Wall clock time and date at job start Mon Mar 30 2020 03:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.50579 * 2 1 4 4 C 1.53126 * 109.50147 * 120.07927 * 2 1 3 5 5 C 1.53124 * 109.15878 * 177.59192 * 4 2 1 6 6 H 1.08993 * 109.49981 * 182.40384 * 5 4 2 7 7 O 1.42895 * 109.49869 * 62.28724 * 5 4 2 8 8 C 1.53035 * 109.27794 * 302.34791 * 5 4 2 9 9 N 1.46844 * 109.52494 * 59.18054 * 8 5 4 10 10 C 1.46897 * 111.00090 * 174.16001 * 9 8 5 11 11 C 1.53004 * 109.47166 * 294.20807 * 10 9 8 12 12 C 1.53001 * 109.47116 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47116 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47173 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00348 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00075 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00076 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00531 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46917 * 60.00173 * 18 16 14 20 20 H 1.48494 * 109.47680 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47123 * 300.00529 * 18 16 14 22 22 C 1.46854 * 111.19703 * 298.25280 * 9 8 5 23 23 H 1.09001 * 109.46617 * 299.92135 * 1 2 3 24 24 H 1.08993 * 109.46990 * 59.91570 * 1 2 3 25 25 H 1.09000 * 109.47147 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.52297 * 297.50139 * 4 2 1 27 27 H 1.08999 * 109.51925 * 57.69343 * 4 2 1 28 28 H 0.96702 * 113.99656 * 179.97438 * 7 5 4 29 29 H 1.09002 * 109.46466 * 299.16376 * 8 5 4 30 30 H 1.09002 * 109.46192 * 179.19659 * 8 5 4 31 31 H 1.09004 * 109.47402 * 54.20756 * 10 9 8 32 32 H 1.09003 * 109.47565 * 174.20990 * 10 9 8 33 33 H 1.08995 * 109.46996 * 299.99996 * 11 10 9 34 34 H 1.09003 * 109.46642 * 60.00221 * 11 10 9 35 35 H 1.08995 * 109.47303 * 299.99952 * 12 11 10 36 36 H 1.09004 * 109.47141 * 59.99842 * 12 11 10 37 37 H 1.09004 * 109.46918 * 300.00389 * 13 12 11 38 38 H 1.09003 * 109.46728 * 59.99815 * 13 12 11 39 39 H 0.96998 * 120.00176 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.46310 * 301.73015 * 22 9 8 41 41 H 1.09004 * 109.45830 * 181.75702 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5712 -0.7717 1.2110 6 1 3.9395 -1.3228 2.0762 7 8 4.0911 0.5591 1.2355 8 6 4.0229 -1.4731 -0.0719 9 7 3.5093 -0.7426 -1.2376 10 6 4.0372 -1.3068 -2.4870 11 6 5.5497 -1.0838 -2.5482 12 6 6.0996 -1.6719 -3.8492 13 6 7.6122 -1.4495 -3.9102 14 6 8.1539 -2.0294 -5.1913 15 1 7.4862 -2.5083 -5.8922 16 6 9.5019 -1.9476 -5.4692 17 7 10.3150 -1.3640 -4.6160 18 14 10.1734 -2.6657 -7.0574 19 1 9.5273 -1.9968 -8.2152 20 1 11.6414 -2.4499 -7.1166 21 1 9.8854 -4.1218 -7.1031 22 6 2.0409 -0.7239 -1.2478 23 1 -0.3632 0.5126 0.8907 24 1 -0.3633 0.5151 -0.8892 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7157 -0.1864 2.1399 27 1 1.6453 -1.7388 1.2695 28 1 5.0569 0.6045 1.2140 29 1 3.6374 -2.4926 -0.0835 30 1 5.1121 -1.4964 -0.1089 31 1 3.8259 -2.3756 -2.5209 32 1 3.5629 -0.8155 -3.3365 33 1 5.7610 -0.0150 -2.5144 34 1 6.0240 -1.5751 -1.6987 35 1 5.8883 -2.7407 -3.8827 36 1 5.6252 -1.1810 -4.6990 37 1 7.8239 -0.3807 -3.8765 38 1 8.0861 -1.9407 -3.0604 39 1 11.2634 -1.3068 -4.8113 40 1 1.6647 -1.7469 -1.2538 41 1 1.6906 -0.2030 -2.1389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401579418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:39 Heat of formation + Delta-G solvation = -80.081763 kcal Electronic energy + Delta-G solvation = -17639.596405 eV Core-core repulsion = 14939.016974 eV Total energy + Delta-G solvation = -2700.579431 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.62394 -36.23782 -35.17573 -33.69515 -31.97130 -30.50866 -28.47292 -26.74081 -25.22230 -23.12113 -22.30692 -20.67451 -19.96773 -19.71396 -16.93499 -16.18636 -15.97620 -15.28932 -15.03620 -14.51703 -14.46865 -14.31355 -13.69947 -13.25145 -12.75647 -12.59075 -12.34445 -12.24060 -12.08194 -11.73554 -11.61010 -11.42207 -11.01752 -10.87299 -10.72996 -10.54418 -10.46749 -10.44532 -10.18679 -9.78025 -9.57915 -9.22699 -8.98985 -8.31077 -8.16951 -5.96315 -3.98549 3.35068 3.39236 3.41833 3.86136 4.32747 4.48837 4.56922 4.70774 4.82603 4.94229 5.27341 5.28786 5.37914 5.39131 5.41993 5.46617 5.56292 5.59778 5.67182 5.68416 5.72165 5.89618 5.94014 5.97867 6.08583 6.17936 6.28417 6.36789 6.54848 6.84443 6.99707 7.12826 7.17884 7.30182 7.72312 7.73059 7.88752 8.04798 8.47768 9.08751 9.65165 11.15010 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.048826 B = 0.003790 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.328901 B = 7385.302580 C = 7756.886644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.087 0.913 4 C -0.108 4.108 5 C 0.109 3.891 6 H 0.055 0.945 7 O -0.554 6.554 8 C 0.019 3.981 9 N -0.528 5.528 10 C 0.056 3.944 11 C -0.112 4.112 12 C -0.110 4.110 13 C 0.022 3.978 14 C -0.521 4.521 15 H 0.053 0.947 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.061 3.939 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.378 0.622 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.013 0.987 39 H 0.260 0.740 40 H 0.027 0.973 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.331 0.814 11.866 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.106 0.894 4 C -0.146 4.146 5 C 0.050 3.950 6 H 0.072 0.928 7 O -0.359 6.359 8 C -0.110 4.110 9 N -0.252 5.252 10 C -0.071 4.071 11 C -0.150 4.150 12 C -0.148 4.148 13 C -0.015 4.015 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.067 4.067 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.225 0.775 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.624 1.486 11.941 21.340 hybrid contribution 0.827 -1.510 -1.000 1.991 sum -16.797 -0.023 10.941 20.046 Atomic orbital electron populations 1.21812 0.95309 1.01507 1.01800 1.21088 0.94464 1.01247 0.93675 0.89446 1.21648 0.93489 1.00641 0.98817 1.21780 0.94407 0.83976 0.94868 0.92754 1.86476 1.26024 1.26355 1.97057 1.22885 1.01310 0.95173 0.91597 1.61842 1.07180 1.54044 1.02122 1.22245 0.97212 0.96743 0.90921 1.21663 0.92352 1.01778 0.99206 1.21605 0.99698 0.98862 0.94618 1.19078 0.88693 0.97013 0.96707 1.21258 0.92776 1.37095 1.04789 0.92845 1.25031 0.97201 0.95485 0.96792 1.69958 1.03899 1.43940 1.35796 0.86670 0.77764 0.79609 0.84019 1.20244 1.21298 1.20304 1.22138 0.87784 0.98350 0.98449 0.92581 0.92537 0.93016 0.91304 0.91257 0.77519 0.94540 0.89726 0.95405 0.90999 0.91614 0.92815 0.93783 0.93458 0.96597 0.96820 0.92998 0.95488 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.20 37.16 0.34 -0.88 16 2 C -0.09 -0.90 2.73 -90.53 -0.25 -1.15 16 3 H 0.09 1.09 7.80 -51.93 -0.40 0.69 16 4 C -0.11 -1.07 5.01 -26.60 -0.13 -1.20 16 5 C 0.11 1.17 3.81 -26.65 -0.10 1.06 16 6 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 7 O -0.55 -6.61 12.65 -35.23 -0.45 -7.06 16 8 C 0.02 0.23 4.95 -3.84 -0.02 0.21 16 9 N -0.53 -7.11 4.54 -234.66 -1.07 -8.18 16 10 C 0.06 0.83 4.96 -3.82 -0.02 0.81 16 11 C -0.11 -1.96 5.14 -26.73 -0.14 -2.09 16 12 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 15 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 18 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 C 0.06 0.71 4.74 -3.83 -0.02 0.69 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.38 3.50 9.08 45.56 0.41 3.92 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.07 6.21 -51.93 -0.32 0.75 16 31 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.07 1.05 7.99 -51.93 -0.41 0.63 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.93 6.43 -51.93 -0.33 0.59 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.84 8.02 -51.93 -0.42 0.43 16 LS Contribution 322.12 15.07 4.85 4.85 Total: -1.00 -31.35 322.12 -8.90 -40.25 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.94 Total: -1.74 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -1.02 Total: -18.41 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: -0.33 Total: -34.84 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.45 Total: -7.06 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.35 -8.90 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401579418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.833 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds