 C 1.53111 * 109.50606 * 239.90174 * 2 1 3 5 5 C 1.53113 * 109.16330 * 182.40397 * 4 2 1 6 6 H 1.09005 * 109.50912 * 177.59377 * 5 4 2 7 7 C 1.52999 * 109.50550 * 297.71199 * 5 4 2 8 8 C 1.53042 * 109.27963 * 57.65533 * 5 4 2 9 9 N 1.46854 * 109.51987 * 300.82215 * 8 5 4 10 10 C 1.46900 * 111.00046 * 185.84148 * 9 8 5 11 11 C 1.53002 * 109.47299 * 75.79973 * 10 9 8 12 12 O 1.42906 * 109.46978 * 65.03150 * 11 10 9 13 13 C 1.42892 * 114.00161 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47525 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99452 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00293 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99908 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99860 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46833 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.46983 * 299.99886 * 18 16 14 21 21 H 1.48498 * 109.47418 * 60.00157 * 18 16 14 22 22 C 1.46841 * 111.19805 * 61.74004 * 9 8 5 23 23 H 1.09001 * 109.46776 * 180.10013 * 1 2 3 24 24 H 1.09000 * 109.47146 * 300.09879 * 1 2 3 25 25 H 1.08991 * 109.47010 * 60.09889 * 1 2 3 26 26 H 1.08994 * 109.52395 * 62.49709 * 4 2 1 27 27 H 1.09005 * 109.57301 * 302.33647 * 4 2 1 28 28 H 1.09001 * 109.47159 * 179.80284 * 7 5 4 29 29 H 1.09002 * 109.46906 * 299.80596 * 7 5 4 30 30 H 1.09001 * 109.46986 * 59.80182 * 7 5 4 31 31 H 1.08999 * 109.46144 * 180.80738 * 8 5 4 32 32 H 1.08999 * 109.45747 * 60.82861 * 8 5 4 33 33 H 1.08999 * 109.46710 * 315.80308 * 10 9 8 34 34 H 1.08996 * 109.47150 * 195.80127 * 10 9 8 35 35 H 1.09001 * 109.47408 * 305.03462 * 11 10 9 36 36 H 1.08994 * 109.47394 * 185.02891 * 11 10 9 37 37 H 1.09004 * 109.47270 * 59.99391 * 13 12 11 38 38 H 1.09003 * 109.46882 * 300.00247 * 13 12 11 39 39 H 0.96996 * 119.99803 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.46233 * 58.27618 * 22 9 8 41 41 H 1.08998 * 109.45984 * 178.24106 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2486 5 6 3.5712 -0.7719 -1.2107 6 1 3.9396 -1.3234 -2.0757 7 6 4.1279 0.6530 -1.2374 8 6 4.0230 -1.4729 0.0725 9 7 3.5092 -0.7420 1.2380 10 6 4.0372 -1.3057 2.4876 11 6 5.4923 -0.8691 2.6693 12 8 5.5463 0.5484 2.8422 13 6 6.8676 1.0624 3.0205 14 6 6.8060 2.5583 3.1919 15 1 5.8530 3.0658 3.1666 16 6 7.9661 3.2790 3.3808 17 7 9.1265 2.6608 3.4121 18 14 7.8895 5.1332 3.5939 19 1 9.2626 5.6671 3.7804 20 1 7.2795 5.7454 2.3863 21 1 7.0656 5.4610 4.7850 22 6 2.0410 -0.7234 1.2481 23 1 -0.3633 -1.0277 0.0018 24 1 -0.3633 0.5154 0.8891 25 1 -0.3633 0.5123 -0.8908 26 1 1.7157 -0.1871 -2.1397 27 1 1.6454 -1.7391 -1.2700 28 1 5.2169 0.6182 -1.2068 29 1 3.8058 1.1518 -2.1515 30 1 3.7575 1.2041 -0.3730 31 1 5.1121 -1.4961 0.1095 32 1 3.6374 -2.4924 0.0843 33 1 3.9870 -2.3937 2.4451 34 1 3.4427 -0.9470 3.3277 35 1 6.0687 -1.1497 1.7877 36 1 5.9115 -1.3585 3.5484 37 1 7.4722 0.8217 2.1460 38 1 7.3157 0.6129 3.9068 39 1 9.9427 3.1679 3.5446 40 1 1.6648 -1.7464 1.2545 41 1 1.6906 -0.2022 2.1390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338897457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:02 Heat of formation + Delta-G solvation = -85.533614 kcal Electronic energy + Delta-G solvation = -18205.369391 eV Core-core repulsion = 15504.553550 eV Total energy + Delta-G solvation = -2700.815841 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.53852 -38.45391 -35.64503 -34.74257 -33.98787 -30.67323 -28.79096 -27.73461 -27.35837 -24.95781 -24.39239 -22.85146 -21.71189 -19.59794 -18.59647 -17.44518 -17.26928 -16.51580 -16.15926 -15.82648 -15.57874 -15.45838 -14.92552 -14.73123 -14.26429 -13.79597 -13.71651 -13.55399 -13.03388 -12.90545 -12.80022 -12.74742 -12.52167 -12.48433 -12.38687 -12.13813 -11.86625 -11.77647 -11.36491 -11.27043 -11.02695 -10.96201 -10.82382 -10.15445 -9.05226 -8.30567 -6.42475 1.39314 1.44548 1.52848 2.35750 2.95989 3.02924 3.27229 3.79233 3.88083 3.97918 4.14788 4.27644 4.30191 4.35815 4.46494 4.57528 4.61770 4.64295 4.73020 4.77981 4.82483 4.85904 4.90619 4.93707 4.95928 4.98591 5.10049 5.20326 5.20477 5.22899 5.35051 5.46468 5.49151 5.56497 5.69188 5.99150 6.22965 6.32466 6.59070 6.88561 7.29766 8.81763 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027210 B = 0.005377 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.779231 B = 5206.532348 C = 5474.381334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 H 0.060 0.940 4 C -0.102 4.102 5 C -0.086 4.086 6 H 0.085 0.915 7 C -0.135 4.135 8 C 0.060 3.940 9 N -0.549 5.549 10 C 0.070 3.930 11 C 0.061 3.939 12 O -0.393 6.393 13 C 0.211 3.789 14 C -0.544 4.544 15 H 0.059 0.941 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.982 3.018 19 H -0.274 1.274 20 H -0.267 1.267 21 H -0.265 1.265 22 C 0.066 3.934 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.044 0.956 37 H -0.021 1.021 38 H -0.018 1.018 39 H 0.270 0.730 40 H 0.041 0.959 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.443 -9.231 -8.469 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 H 0.078 0.922 4 C -0.139 4.139 5 C -0.105 4.105 6 H 0.103 0.897 7 C -0.192 4.192 8 C -0.067 4.067 9 N -0.274 5.274 10 C -0.058 4.058 11 C -0.017 4.017 12 O -0.313 6.313 13 C 0.136 3.864 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.192 4.192 17 N -0.571 5.571 18 Si 0.804 3.196 19 H -0.198 1.198 20 H -0.191 1.191 21 H -0.190 1.190 22 C -0.061 4.061 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.062 0.938 37 H -0.003 1.003 38 H 0.000 1.000 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.256 -8.617 -8.475 19.464 hybrid contribution 0.691 -0.203 0.396 0.822 sum -14.565 -8.820 -8.080 18.848 Atomic orbital electron populations 1.21734 0.93462 1.02290 1.02134 1.21198 0.96110 0.99616 0.94211 0.92169 1.21622 0.93815 1.00819 0.97677 1.21174 0.96477 0.96280 0.96526 0.89718 1.21681 0.99385 0.96952 1.01220 1.22155 0.99225 0.94823 0.90540 1.61640 1.08670 1.55188 1.01854 1.22019 0.93735 0.97327 0.92682 1.22556 0.97646 0.82983 0.98470 1.87892 1.29311 1.20848 1.93203 1.19750 0.80006 0.94008 0.92644 1.21333 0.93897 0.92282 1.50686 0.92270 1.25949 0.94202 1.04884 0.94122 1.70067 0.98573 1.38406 1.50078 0.85260 0.77690 0.77315 0.79302 1.19835 1.19139 1.18952 1.22138 0.86132 0.99041 0.98809 0.91868 0.92759 0.91760 0.90907 0.91086 0.95145 0.92347 0.93241 0.92652 0.93778 0.91235 0.90478 0.94927 0.93785 1.00340 1.00019 0.92093 0.94053 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.20 71.98 0.66 -1.65 16 2 C -0.09 -2.03 2.53 -10.74 -0.03 -2.06 16 3 H 0.06 1.63 6.58 -2.38 -0.02 1.62 16 4 C -0.10 -1.99 4.79 30.67 0.15 -1.84 16 5 C -0.09 -2.03 3.21 -10.74 -0.03 -2.07 16 6 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 7 C -0.13 -3.96 8.75 71.98 0.63 -3.33 16 8 C 0.06 1.60 4.73 86.33 0.41 2.01 16 9 N -0.55 -16.64 3.82 -896.35 -3.42 -20.07 16 10 C 0.07 2.14 5.39 86.30 0.47 2.61 16 11 C 0.06 2.39 6.13 71.98 0.44 2.83 16 12 O -0.39 -20.28 10.27 -148.98 -1.53 -21.81 16 13 C 0.21 12.44 5.69 71.24 0.41 12.85 16 14 C -0.54 -33.71 9.43 25.60 0.24 -33.46 16 15 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 16 C 0.01 0.40 5.46 84.66 0.46 0.86 16 17 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 18 Si 0.98 45.64 29.54 68.60 2.03 47.66 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 C 0.07 1.63 4.71 86.33 0.41 2.04 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.71 6.01 -2.39 -0.01 1.70 16 31 H 0.05 1.67 6.65 -2.39 -0.02 1.66 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.70 8.00 -2.39 -0.02 1.68 16 34 H 0.08 2.36 7.79 -2.39 -0.02 2.34 16 35 H 0.03 1.28 6.70 -2.39 -0.02 1.27 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 37 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 38 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 39 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 1.67 7.93 -2.39 -0.02 1.66 16 Total: -1.00 -68.44 319.88 2.52 -65.92 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 0.96 Total: 6.75 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 4.21 Total: -21.21 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -3.14 Total: -77.31 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.53 Total: -21.81 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -68.44 2.52 -65.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338897457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.618 kcal (2) G-P(sol) polarization free energy of solvation -68.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds