Wall clock time and date at job start Mon Mar 30 2020 03:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.50579 * 2 1 4 4 C 1.53126 * 109.50147 * 120.07927 * 2 1 3 5 5 C 1.53124 * 109.15878 * 177.59192 * 4 2 1 6 6 H 1.08993 * 109.49981 * 182.40384 * 5 4 2 7 7 O 1.42895 * 109.49869 * 62.28724 * 5 4 2 8 8 C 1.53035 * 109.27794 * 302.34791 * 5 4 2 9 9 N 1.46844 * 109.52494 * 59.18054 * 8 5 4 10 10 C 1.46897 * 111.00090 * 174.16001 * 9 8 5 11 11 C 1.53004 * 109.47166 * 294.20807 * 10 9 8 12 12 C 1.53001 * 109.47116 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47116 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47173 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00348 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00075 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00076 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00531 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46917 * 60.00173 * 18 16 14 20 20 H 1.48494 * 109.47680 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47123 * 300.00529 * 18 16 14 22 22 C 1.46854 * 111.19703 * 298.25280 * 9 8 5 23 23 H 1.09001 * 109.46617 * 299.92135 * 1 2 3 24 24 H 1.08993 * 109.46990 * 59.91570 * 1 2 3 25 25 H 1.09000 * 109.47147 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.52297 * 297.50139 * 4 2 1 27 27 H 1.08999 * 109.51925 * 57.69343 * 4 2 1 28 28 H 0.96702 * 113.99656 * 179.97438 * 7 5 4 29 29 H 1.09002 * 109.46466 * 299.16376 * 8 5 4 30 30 H 1.09002 * 109.46192 * 179.19659 * 8 5 4 31 31 H 1.09004 * 109.47402 * 54.20756 * 10 9 8 32 32 H 1.09003 * 109.47565 * 174.20990 * 10 9 8 33 33 H 1.08995 * 109.46996 * 299.99996 * 11 10 9 34 34 H 1.09003 * 109.46642 * 60.00221 * 11 10 9 35 35 H 1.08995 * 109.47303 * 299.99952 * 12 11 10 36 36 H 1.09004 * 109.47141 * 59.99842 * 12 11 10 37 37 H 1.09004 * 109.46918 * 300.00389 * 13 12 11 38 38 H 1.09003 * 109.46728 * 59.99815 * 13 12 11 39 39 H 0.96998 * 120.00176 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.46310 * 301.73015 * 22 9 8 41 41 H 1.09004 * 109.45830 * 181.75702 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5712 -0.7717 1.2110 6 1 3.9395 -1.3228 2.0762 7 8 4.0911 0.5591 1.2355 8 6 4.0229 -1.4731 -0.0719 9 7 3.5093 -0.7426 -1.2376 10 6 4.0372 -1.3068 -2.4870 11 6 5.5497 -1.0838 -2.5482 12 6 6.0996 -1.6719 -3.8492 13 6 7.6122 -1.4495 -3.9102 14 6 8.1539 -2.0294 -5.1913 15 1 7.4862 -2.5083 -5.8922 16 6 9.5019 -1.9476 -5.4692 17 7 10.3150 -1.3640 -4.6160 18 14 10.1734 -2.6657 -7.0574 19 1 9.5273 -1.9968 -8.2152 20 1 11.6414 -2.4499 -7.1166 21 1 9.8854 -4.1218 -7.1031 22 6 2.0409 -0.7239 -1.2478 23 1 -0.3632 0.5126 0.8907 24 1 -0.3633 0.5151 -0.8892 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7157 -0.1864 2.1399 27 1 1.6453 -1.7388 1.2695 28 1 5.0569 0.6045 1.2140 29 1 3.6374 -2.4926 -0.0835 30 1 5.1121 -1.4964 -0.1089 31 1 3.8259 -2.3756 -2.5209 32 1 3.5629 -0.8155 -3.3365 33 1 5.7610 -0.0150 -2.5144 34 1 6.0240 -1.5751 -1.6987 35 1 5.8883 -2.7407 -3.8827 36 1 5.6252 -1.1810 -4.6990 37 1 7.8239 -0.3807 -3.8765 38 1 8.0861 -1.9407 -3.0604 39 1 11.2634 -1.3068 -4.8113 40 1 1.6647 -1.7469 -1.2538 41 1 1.6906 -0.2030 -2.1389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401579418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:39 Heat of formation + Delta-G solvation = -101.427981 kcal Electronic energy + Delta-G solvation = -17640.522047 eV Core-core repulsion = 14939.016974 eV Total energy + Delta-G solvation = -2701.505073 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54961 -37.39773 -36.36978 -35.28655 -33.74962 -31.43218 -30.14044 -27.54651 -26.85842 -24.58713 -23.26317 -22.20553 -21.42310 -20.60621 -18.42025 -17.84537 -16.99234 -16.49626 -16.35187 -16.12092 -15.53325 -15.35201 -14.83426 -14.47399 -14.24266 -13.83416 -13.61268 -13.45150 -13.21821 -12.97907 -12.82480 -12.79841 -12.54873 -12.33470 -12.21335 -12.03813 -11.71896 -11.54351 -11.41850 -11.33192 -11.16764 -10.90229 -10.61338 -10.54953 -9.19513 -8.19912 -6.31612 1.39353 1.42810 1.50800 2.40823 2.87044 3.12622 3.51958 3.74843 3.82774 4.00497 4.04888 4.14515 4.25841 4.44134 4.48912 4.52489 4.56202 4.68407 4.72502 4.76011 4.80809 4.85575 4.88709 4.93825 4.96889 5.07568 5.22364 5.26814 5.28368 5.35517 5.35586 5.53504 5.55442 5.77299 5.86430 6.14122 6.21252 6.26447 6.85648 6.95225 7.37685 8.91770 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.048826 B = 0.003790 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.328901 B = 7385.302580 C = 7756.886644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 H 0.063 0.937 4 C -0.108 4.108 5 C 0.108 3.892 6 H 0.073 0.927 7 O -0.571 6.571 8 C 0.018 3.982 9 N -0.541 5.541 10 C 0.066 3.934 11 C -0.100 4.100 12 C -0.097 4.097 13 C 0.025 3.975 14 C -0.547 4.547 15 H 0.060 0.940 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.266 1.266 22 C 0.060 3.940 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.386 0.614 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.050 0.950 37 H -0.011 1.011 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.035 0.965 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.672 -0.140 11.621 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 H 0.082 0.918 4 C -0.146 4.146 5 C 0.048 3.952 6 H 0.090 0.910 7 O -0.378 6.378 8 C -0.110 4.110 9 N -0.265 5.265 10 C -0.062 4.062 11 C -0.138 4.138 12 C -0.135 4.135 13 C -0.012 4.012 14 C -0.585 4.585 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.191 1.191 22 C -0.068 4.068 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.234 0.766 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.007 0.993 38 H 0.008 0.992 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.982 0.533 11.703 22.306 hybrid contribution 1.267 -1.183 -0.882 1.945 sum -17.714 -0.650 10.821 20.768 Atomic orbital electron populations 1.21767 0.93514 1.02303 1.02310 1.21029 0.95899 0.99700 0.93492 0.91849 1.21695 0.92795 1.01499 0.98599 1.21908 0.95112 0.83478 0.94653 0.90951 1.86452 1.26984 1.27328 1.97065 1.22927 1.00687 0.95621 0.91812 1.61801 1.08525 1.54373 1.01836 1.22031 0.94909 0.97180 0.92033 1.21466 0.94559 1.00554 0.97193 1.21408 0.95902 0.99504 0.96702 1.19000 0.92361 0.94731 0.95158 1.21721 0.93519 1.37457 1.05784 0.92218 1.26020 0.97562 0.95708 1.00697 1.70098 1.04325 1.45035 1.37982 0.85487 0.77063 0.79178 0.79242 1.19137 1.20753 1.19089 1.22201 0.86466 0.98975 0.99123 0.91824 0.92359 0.92020 0.90783 0.89739 0.76571 0.93871 0.90813 0.94879 0.90724 0.92849 0.92859 0.93213 0.93145 0.99305 0.99207 0.92751 0.94637 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.20 71.98 0.66 -1.39 16 2 C -0.08 -1.60 2.73 -10.74 -0.03 -1.63 16 3 H 0.06 1.54 7.80 -2.39 -0.02 1.53 16 4 C -0.11 -1.91 5.01 30.68 0.15 -1.75 16 5 C 0.11 2.14 3.81 30.65 0.12 2.26 16 6 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 7 O -0.57 -13.27 12.65 -148.98 -1.88 -15.15 16 8 C 0.02 0.41 4.95 86.33 0.43 0.84 16 9 N -0.54 -14.03 4.54 -896.34 -4.07 -18.10 16 10 C 0.07 1.89 4.96 86.31 0.43 2.31 16 11 C -0.10 -3.49 5.14 30.60 0.16 -3.33 16 12 C -0.10 -4.08 5.15 30.60 0.16 -3.93 16 13 C 0.02 1.34 4.97 29.85 0.15 1.49 16 14 C -0.55 -31.97 9.11 25.60 0.23 -31.74 16 15 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 16 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 17 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 18 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 C 0.06 1.30 4.74 86.32 0.41 1.71 16 23 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.39 7.10 9.08 -74.06 -0.67 6.43 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.83 6.21 -2.39 -0.01 1.82 16 31 H 0.03 0.91 8.12 -2.39 -0.02 0.89 16 32 H 0.07 2.08 7.99 -2.39 -0.02 2.06 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.85 6.43 -2.39 -0.02 1.84 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 37 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 1.56 8.02 -2.39 -0.02 1.54 16 Total: -1.00 -66.91 322.12 -0.02 -66.93 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.30 Total: 11.97 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 3.33 Total: -34.83 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -3.78 Total: -75.81 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -1.88 Total: -15.15 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.91 -0.02 -66.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401579418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.497 kcal (2) G-P(sol) polarization free energy of solvation -66.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds