Wall clock time and date at job start Mon Mar 30 2020 04:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.47490 * 2 1 4 4 C 1.50706 * 109.46888 * 240.00719 * 2 1 3 5 5 H 1.08004 * 119.99771 * 240.00004 * 4 2 1 6 6 C 1.37874 * 120.00522 * 60.00234 * 4 2 1 7 7 N 1.31519 * 119.99556 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00565 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47040 * 59.99607 * 8 6 4 10 10 H 1.48498 * 109.47538 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47064 * 300.00249 * 8 6 4 12 12 N 1.46894 * 109.47100 * 120.00795 * 2 1 3 13 13 C 1.48003 * 110.99978 * 342.75784 * 12 2 1 14 14 C 1.50446 * 112.82688 * 191.34595 * 13 12 2 15 15 C 1.54310 * 108.50105 * 93.72710 * 14 13 12 16 16 H 1.08999 * 108.86696 * 42.11057 * 15 14 13 17 17 O 1.42897 * 108.94219 * 160.76474 * 15 14 13 18 18 C 1.45880 * 112.18274 * 281.46675 * 15 14 13 19 19 C 1.54311 * 112.18848 * 61.12055 * 18 15 14 20 20 C 1.53001 * 109.63239 * 161.75849 * 19 18 15 21 21 C 1.52996 * 109.63202 * 41.16294 * 19 18 15 22 22 C 1.48006 * 111.00125 * 214.03911 * 12 2 1 23 23 H 1.08999 * 109.47067 * 296.04566 * 1 2 3 24 24 H 1.09009 * 109.47172 * 56.04390 * 1 2 3 25 25 H 1.09000 * 109.47608 * 176.04307 * 1 2 3 26 26 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 27 27 H 1.08994 * 108.80811 * 312.20882 * 13 12 2 28 28 H 1.09000 * 108.80794 * 70.48667 * 13 12 2 29 29 H 1.09001 * 109.63178 * 334.02470 * 14 13 12 30 30 H 1.08994 * 109.63295 * 213.43304 * 14 13 12 31 31 H 0.96694 * 114.00023 * 302.67832 * 17 15 14 32 32 H 1.09000 * 108.94019 * 300.41353 * 18 15 14 33 33 H 1.09007 * 108.86365 * 181.77246 * 18 15 14 34 34 H 1.08994 * 109.47078 * 179.00109 * 20 19 18 35 35 H 1.09000 * 109.46951 * 299.00417 * 20 19 18 36 36 H 1.09000 * 109.47213 * 59.00316 * 20 19 18 37 37 H 1.09004 * 109.47248 * 339.29374 * 21 19 18 38 38 H 1.08998 * 109.46936 * 99.29341 * 21 19 18 39 39 H 1.08998 * 109.47230 * 219.29572 * 21 19 18 40 40 H 1.08998 * 108.81367 * 205.70359 * 22 12 2 41 41 H 1.09002 * 108.80500 * 324.07978 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3224 -1.1191 -4.0081 9 1 1.8279 -2.5194 -4.0085 10 1 1.8268 -0.4194 -5.2206 11 1 3.8073 -1.1186 -4.0079 12 7 2.0196 -0.6926 1.1993 13 6 0.9522 -0.8081 2.2181 14 6 1.4693 -1.2604 3.5565 15 6 1.7674 -0.0123 4.4136 16 1 0.9610 0.7086 4.2788 17 8 1.8208 -0.3961 5.7890 18 6 3.0315 0.6175 4.0483 19 6 3.0386 1.1035 2.5837 20 6 4.1580 2.1279 2.3875 21 6 1.6888 1.7402 2.2468 22 6 3.2759 -0.0821 1.6887 23 1 -0.3633 0.4512 0.9233 24 1 -0.3634 0.5741 -0.8525 25 1 -0.3634 -1.0252 -0.0709 26 1 0.7081 1.1612 -3.4843 27 1 0.4730 0.1637 2.3365 28 1 0.2085 -1.5241 1.8683 29 1 2.3837 -1.8377 3.4197 30 1 0.7164 -1.8735 4.0518 31 1 1.0149 -0.8237 6.1096 32 1 3.8383 -0.1023 4.1862 33 1 3.2030 1.4705 4.7050 34 1 4.1721 2.4562 1.3482 35 1 3.9836 2.9856 3.0371 36 1 5.1159 1.6718 2.6374 37 1 0.9354 1.3892 2.9520 38 1 1.7719 2.8249 2.3139 39 1 1.3975 1.4599 1.2345 40 1 3.8394 -0.8332 2.2421 41 1 3.8675 0.2393 0.8315 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395474489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:42 Heat of formation + Delta-G solvation = -9.790355 kcal Electronic energy + Delta-G solvation = -19461.026852 eV Core-core repulsion = 16763.495485 eV Total energy + Delta-G solvation = -2697.531367 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.51429 -36.83291 -34.80961 -32.79763 -31.56714 -29.07645 -28.11364 -26.94259 -25.29662 -24.28807 -23.05495 -20.72154 -18.92958 -18.17193 -17.34895 -16.52294 -15.57053 -15.14115 -14.59377 -14.15987 -14.01425 -13.79950 -13.37109 -12.65486 -12.54920 -12.15502 -11.93979 -11.74178 -11.59276 -11.43930 -10.97137 -10.88465 -10.73245 -10.62500 -10.59701 -10.44683 -10.22103 -10.15435 -9.90186 -9.71881 -9.55860 -9.31962 -8.98206 -8.32172 -6.88007 -5.95172 -3.98838 3.35342 3.39292 3.42940 4.25847 4.43633 4.79967 4.98520 5.09745 5.21023 5.32060 5.38429 5.45651 5.65909 5.80777 5.90515 5.93520 6.02048 6.04956 6.13878 6.21318 6.25802 6.33189 6.35160 6.47460 6.60873 6.66655 6.71201 6.74784 6.80749 6.86619 6.97852 7.04400 7.46157 7.70897 7.73584 7.93937 8.36011 8.38424 8.63461 9.08477 9.65896 11.10008 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034861 B = 0.007281 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.003187 B = 3844.842961 C = 4076.001874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.209 3.791 3 H 0.025 0.975 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.538 5.538 13 C 0.041 3.959 14 C -0.149 4.149 15 C 0.103 3.897 16 H 0.056 0.944 17 O -0.576 6.576 18 C -0.104 4.104 19 C -0.080 4.080 20 C -0.134 4.134 21 C -0.202 4.202 22 C 0.072 3.928 23 H 0.015 0.985 24 H 0.083 0.917 25 H 0.035 0.965 26 H 0.259 0.741 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.373 0.627 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.109 0.891 40 H 0.055 0.945 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.804 0.540 11.641 11.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.104 3.896 3 H 0.042 0.958 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.263 5.263 13 C -0.086 4.086 14 C -0.187 4.187 15 C 0.045 3.955 16 H 0.074 0.926 17 O -0.382 6.382 18 C -0.141 4.141 19 C -0.082 4.082 20 C -0.191 4.191 21 C -0.258 4.258 22 C -0.056 4.056 23 H 0.034 0.966 24 H 0.102 0.898 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.219 0.781 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.127 0.873 40 H 0.073 0.927 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.431 0.455 11.307 11.407 hybrid contribution -0.460 0.097 -0.580 0.746 sum 0.971 0.552 10.728 10.786 Atomic orbital electron populations 1.22235 0.98745 1.00328 0.99795 1.19398 0.91350 0.92596 0.86219 0.95833 1.21221 1.30339 1.12092 0.89513 0.92014 1.24938 0.95438 0.95184 0.98926 1.69877 1.37369 1.23230 1.23401 0.86597 0.79100 0.79717 0.82177 1.20382 1.21523 1.20402 1.62039 1.03526 1.54945 1.05788 1.22210 0.95156 1.00916 0.90365 1.22176 1.02362 0.97557 0.96628 1.21005 0.98737 0.95310 0.80436 0.92637 1.86514 1.43114 1.81760 1.26783 1.20503 0.97014 1.00156 0.96441 1.20822 0.96297 0.97020 0.94100 1.21881 0.97581 0.97817 1.01856 1.23310 0.96409 0.99718 1.06362 1.21926 0.93459 0.92679 0.97568 0.96610 0.89790 0.94611 0.93071 0.92727 0.91776 0.90504 0.91788 0.78060 0.91596 0.92148 0.92062 0.93282 0.92914 0.91571 0.93850 0.87267 0.92688 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 7.37 37.15 0.27 -3.29 16 2 C 0.21 5.05 1.29 -68.87 -0.09 4.96 16 3 H 0.02 0.63 5.73 -51.93 -0.30 0.33 16 4 C -0.49 -13.42 8.84 -34.44 -0.30 -13.73 16 5 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 6 C 0.06 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.26 11.36 55.43 0.63 -24.63 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 N -0.54 -11.17 4.50 -229.31 -1.03 -12.20 16 13 C 0.04 0.72 3.70 -4.49 -0.02 0.70 16 14 C -0.15 -2.21 5.25 -27.32 -0.14 -2.35 16 15 C 0.10 1.45 2.88 -29.42 -0.08 1.37 16 16 H 0.06 0.79 5.55 -51.93 -0.29 0.50 16 17 O -0.58 -7.63 13.24 -35.23 -0.47 -8.09 16 18 C -0.10 -1.53 4.02 -29.41 -0.12 -1.65 16 19 C -0.08 -1.29 0.77 -155.10 -0.12 -1.41 16 20 C -0.13 -1.94 7.96 37.16 0.30 -1.65 16 21 C -0.20 -3.45 7.24 37.16 0.27 -3.18 16 22 C 0.07 1.34 4.52 -4.49 -0.02 1.32 16 23 H 0.02 0.31 5.44 -51.93 -0.28 0.03 16 24 H 0.08 2.17 6.18 -51.92 -0.32 1.85 16 25 H 0.03 0.83 7.59 -51.93 -0.39 0.44 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.06 0.96 2.46 -51.93 -0.13 0.83 16 28 H 0.06 1.19 7.12 -51.93 -0.37 0.82 16 29 H 0.08 1.24 7.08 -51.93 -0.37 0.87 16 30 H 0.06 0.81 8.04 -51.93 -0.42 0.39 16 31 H 0.37 3.34 8.97 45.56 0.41 3.75 16 32 H 0.07 0.99 7.52 -51.93 -0.39 0.60 16 33 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 34 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.05 0.65 8.13 -51.93 -0.42 0.22 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.06 3.19 -51.93 -0.17 0.89 16 38 H 0.04 0.69 7.73 -51.93 -0.40 0.29 16 39 H 0.11 2.21 2.13 -51.93 -0.11 2.09 16 40 H 0.05 0.97 6.59 -51.93 -0.34 0.63 16 41 H 0.07 1.49 7.36 -51.93 -0.38 1.11 16 LS Contribution 286.25 15.07 4.31 4.31 Total: -1.00 -28.49 286.25 -7.20 -35.69 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.47 Total: 6.00 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -0.15 Total: -17.48 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.40 Total: -36.83 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.47 Total: -8.09 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.49 -7.20 -35.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395474489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.902 kcal (2) G-P(sol) polarization free energy of solvation -28.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds