Wall clock time and date at job start Mon Mar 30 2020 03:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.27470 * 2 1 4 4 C 1.53998 * 110.30604 * 122.09083 * 2 1 3 5 5 H 1.09004 * 110.07629 * 239.57888 * 4 2 1 6 6 C 1.52996 * 109.91856 * 0.78817 * 4 2 1 7 7 N 1.47909 * 107.05552 * 120.14293 * 4 2 1 8 8 C 1.46894 * 110.99473 * 214.15223 * 7 4 2 9 9 C 1.53009 * 109.46764 * 170.00186 * 8 7 4 10 10 O 1.42899 * 109.47113 * 64.99856 * 9 8 7 11 11 C 1.42903 * 113.99629 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.46878 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.48531 * 105.81801 * 334.66718 * 7 4 2 21 21 C 1.54593 * 110.30786 * 237.80632 * 2 1 3 22 22 H 1.09004 * 110.72635 * 144.68340 * 21 2 1 23 23 C 1.52999 * 110.72627 * 21.57745 * 21 2 1 24 24 H 1.08997 * 109.46912 * 297.90615 * 1 2 3 25 25 H 1.09003 * 109.47168 * 57.90914 * 1 2 3 26 26 H 1.09000 * 109.47216 * 177.91053 * 1 2 3 27 27 H 1.08997 * 109.46873 * 179.04295 * 6 4 2 28 28 H 1.09000 * 109.47391 * 299.04229 * 6 4 2 29 29 H 1.08997 * 109.47138 * 59.04526 * 6 4 2 30 30 H 1.09000 * 109.47283 * 50.00135 * 8 7 4 31 31 H 1.09002 * 109.47562 * 289.99455 * 8 7 4 32 32 H 1.09007 * 109.46516 * 304.99789 * 9 8 7 33 33 H 1.09004 * 109.47113 * 185.00258 * 9 8 7 34 34 H 1.09002 * 109.47382 * 59.99956 * 11 10 9 35 35 H 1.09001 * 109.46938 * 299.99942 * 11 10 9 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.09001 * 110.66881 * 157.64442 * 20 7 4 38 38 H 1.09004 * 110.66906 * 280.76914 * 20 7 4 39 39 H 1.09000 * 109.47219 * 59.99738 * 23 21 2 40 40 H 1.09001 * 109.47477 * 179.97438 * 23 21 2 41 41 H 1.09005 * 109.47063 * 299.99831 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0645 -0.7673 1.2236 5 1 2.6805 -0.1102 1.8375 6 6 0.8964 -1.3089 2.0501 7 7 2.8809 -1.8885 0.7099 8 6 2.7668 -3.0653 1.5816 9 6 3.4143 -4.2712 0.8977 10 8 4.8174 -4.0412 0.7547 11 6 5.5206 -5.1131 0.1233 12 6 6.9835 -4.7648 0.0247 13 1 7.3405 -3.8197 0.4064 14 6 7.8663 -5.6533 -0.5519 15 7 7.4316 -6.8043 -1.0162 16 14 9.6797 -5.2218 -0.6735 17 1 10.2291 -5.0035 0.6888 18 1 10.4105 -6.3356 -1.3297 19 1 9.8412 -3.9833 -1.4767 20 6 2.3584 -2.1803 -0.6495 21 6 2.0666 -0.7724 -1.2269 22 1 2.9806 -0.3126 -1.6028 23 6 1.0065 -0.8437 -2.3279 24 1 -0.3633 0.4810 0.9081 25 1 -0.3634 0.5460 -0.8707 26 1 -0.3633 -1.0270 -0.0375 27 1 1.2828 -1.8648 2.9044 28 1 0.2853 -0.4784 2.4034 29 1 0.2891 -1.9696 1.4314 30 1 1.7144 -3.2766 1.7708 31 1 3.2735 -2.8682 2.5264 32 1 2.9673 -4.4141 -0.0862 33 1 3.2520 -5.1629 1.5034 34 1 5.1174 -5.2731 -0.8766 35 1 5.4021 -6.0224 0.7127 36 1 8.0526 -7.4292 -1.4222 37 1 3.1104 -2.6935 -1.2488 38 1 1.4433 -2.7697 -0.5917 39 1 0.7363 0.1657 -2.6380 40 1 1.4057 -1.3912 -3.1818 41 1 0.1224 -1.3561 -1.9484 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399693945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:56 Heat of formation + Delta-G solvation = -47.565358 kcal Electronic energy + Delta-G solvation = -18204.160919 eV Core-core repulsion = 15504.991505 eV Total energy + Delta-G solvation = -2699.169414 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09898 -36.66498 -34.23563 -32.64650 -32.15178 -29.23726 -27.66537 -26.90001 -25.12994 -25.06981 -22.26671 -21.81540 -19.35783 -18.68594 -16.81406 -16.32972 -15.53118 -15.31899 -15.02499 -14.45682 -14.08037 -13.96203 -13.63910 -13.08618 -12.92772 -12.77099 -12.53365 -12.00103 -11.86269 -11.74373 -11.53673 -11.30922 -11.17891 -10.89894 -10.76004 -10.66329 -10.52601 -10.33598 -10.30886 -10.22940 -9.89492 -9.03735 -8.73260 -8.08669 -8.00949 -6.04760 -4.05600 3.36957 3.38899 3.43585 4.16438 4.40906 4.57489 4.60072 4.83153 4.99451 5.16373 5.22065 5.29549 5.31639 5.39841 5.40844 5.44843 5.58066 5.61136 5.70556 5.75926 5.78517 5.82691 5.91628 5.95001 5.98925 6.08034 6.13023 6.20472 6.30601 6.34789 6.43494 6.45678 7.16512 7.20347 7.36048 7.49883 7.87096 8.23509 8.68670 9.09107 9.59065 11.06931 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034724 B = 0.004871 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.158783 B = 5746.640504 C = 6005.804226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.075 0.925 4 C 0.063 3.937 5 H 0.083 0.917 6 C -0.178 4.178 7 N -0.495 5.495 8 C 0.047 3.953 9 C 0.062 3.938 10 O -0.380 6.380 11 C 0.194 3.806 12 C -0.510 4.510 13 H 0.066 0.934 14 C 0.056 3.944 15 N -0.901 5.901 16 Si 0.907 3.093 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.042 3.958 21 C -0.093 4.093 22 H 0.083 0.917 23 C -0.143 4.143 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.002 0.998 35 H 0.002 0.998 36 H 0.263 0.737 37 H 0.087 0.913 38 H 0.038 0.962 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.785 11.579 1.773 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.093 0.907 4 C -0.046 4.046 5 H 0.102 0.898 6 C -0.236 4.236 7 N -0.219 5.219 8 C -0.081 4.081 9 C -0.016 4.016 10 O -0.299 6.299 11 C 0.120 3.880 12 C -0.549 4.549 13 H 0.084 0.916 14 C -0.145 4.145 15 N -0.541 5.541 16 Si 0.735 3.265 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.086 4.086 21 C -0.112 4.112 22 H 0.101 0.899 23 C -0.200 4.200 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.020 0.980 35 H 0.019 0.981 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.057 11.697 1.746 19.147 hybrid contribution -0.016 -0.521 -0.126 0.536 sum -15.074 11.176 1.620 18.835 Atomic orbital electron populations 1.22018 0.95226 1.01645 1.01246 1.22023 0.95410 0.99432 0.94505 0.90672 1.22522 0.92724 0.93936 0.95403 0.89847 1.22530 0.99167 1.01454 1.00429 1.64947 1.49522 1.05620 1.01782 1.22444 0.98026 0.90281 0.97378 1.22344 0.85972 0.95258 0.98051 1.87965 1.15901 1.44712 1.81328 1.20169 0.91683 0.84939 0.91245 1.21035 0.91338 1.03816 1.38677 0.91560 1.24941 0.99480 0.94777 0.95322 1.69959 1.35378 1.08477 1.40248 0.86406 0.83817 0.77874 0.78435 1.20039 1.21234 1.20015 1.23270 0.98233 0.96043 0.91055 1.22093 0.98769 0.95840 0.94505 0.89892 1.21830 0.98568 1.01432 0.98181 0.92731 0.92660 0.92480 0.92190 0.92112 0.92451 0.93386 0.90138 0.94632 0.94445 0.98007 0.98056 0.92715 0.89485 0.94403 0.92656 0.92612 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 6.74 37.16 0.25 -1.03 16 2 C -0.09 -1.03 3.52 -89.26 -0.31 -1.35 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.06 0.78 3.76 -66.64 -0.25 0.53 16 5 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 6 C -0.18 -1.86 6.65 37.16 0.25 -1.61 16 7 N -0.50 -7.88 5.33 -222.56 -1.19 -9.07 16 8 C 0.05 0.74 4.39 -3.82 -0.02 0.73 16 9 C 0.06 1.20 5.76 37.16 0.21 1.42 16 10 O -0.38 -9.56 10.27 -35.23 -0.36 -9.93 16 11 C 0.19 5.50 5.69 36.01 0.20 5.71 16 12 C -0.51 -15.48 9.43 -34.44 -0.32 -15.80 16 13 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 16 Si 0.91 22.35 29.54 -169.99 -5.02 17.33 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.04 0.62 4.52 -1.90 -0.01 0.61 16 21 C -0.09 -1.14 3.58 -88.76 -0.32 -1.45 16 22 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 23 C -0.14 -1.43 8.06 37.16 0.30 -1.13 16 24 H 0.05 0.44 6.80 -51.93 -0.35 0.09 16 25 H 0.05 0.45 6.99 -51.93 -0.36 0.08 16 26 H 0.06 0.53 5.96 -51.93 -0.31 0.22 16 27 H 0.06 0.64 6.71 -51.93 -0.35 0.29 16 28 H 0.06 0.54 6.80 -51.93 -0.35 0.19 16 29 H 0.06 0.60 6.22 -51.93 -0.32 0.28 16 30 H 0.05 0.65 5.66 -51.93 -0.29 0.35 16 31 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 32 H 0.04 0.67 6.52 -51.93 -0.34 0.34 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 35 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.09 1.52 7.56 -51.93 -0.39 1.12 16 38 H 0.04 0.52 7.90 -51.93 -0.41 0.11 16 39 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -31.73 309.90 -8.43 -40.16 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -7.15 Total: -4.56 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.11 Total: -11.84 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.45 Total: -35.83 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.36 Total: -9.93 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.73 -8.43 -40.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399693945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.403 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds