Wall clock time and date at job start Mon Mar 30 2020 03:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.27470 * 2 1 4 4 C 1.53998 * 110.30604 * 122.09083 * 2 1 3 5 5 H 1.09004 * 110.07629 * 239.57888 * 4 2 1 6 6 C 1.52996 * 109.91856 * 0.78817 * 4 2 1 7 7 N 1.47909 * 107.05552 * 120.14293 * 4 2 1 8 8 C 1.46894 * 110.99473 * 214.15223 * 7 4 2 9 9 C 1.53009 * 109.46764 * 170.00186 * 8 7 4 10 10 O 1.42899 * 109.47113 * 64.99856 * 9 8 7 11 11 C 1.42903 * 113.99629 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.46878 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.48531 * 105.81801 * 334.66718 * 7 4 2 21 21 C 1.54593 * 110.30786 * 237.80632 * 2 1 3 22 22 H 1.09004 * 110.72635 * 144.68340 * 21 2 1 23 23 C 1.52999 * 110.72627 * 21.57745 * 21 2 1 24 24 H 1.08997 * 109.46912 * 297.90615 * 1 2 3 25 25 H 1.09003 * 109.47168 * 57.90914 * 1 2 3 26 26 H 1.09000 * 109.47216 * 177.91053 * 1 2 3 27 27 H 1.08997 * 109.46873 * 179.04295 * 6 4 2 28 28 H 1.09000 * 109.47391 * 299.04229 * 6 4 2 29 29 H 1.08997 * 109.47138 * 59.04526 * 6 4 2 30 30 H 1.09000 * 109.47283 * 50.00135 * 8 7 4 31 31 H 1.09002 * 109.47562 * 289.99455 * 8 7 4 32 32 H 1.09007 * 109.46516 * 304.99789 * 9 8 7 33 33 H 1.09004 * 109.47113 * 185.00258 * 9 8 7 34 34 H 1.09002 * 109.47382 * 59.99956 * 11 10 9 35 35 H 1.09001 * 109.46938 * 299.99942 * 11 10 9 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.09001 * 110.66881 * 157.64442 * 20 7 4 38 38 H 1.09004 * 110.66906 * 280.76914 * 20 7 4 39 39 H 1.09000 * 109.47219 * 59.99738 * 23 21 2 40 40 H 1.09001 * 109.47477 * 179.97438 * 23 21 2 41 41 H 1.09005 * 109.47063 * 299.99831 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0645 -0.7673 1.2236 5 1 2.6805 -0.1102 1.8375 6 6 0.8964 -1.3089 2.0501 7 7 2.8809 -1.8885 0.7099 8 6 2.7668 -3.0653 1.5816 9 6 3.4143 -4.2712 0.8977 10 8 4.8174 -4.0412 0.7547 11 6 5.5206 -5.1131 0.1233 12 6 6.9835 -4.7648 0.0247 13 1 7.3405 -3.8197 0.4064 14 6 7.8663 -5.6533 -0.5519 15 7 7.4316 -6.8043 -1.0162 16 14 9.6797 -5.2218 -0.6735 17 1 10.2291 -5.0035 0.6888 18 1 10.4105 -6.3356 -1.3297 19 1 9.8412 -3.9833 -1.4767 20 6 2.3584 -2.1803 -0.6495 21 6 2.0666 -0.7724 -1.2269 22 1 2.9806 -0.3126 -1.6028 23 6 1.0065 -0.8437 -2.3279 24 1 -0.3633 0.4810 0.9081 25 1 -0.3634 0.5460 -0.8707 26 1 -0.3633 -1.0270 -0.0375 27 1 1.2828 -1.8648 2.9044 28 1 0.2853 -0.4784 2.4034 29 1 0.2891 -1.9696 1.4314 30 1 1.7144 -3.2766 1.7708 31 1 3.2735 -2.8682 2.5264 32 1 2.9673 -4.4141 -0.0862 33 1 3.2520 -5.1629 1.5034 34 1 5.1174 -5.2731 -0.8766 35 1 5.4021 -6.0224 0.7127 36 1 8.0526 -7.4292 -1.4222 37 1 3.1104 -2.6935 -1.2488 38 1 1.4433 -2.7697 -0.5917 39 1 0.7363 0.1657 -2.6380 40 1 1.4057 -1.3912 -3.1818 41 1 0.1224 -1.3561 -1.9484 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399693945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:56 Heat of formation + Delta-G solvation = -68.965191 kcal Electronic energy + Delta-G solvation = -18205.088886 eV Core-core repulsion = 15504.991505 eV Total energy + Delta-G solvation = -2700.097381 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.15523 -38.51741 -35.52441 -34.75217 -33.17299 -30.71497 -28.96168 -28.46065 -26.30306 -26.08085 -24.48350 -23.10997 -20.52770 -19.63514 -18.61140 -17.91850 -17.34059 -16.69952 -16.41375 -16.08831 -15.52674 -15.19272 -14.94748 -14.51465 -14.04366 -13.94938 -13.60159 -13.52337 -13.14465 -13.04935 -12.78476 -12.68154 -12.64787 -12.50458 -12.15606 -12.01965 -11.91767 -11.62875 -11.49123 -11.28576 -11.24966 -11.13195 -10.85344 -10.20738 -9.17714 -8.32423 -6.44796 1.38837 1.44171 1.52551 2.34736 3.01005 3.01938 3.24144 3.62295 3.65952 3.94451 4.17335 4.19344 4.24193 4.36479 4.42272 4.47171 4.57373 4.61311 4.63796 4.66234 4.69327 4.79596 4.84608 4.90362 4.96362 4.98633 5.09687 5.14020 5.16435 5.23417 5.29069 5.36796 5.44833 5.54416 5.60274 5.96131 6.07705 6.19678 6.55392 6.84128 7.27370 8.79872 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034724 B = 0.004871 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.158783 B = 5746.640504 C = 6005.804226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.081 0.919 4 C 0.059 3.941 5 H 0.077 0.923 6 C -0.172 4.172 7 N -0.528 5.528 8 C 0.057 3.943 9 C 0.053 3.947 10 O -0.396 6.396 11 C 0.210 3.790 12 C -0.548 4.548 13 H 0.059 0.941 14 C 0.007 3.993 15 N -0.931 5.931 16 Si 0.983 3.017 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.267 1.267 20 C 0.044 3.956 21 C -0.092 4.092 22 H 0.064 0.936 23 C -0.137 4.137 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.046 0.954 34 H -0.019 1.019 35 H -0.016 1.016 36 H 0.271 0.729 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.581 12.863 2.061 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 H 0.099 0.901 4 C -0.049 4.049 5 H 0.095 0.905 6 C -0.230 4.230 7 N -0.252 5.252 8 C -0.071 4.071 9 C -0.025 4.025 10 O -0.315 6.315 11 C 0.135 3.865 12 C -0.586 4.586 13 H 0.077 0.923 14 C -0.191 4.191 15 N -0.570 5.570 16 Si 0.806 3.194 17 H -0.190 1.190 18 H -0.197 1.197 19 H -0.191 1.191 20 C -0.084 4.084 21 C -0.111 4.111 22 H 0.083 0.917 23 C -0.194 4.194 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.064 0.936 34 H -0.001 1.001 35 H 0.001 0.999 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.883 12.989 2.043 20.620 hybrid contribution 0.176 -0.927 -0.208 0.967 sum -15.707 12.062 1.835 19.889 Atomic orbital electron populations 1.21984 0.93118 1.01933 1.02549 1.22014 0.97050 0.99078 0.92666 0.90076 1.22599 0.93134 0.92809 0.96324 0.90525 1.22465 0.98419 1.02219 0.99860 1.64852 1.51676 1.06388 1.02321 1.22363 0.99166 0.89034 0.96509 1.22697 0.83148 0.97768 0.98859 1.87920 1.19017 1.43715 1.80886 1.19786 0.91698 0.85097 0.89953 1.21342 0.92683 1.04192 1.40336 0.92302 1.25961 1.04853 0.94275 0.94014 1.70065 1.37517 1.09360 1.40087 0.85236 0.76986 0.78175 0.79013 1.18962 1.19726 1.19135 1.23167 0.97274 0.97549 0.90424 1.22070 0.98984 0.94174 0.95870 0.91728 1.21795 0.97992 1.02571 0.97044 0.91396 0.91461 0.92635 0.92536 0.89917 0.92150 0.90167 0.90673 0.94496 0.93583 1.00147 0.99868 0.92019 0.93433 0.93252 0.90900 0.93316 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 6.74 71.98 0.49 -1.52 16 2 C -0.09 -1.77 3.52 -9.91 -0.03 -1.80 16 3 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 4 C 0.06 1.40 3.76 45.06 0.17 1.57 16 5 H 0.08 1.89 8.14 -2.38 -0.02 1.88 16 6 C -0.17 -3.14 6.65 71.98 0.48 -2.66 16 7 N -0.53 -16.82 5.33 -858.06 -4.58 -21.40 16 8 C 0.06 1.80 4.39 86.31 0.38 2.18 16 9 C 0.05 2.09 5.76 71.99 0.41 2.51 16 10 O -0.40 -20.75 10.27 -148.98 -1.53 -22.28 16 11 C 0.21 12.44 5.69 71.24 0.41 12.84 16 12 C -0.55 -34.16 9.43 25.60 0.24 -33.92 16 13 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 14 C 0.01 0.44 5.46 84.66 0.46 0.90 16 15 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 16 Si 0.98 45.76 29.54 68.60 2.03 47.78 16 17 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 20 C 0.04 1.31 4.52 86.65 0.39 1.70 16 21 C -0.09 -2.19 3.58 -9.59 -0.03 -2.23 16 22 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 23 C -0.14 -2.52 8.06 71.98 0.58 -1.94 16 24 H 0.07 0.82 6.80 -2.39 -0.02 0.81 16 25 H 0.07 0.84 6.99 -2.39 -0.02 0.82 16 26 H 0.05 0.84 5.96 -2.39 -0.01 0.82 16 27 H 0.06 1.08 6.71 -2.39 -0.02 1.06 16 28 H 0.08 1.17 6.80 -2.39 -0.02 1.16 16 29 H 0.06 1.08 6.22 -2.39 -0.01 1.07 16 30 H 0.08 2.02 5.66 -2.39 -0.01 2.01 16 31 H 0.07 2.44 8.12 -2.39 -0.02 2.42 16 32 H 0.04 1.45 6.52 -2.38 -0.02 1.44 16 33 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 34 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 35 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 36 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.05 1.77 7.56 -2.39 -0.02 1.75 16 38 H 0.05 1.33 7.90 -2.38 -0.02 1.31 16 39 H 0.07 1.10 7.67 -2.39 -0.02 1.08 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.10 6.57 -2.38 -0.02 1.09 16 Total: -1.00 -69.57 309.90 1.12 -68.45 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 0.98 Total: 7.00 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 3.94 Total: -22.37 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -4.29 Total: -78.58 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -1.53 Total: -22.28 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.57 1.12 -68.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399693945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.514 kcal (2) G-P(sol) polarization free energy of solvation -69.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds