Wall clock time and date at job start Mon Mar 30 2020 04:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47738 * 2 1 4 4 C 1.50702 * 109.47056 * 240.00120 * 2 1 3 5 5 H 1.08002 * 120.00225 * 275.20153 * 4 2 1 6 6 C 1.37881 * 120.00045 * 95.20220 * 4 2 1 7 7 N 1.31506 * 120.00256 * 174.57163 * 6 4 2 8 8 Si 1.86800 * 119.99604 * 354.57265 * 6 4 2 9 9 H 1.48504 * 109.47104 * 84.91621 * 8 6 4 10 10 H 1.48499 * 109.47035 * 204.90982 * 8 6 4 11 11 H 1.48498 * 109.47567 * 324.91073 * 8 6 4 12 12 N 1.46901 * 109.47229 * 120.00287 * 2 1 3 13 13 C 1.46848 * 111.00101 * 170.78606 * 12 2 1 14 14 C 1.53041 * 109.52053 * 185.84280 * 13 12 2 15 15 C 1.53121 * 109.27622 * 300.81794 * 14 13 12 16 16 C 1.53005 * 109.52190 * 177.56158 * 15 14 13 17 17 C 1.53000 * 109.46728 * 65.31986 * 16 15 14 18 18 C 1.53005 * 109.46728 * 179.97438 * 17 16 15 19 19 O 1.42903 * 109.47236 * 179.97438 * 18 17 16 20 20 C 1.53120 * 109.15798 * 57.66259 * 15 14 13 21 21 C 1.46844 * 111.00143 * 294.99969 * 12 2 1 22 22 H 1.08998 * 109.47637 * 186.03358 * 1 2 3 23 23 H 1.09002 * 109.47218 * 306.03754 * 1 2 3 24 24 H 1.09005 * 109.47139 * 66.03306 * 1 2 3 25 25 H 0.97000 * 120.00690 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.46209 * 305.85530 * 13 12 2 27 27 H 1.08997 * 109.46056 * 65.82759 * 13 12 2 28 28 H 1.09003 * 109.49907 * 180.88268 * 14 13 12 29 29 H 1.08995 * 109.50697 * 60.76164 * 14 13 12 30 30 H 1.08995 * 109.52706 * 297.75150 * 15 14 13 31 31 H 1.08998 * 109.46904 * 185.32252 * 16 15 14 32 32 H 1.09000 * 109.46754 * 305.32043 * 16 15 14 33 33 H 1.08997 * 109.47187 * 299.99540 * 17 16 15 34 34 H 1.08992 * 109.47133 * 60.00514 * 17 16 15 35 35 H 1.08995 * 109.47407 * 300.00283 * 18 17 16 36 36 H 1.09006 * 109.47097 * 60.00333 * 18 17 16 37 37 H 0.96694 * 113.99960 * 180.02562 * 19 18 17 38 38 H 1.08998 * 109.50362 * 182.40194 * 20 15 14 39 39 H 1.08997 * 109.50646 * 62.28174 * 20 15 14 40 40 H 1.09002 * 109.46252 * 294.17459 * 21 12 2 41 41 H 1.09006 * 109.46145 * 54.14433 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1323 -1.7858 -1.2302 6 6 2.3641 0.0125 -2.3567 7 7 2.9024 -0.5936 -3.3922 8 14 2.0492 1.8530 -2.4115 9 1 3.1903 2.5693 -1.7869 10 1 1.9047 2.2886 -3.8238 11 1 0.8023 2.1642 -1.6675 12 7 2.0196 -0.6926 1.1994 13 6 3.4709 -0.9052 1.1287 14 6 3.9221 -1.7535 2.3198 15 6 3.5557 -1.0338 3.6207 16 6 3.9495 -1.9048 4.8154 17 6 5.4717 -2.0531 4.8585 18 6 5.8656 -2.9236 6.0536 19 8 7.2873 -3.0626 6.0936 20 6 2.0457 -0.7814 3.6472 21 6 1.6489 0.0387 2.4176 22 1 -0.3634 -1.0219 0.1080 23 1 -0.3634 0.6046 0.8310 24 1 -0.3634 0.4175 -0.9391 25 1 3.1355 -0.0851 -4.1847 26 1 3.7175 -1.4215 0.2010 27 1 3.9807 0.0578 1.1548 28 1 5.0016 -1.8980 2.2755 29 1 3.4231 -2.7220 2.2867 30 1 4.0850 -0.0824 3.6722 31 1 3.6038 -1.4358 5.7366 32 1 3.4913 -2.8886 4.7144 33 1 5.8173 -2.5221 3.9373 34 1 5.9299 -1.0693 4.9595 35 1 5.5200 -2.4542 6.9746 36 1 5.4074 -3.9075 5.9531 37 1 7.6090 -3.6039 6.8275 38 1 1.7844 -0.2314 4.5513 39 1 1.5171 -1.7346 3.6350 40 1 2.1672 0.9974 2.4377 41 1 0.5720 0.2080 2.4261 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359743496.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:51 Heat of formation + Delta-G solvation = -74.111412 kcal Electronic energy + Delta-G solvation = -18062.432256 eV Core-core repulsion = 15362.111718 eV Total energy + Delta-G solvation = -2700.320538 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.83033 -37.25177 -35.41674 -32.89834 -31.51932 -30.35031 -29.12216 -25.88956 -25.25278 -22.74903 -21.99779 -20.90459 -19.68060 -19.04724 -17.44819 -16.88387 -15.78546 -15.49242 -14.46216 -14.24483 -14.00466 -13.83406 -13.41239 -13.16349 -12.98769 -12.50647 -12.39987 -12.15612 -11.71518 -11.58760 -11.26947 -11.09904 -10.99226 -10.77392 -10.63477 -10.46730 -10.36523 -10.15856 -10.10607 -9.76867 -9.70060 -9.51656 -9.00637 -8.51893 -7.22810 -6.08364 -4.05767 3.26593 3.35653 3.38513 4.02968 4.40804 4.82036 4.84227 4.95297 5.07877 5.15962 5.22853 5.30770 5.38821 5.61770 5.66544 5.75729 5.82368 5.90757 6.01277 6.10812 6.15450 6.18423 6.26674 6.33903 6.38398 6.45000 6.53362 6.60689 6.67485 6.72738 6.87094 6.93273 7.14889 7.39058 7.42640 7.63926 8.10141 8.22826 8.69569 9.01623 9.56109 11.04579 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034084 B = 0.005191 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.311755 B = 5392.453644 C = 5839.206704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.179 3.821 3 H -0.003 1.003 4 C -0.503 4.503 5 H 0.081 0.919 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.871 3.129 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.265 1.265 12 N -0.527 5.527 13 C 0.066 3.934 14 C -0.111 4.111 15 C -0.087 4.087 16 C -0.108 4.108 17 C -0.123 4.123 18 C 0.075 3.925 19 O -0.576 6.576 20 C -0.107 4.107 21 C 0.049 3.951 22 H 0.053 0.947 23 H 0.020 0.980 24 H 0.048 0.952 25 H 0.264 0.736 26 H 0.097 0.903 27 H 0.015 0.985 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.376 0.624 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.017 0.983 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 -1.837 17.848 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.073 3.927 3 H 0.015 0.985 4 C -0.541 4.541 5 H 0.099 0.901 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.698 3.302 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.252 5.252 13 C -0.062 4.062 14 C -0.149 4.149 15 C -0.106 4.106 16 C -0.146 4.146 17 C -0.160 4.160 18 C -0.003 4.003 19 O -0.381 6.381 20 C -0.144 4.144 21 C -0.079 4.079 22 H 0.072 0.928 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.115 0.885 27 H 0.033 0.967 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.222 0.778 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.035 0.965 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.120 -1.882 17.126 17.360 hybrid contribution 0.252 1.543 0.322 1.597 sum 2.372 -0.339 17.449 17.613 Atomic orbital electron populations 1.21973 0.98041 1.00365 0.98663 1.19640 0.92067 0.92031 0.88991 0.98506 1.20898 1.42852 0.95853 0.94522 0.90105 1.24973 0.94360 0.97865 0.95792 1.69891 1.41902 1.36289 1.05444 0.86975 0.79432 0.86651 0.77102 1.20538 1.21448 1.18920 1.62017 1.12911 1.48714 1.01554 1.21931 0.87844 0.97644 0.98810 1.21733 0.99789 0.99590 0.93806 1.21207 0.96281 0.98440 0.94656 1.21531 0.94183 1.00490 0.98388 1.21595 0.96266 1.00151 0.97993 1.22261 0.80741 0.98868 0.98405 1.86506 1.22130 1.75182 1.54325 1.21597 0.95293 1.00671 0.96882 1.22088 1.00126 0.94443 0.91284 0.92815 0.96146 0.93330 0.92641 0.88496 0.96720 0.92294 0.91549 0.91897 0.92342 0.91767 0.90682 0.91509 0.93986 0.93732 0.77751 0.92732 0.91401 0.96451 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.72 37.15 0.32 -2.55 16 2 C 0.18 4.29 1.67 -68.87 -0.11 4.18 16 3 H 0.00 -0.07 5.73 -51.93 -0.30 -0.36 16 4 C -0.50 -13.94 7.22 -34.44 -0.25 -14.19 16 5 H 0.08 2.47 7.87 -52.49 -0.41 2.05 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 8 Si 0.87 21.63 26.40 -169.99 -4.49 17.14 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.26 -6.31 6.44 56.52 0.36 -5.95 16 12 N -0.53 -11.09 4.52 -228.08 -1.03 -12.12 16 13 C 0.07 1.34 5.16 -3.83 -0.02 1.32 16 14 C -0.11 -1.79 5.08 -26.65 -0.14 -1.93 16 15 C -0.09 -1.21 2.25 -90.49 -0.20 -1.41 16 16 C -0.11 -1.20 4.69 -26.73 -0.13 -1.33 16 17 C -0.12 -1.38 5.35 -26.73 -0.14 -1.52 16 18 C 0.07 0.72 7.05 37.16 0.26 0.98 16 19 O -0.58 -6.00 13.66 -35.23 -0.48 -6.48 16 20 C -0.11 -1.52 5.38 -26.65 -0.14 -1.67 16 21 C 0.05 0.87 5.29 -3.83 -0.02 0.85 16 22 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 23 H 0.02 0.38 6.70 -51.93 -0.35 0.03 16 24 H 0.05 1.08 7.17 -51.93 -0.37 0.71 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.10 2.27 6.49 -51.93 -0.34 1.94 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.89 6.71 -51.93 -0.35 0.54 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.93 6.64 -51.93 -0.34 0.59 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.38 2.04 9.12 45.56 0.42 2.46 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 1.17 6.31 -51.93 -0.33 0.84 16 LS Contribution 311.22 15.07 4.69 4.69 Total: -1.00 -30.67 311.22 -7.82 -38.49 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.62 Total: -0.04 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -0.67 Total: -15.32 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.26 Total: -38.48 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.48 Total: -6.48 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.49 Total: 17.14 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.67 -7.82 -38.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359743496.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.619 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds