Wall clock time and date at job start Mon Mar 30 2020 04:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.47490 * 2 1 4 4 C 1.50706 * 109.46888 * 240.00719 * 2 1 3 5 5 H 1.08004 * 119.99771 * 240.00004 * 4 2 1 6 6 C 1.37874 * 120.00522 * 60.00234 * 4 2 1 7 7 N 1.31519 * 119.99556 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00565 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47040 * 59.99607 * 8 6 4 10 10 H 1.48498 * 109.47538 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47064 * 300.00249 * 8 6 4 12 12 N 1.46894 * 109.47100 * 120.00795 * 2 1 3 13 13 C 1.48003 * 110.99978 * 342.75784 * 12 2 1 14 14 C 1.50446 * 112.82688 * 191.34595 * 13 12 2 15 15 C 1.54310 * 108.50105 * 93.72710 * 14 13 12 16 16 H 1.08999 * 108.86696 * 42.11057 * 15 14 13 17 17 O 1.42897 * 108.94219 * 160.76474 * 15 14 13 18 18 C 1.45880 * 112.18274 * 281.46675 * 15 14 13 19 19 C 1.54311 * 112.18848 * 61.12055 * 18 15 14 20 20 C 1.53001 * 109.63239 * 161.75849 * 19 18 15 21 21 C 1.52996 * 109.63202 * 41.16294 * 19 18 15 22 22 C 1.48006 * 111.00125 * 214.03911 * 12 2 1 23 23 H 1.08999 * 109.47067 * 296.04566 * 1 2 3 24 24 H 1.09009 * 109.47172 * 56.04390 * 1 2 3 25 25 H 1.09000 * 109.47608 * 176.04307 * 1 2 3 26 26 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 27 27 H 1.08994 * 108.80811 * 312.20882 * 13 12 2 28 28 H 1.09000 * 108.80794 * 70.48667 * 13 12 2 29 29 H 1.09001 * 109.63178 * 334.02470 * 14 13 12 30 30 H 1.08994 * 109.63295 * 213.43304 * 14 13 12 31 31 H 0.96694 * 114.00023 * 302.67832 * 17 15 14 32 32 H 1.09000 * 108.94019 * 300.41353 * 18 15 14 33 33 H 1.09007 * 108.86365 * 181.77246 * 18 15 14 34 34 H 1.08994 * 109.47078 * 179.00109 * 20 19 18 35 35 H 1.09000 * 109.46951 * 299.00417 * 20 19 18 36 36 H 1.09000 * 109.47213 * 59.00316 * 20 19 18 37 37 H 1.09004 * 109.47248 * 339.29374 * 21 19 18 38 38 H 1.08998 * 109.46936 * 99.29341 * 21 19 18 39 39 H 1.08998 * 109.47230 * 219.29572 * 21 19 18 40 40 H 1.08998 * 108.81367 * 205.70359 * 22 12 2 41 41 H 1.09002 * 108.80500 * 324.07978 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3224 -1.1191 -4.0081 9 1 1.8279 -2.5194 -4.0085 10 1 1.8268 -0.4194 -5.2206 11 1 3.8073 -1.1186 -4.0079 12 7 2.0196 -0.6926 1.1993 13 6 0.9522 -0.8081 2.2181 14 6 1.4693 -1.2604 3.5565 15 6 1.7674 -0.0123 4.4136 16 1 0.9610 0.7086 4.2788 17 8 1.8208 -0.3961 5.7890 18 6 3.0315 0.6175 4.0483 19 6 3.0386 1.1035 2.5837 20 6 4.1580 2.1279 2.3875 21 6 1.6888 1.7402 2.2468 22 6 3.2759 -0.0821 1.6887 23 1 -0.3633 0.4512 0.9233 24 1 -0.3634 0.5741 -0.8525 25 1 -0.3634 -1.0252 -0.0709 26 1 0.7081 1.1612 -3.4843 27 1 0.4730 0.1637 2.3365 28 1 0.2085 -1.5241 1.8683 29 1 2.3837 -1.8377 3.4197 30 1 0.7164 -1.8735 4.0518 31 1 1.0149 -0.8237 6.1096 32 1 3.8383 -0.1023 4.1862 33 1 3.2030 1.4705 4.7050 34 1 4.1721 2.4562 1.3482 35 1 3.9836 2.9856 3.0371 36 1 5.1159 1.6718 2.6374 37 1 0.9354 1.3892 2.9520 38 1 1.7719 2.8249 2.3139 39 1 1.3975 1.4599 1.2345 40 1 3.8394 -0.8332 2.2421 41 1 3.8675 0.2393 0.8315 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395474489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:41 Heat of formation + Delta-G solvation = -30.076789 kcal Electronic energy + Delta-G solvation = -19461.906538 eV Core-core repulsion = 16763.495485 eV Total energy + Delta-G solvation = -2698.411053 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.87930 -38.08599 -36.31611 -34.53798 -33.02044 -30.78839 -29.46345 -28.27401 -27.20149 -25.81579 -24.51318 -22.18912 -20.49437 -19.49009 -18.56339 -18.37251 -17.06687 -16.77803 -16.13426 -15.78368 -15.38221 -15.17749 -14.70786 -14.24355 -13.82506 -13.56165 -13.50988 -13.16407 -13.02222 -12.88550 -12.78069 -12.55415 -12.38354 -12.30363 -12.13472 -11.87341 -11.73964 -11.62429 -11.42263 -11.27419 -11.20091 -10.93915 -10.46434 -10.33199 -8.55957 -8.01941 -6.15056 1.42917 1.43799 1.51561 2.45058 3.20721 3.21439 3.35003 3.69952 3.89582 3.93815 4.12534 4.26008 4.41570 4.50270 4.57906 4.64279 4.69436 4.79575 4.84339 4.86877 4.93882 4.98625 5.07251 5.09157 5.11858 5.15373 5.18755 5.26775 5.33699 5.42695 5.44801 5.48805 5.61737 5.79871 5.89385 6.40444 6.67297 6.84250 6.91277 6.99287 7.53934 8.98631 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034861 B = 0.007281 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.003187 B = 3844.842961 C = 4076.001874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.219 3.781 3 H 0.002 0.998 4 C -0.513 4.513 5 H 0.048 0.952 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.553 5.553 13 C 0.042 3.958 14 C -0.142 4.142 15 C 0.110 3.890 16 H 0.060 0.940 17 O -0.582 6.582 18 C -0.099 4.099 19 C -0.076 4.076 20 C -0.131 4.131 21 C -0.200 4.200 22 C 0.077 3.923 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.027 0.973 26 H 0.260 0.740 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.393 0.607 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 0.308 13.351 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.113 3.887 3 H 0.019 0.981 4 C -0.552 4.552 5 H 0.066 0.934 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.278 5.278 13 C -0.084 4.084 14 C -0.179 4.179 15 C 0.052 3.948 16 H 0.078 0.922 17 O -0.391 6.391 18 C -0.136 4.136 19 C -0.078 4.078 20 C -0.189 4.189 21 C -0.256 4.256 22 C -0.051 4.051 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.243 0.757 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.505 0.211 13.041 13.129 hybrid contribution -0.484 0.147 -1.064 1.179 sum 1.021 0.359 11.977 12.026 Atomic orbital electron populations 1.22030 0.98298 0.99388 0.99877 1.19119 0.91478 0.91238 0.86849 0.98132 1.21545 1.30381 1.11928 0.91364 0.93419 1.25620 0.95654 0.95861 1.01493 1.69996 1.38085 1.24187 1.23854 0.85699 0.78640 0.78704 0.79071 1.20076 1.20963 1.20024 1.61900 1.04859 1.54859 1.06152 1.22232 0.94229 1.00895 0.91076 1.22126 1.02467 0.98227 0.95124 1.20820 0.98352 0.94747 0.80908 0.92221 1.86478 1.44795 1.82037 1.25769 1.20424 0.97526 1.00574 0.95088 1.20727 0.96287 0.96135 0.94635 1.21852 0.97723 0.98149 1.01155 1.23217 0.97339 1.00370 1.04634 1.21876 0.92217 0.94010 0.97035 0.93953 0.92586 0.95403 0.93118 0.92386 0.92800 0.91715 0.89078 0.75735 0.91704 0.91111 0.93894 0.91466 0.91640 0.90232 0.93055 0.90483 0.91780 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.52 7.37 71.98 0.53 -5.99 16 2 C 0.22 10.82 1.29 44.17 0.06 10.88 16 3 H 0.00 0.08 5.73 -2.39 -0.01 0.07 16 4 C -0.51 -28.68 8.84 25.60 0.23 -28.45 16 5 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -52.82 11.36 21.45 0.24 -52.58 16 8 Si 0.95 44.44 29.54 68.60 2.03 46.47 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 12 N -0.55 -23.03 4.50 -879.41 -3.95 -26.98 16 13 C 0.04 1.45 3.70 85.26 0.32 1.76 16 14 C -0.14 -3.82 5.25 30.21 0.16 -3.67 16 15 C 0.11 2.74 2.88 28.86 0.08 2.83 16 16 H 0.06 1.47 5.55 -2.39 -0.01 1.46 16 17 O -0.58 -13.16 13.24 -148.98 -1.97 -15.13 16 18 C -0.10 -2.64 4.02 28.86 0.12 -2.52 16 19 C -0.08 -2.34 0.77 -52.57 -0.04 -2.38 16 20 C -0.13 -3.65 7.96 71.98 0.57 -3.07 16 21 C -0.20 -6.59 7.24 71.98 0.52 -6.07 16 22 C 0.08 2.85 4.52 85.26 0.39 3.24 16 23 H 0.04 1.72 5.44 -2.39 -0.01 1.71 16 24 H 0.06 2.96 6.18 -2.38 -0.01 2.94 16 25 H 0.03 1.30 7.59 -2.39 -0.02 1.28 16 26 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 27 H 0.06 1.95 2.46 -2.39 -0.01 1.94 16 28 H 0.05 1.94 7.12 -2.39 -0.02 1.92 16 29 H 0.06 1.94 7.08 -2.39 -0.02 1.92 16 30 H 0.09 1.98 8.04 -2.39 -0.02 1.96 16 31 H 0.39 5.40 8.97 -74.06 -0.66 4.73 16 32 H 0.06 1.77 7.52 -2.39 -0.02 1.75 16 33 H 0.07 1.78 8.00 -2.38 -0.02 1.76 16 34 H 0.04 1.33 8.09 -2.39 -0.02 1.31 16 35 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 2.36 3.19 -2.39 -0.01 2.36 16 38 H 0.05 1.58 7.73 -2.39 -0.02 1.56 16 39 H 0.08 3.12 2.13 -2.39 -0.01 3.12 16 40 H 0.06 2.23 6.59 -2.39 -0.02 2.21 16 41 H 0.04 1.91 7.36 -2.39 -0.02 1.89 16 Total: -1.00 -61.35 286.25 0.09 -61.27 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.37 Total: 19.31 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 3.37 Total: -32.34 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -3.71 Total: -79.56 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -1.97 Total: -15.13 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -61.35 0.09 -61.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395474489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.190 kcal (2) G-P(sol) polarization free energy of solvation -61.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds