Wall clock time and date at job start Mon Mar 30 2020 04:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00350 * 2 1 4 4 C 1.53004 * 109.46997 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47264 * 55.00166 * 4 3 2 6 6 C 1.53001 * 109.47137 * 294.99632 * 4 3 2 7 7 C 1.53007 * 109.46625 * 174.99881 * 4 3 2 8 8 N 1.46901 * 109.46722 * 183.82427 * 7 4 3 9 9 C 1.46849 * 111.00024 * 75.81435 * 8 7 4 10 10 C 1.53035 * 109.51757 * 185.84378 * 9 8 7 11 11 C 1.53117 * 109.27721 * 300.80384 * 10 9 8 12 12 C 1.50695 * 109.57823 * 177.60136 * 11 10 9 13 13 H 1.08003 * 120.00447 * 240.29813 * 12 11 10 14 14 C 1.37877 * 119.99995 * 60.29374 * 12 11 10 15 15 N 1.31517 * 119.99824 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00103 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47202 * 59.99905 * 16 14 12 18 18 H 1.48497 * 109.47033 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47090 * 299.99945 * 16 14 12 20 20 C 1.53125 * 109.15146 * 57.66638 * 11 10 9 21 21 C 1.46845 * 111.00024 * 200.02216 * 8 7 4 22 22 H 1.08995 * 109.47139 * 59.99660 * 1 2 3 23 23 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46642 * 299.99820 * 1 2 3 25 25 H 1.09000 * 109.46879 * 60.00111 * 3 2 1 26 26 H 1.08999 * 109.46851 * 299.99918 * 3 2 1 27 27 H 1.09000 * 109.47008 * 298.72184 * 6 4 3 28 28 H 1.08999 * 109.46862 * 58.71571 * 6 4 3 29 29 H 1.09001 * 109.47152 * 178.72419 * 6 4 3 30 30 H 1.09002 * 109.47235 * 63.82878 * 7 4 3 31 31 H 1.08994 * 109.47385 * 303.82728 * 7 4 3 32 32 H 1.09002 * 109.46027 * 305.85772 * 9 8 7 33 33 H 1.09001 * 109.46262 * 65.83214 * 9 8 7 34 34 H 1.08999 * 109.49961 * 60.75283 * 10 9 8 35 35 H 1.09001 * 109.50427 * 180.87353 * 10 9 8 36 36 H 1.09001 * 109.53486 * 297.76668 * 11 10 9 37 37 H 0.97000 * 119.99565 * 179.97438 * 15 14 12 38 38 H 1.09007 * 109.50277 * 182.39496 * 20 11 10 39 39 H 1.09001 * 109.53441 * 62.30700 * 20 11 10 40 40 H 1.09004 * 109.46198 * 294.17989 * 21 8 7 41 41 H 1.09003 * 109.46188 * 54.15346 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8508 0.5684 -0.8427 6 6 3.9963 0.5363 1.3064 7 6 4.1574 2.5768 -0.1264 8 7 5.6183 2.4540 -0.2191 9 6 6.0243 1.9967 -1.5543 10 6 7.5330 1.7410 -1.5703 11 6 8.2687 3.0340 -1.2078 12 6 9.7527 2.7753 -1.1640 13 1 10.3023 2.9373 -0.2485 14 6 10.4088 2.3317 -2.2926 15 7 9.7396 2.1348 -3.4075 16 14 12.2481 2.0104 -2.2381 17 1 12.5386 0.9678 -1.2212 18 1 12.7089 1.5447 -3.5708 19 1 12.9592 3.2637 -1.8792 20 6 7.7923 3.5150 0.1656 21 6 6.2761 3.7192 0.1315 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6887 1.8463 0.8900 26 1 1.6887 1.8463 -0.8900 27 1 3.7008 1.1640 2.1472 28 1 3.5352 -0.4462 1.4070 29 1 5.0810 0.4295 1.2964 30 1 3.8976 3.1713 0.7496 31 1 3.7761 3.0654 -1.0230 32 1 5.4969 1.0744 -1.7982 33 1 5.7777 2.7616 -2.2907 34 1 7.7785 0.9665 -0.8436 35 1 7.8366 1.4165 -2.5656 36 1 8.0540 3.7974 -1.9557 37 1 10.2012 1.8231 -4.2016 38 1 8.2812 4.4580 0.4107 39 1 8.0422 2.7689 0.9199 40 1 6.0282 4.4759 -0.6128 41 1 5.9319 4.0479 1.1122 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527105254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:05 Heat of formation + Delta-G solvation = -64.447609 kcal Electronic energy + Delta-G solvation = -18036.041603 eV Core-core repulsion = 15336.140119 eV Total energy + Delta-G solvation = -2699.901484 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.75474 -37.78674 -35.00272 -32.92655 -30.76370 -29.74471 -27.36717 -26.59763 -25.57026 -23.88802 -22.13435 -21.44635 -19.69975 -18.53146 -16.61524 -16.27491 -16.03675 -15.50306 -14.66774 -14.55114 -14.31604 -13.91888 -13.40307 -12.93589 -12.65652 -12.53404 -12.34449 -12.11786 -11.76110 -11.61515 -11.35360 -10.94446 -10.88717 -10.71270 -10.64503 -10.46132 -10.31589 -10.14748 -9.91699 -9.73965 -9.36597 -8.91256 -8.65422 -8.24867 -7.68628 -5.93045 -3.98296 3.35788 3.40190 3.43113 3.62725 4.48425 4.55648 4.92953 5.05191 5.16080 5.20868 5.28234 5.36970 5.41715 5.47558 5.56710 5.73303 5.77756 5.88968 5.96005 6.04836 6.17124 6.28028 6.32156 6.37304 6.43400 6.67193 6.68013 6.70529 6.90603 7.08028 7.13350 7.22501 7.49520 7.67276 7.75699 7.88350 8.10162 8.21064 8.53038 9.05212 9.65851 11.13096 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.045397 B = 0.004576 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.629599 B = 6116.841860 C = 6345.354922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.066 3.934 4 C -0.085 4.085 5 H 0.079 0.921 6 C -0.131 4.131 7 C 0.061 3.939 8 N -0.531 5.531 9 C 0.056 3.944 10 C -0.103 4.103 11 C 0.048 3.952 12 C -0.511 4.511 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.106 4.106 21 C 0.062 3.938 22 H 0.038 0.962 23 H 0.083 0.917 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.056 0.944 33 H 0.021 0.979 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.019 0.981 37 H 0.259 0.741 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.022 0.978 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.561 -0.805 6.074 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.011 4.011 4 C -0.104 4.104 5 H 0.098 0.902 6 C -0.188 4.188 7 C -0.068 4.068 8 N -0.256 5.256 9 C -0.071 4.071 10 C -0.142 4.142 11 C 0.030 3.970 12 C -0.549 4.549 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.144 4.144 21 C -0.066 4.066 22 H 0.057 0.943 23 H 0.102 0.898 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.062 0.938 35 H 0.109 0.891 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.257 -1.373 6.219 16.533 hybrid contribution 0.421 0.707 -0.687 1.072 sum -14.837 -0.666 5.532 15.848 Atomic orbital electron populations 1.22708 0.81553 1.02504 0.99720 1.87895 1.19174 1.28239 1.95342 1.22598 0.94469 0.84302 0.99688 1.21080 0.91211 0.97474 1.00597 0.90235 1.21615 1.02571 0.99470 0.95176 1.21996 0.89511 0.95296 0.99953 1.61891 1.04341 1.30009 1.29340 1.22320 0.99750 0.97980 0.87039 1.21650 0.89134 0.99962 1.03424 1.18675 0.94421 0.93296 0.90650 1.21182 0.93028 1.44185 0.96500 0.92838 1.24967 0.97945 0.95548 0.95541 1.69872 1.35454 1.46755 1.01075 0.86699 0.85915 0.78589 0.77010 1.20304 1.21395 1.20422 1.21676 0.91471 1.00057 1.01187 1.22119 0.96893 0.89245 0.98356 0.94301 0.89822 0.94320 0.93493 0.93684 0.93802 0.93099 0.91008 0.91548 0.95323 0.92532 0.96094 0.93821 0.89059 0.96247 0.93088 0.93291 0.92478 0.95969 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.88 10.22 -35.23 -0.36 -5.24 16 3 C 0.07 0.78 5.32 37.16 0.20 0.98 16 4 C -0.08 -1.16 2.68 -90.61 -0.24 -1.40 16 5 H 0.08 1.22 6.73 -51.93 -0.35 0.87 16 6 C -0.13 -1.80 8.97 37.16 0.33 -1.47 16 7 C 0.06 0.88 4.41 -3.82 -0.02 0.87 16 8 N -0.53 -9.44 4.01 -234.67 -0.94 -10.39 16 9 C 0.06 1.12 5.29 -3.83 -0.02 1.10 16 10 C -0.10 -2.47 5.12 -26.65 -0.14 -2.61 16 11 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 12 C -0.51 -14.18 8.56 -34.44 -0.29 -14.48 16 13 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 14 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 15 N -0.89 -25.66 11.38 55.43 0.63 -25.03 16 16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C -0.11 -2.25 5.32 -26.65 -0.14 -2.39 16 21 C 0.06 1.11 5.43 -3.84 -0.02 1.09 16 22 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 23 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.69 7.79 -51.93 -0.40 0.28 16 29 H 0.07 1.12 7.75 -51.93 -0.40 0.72 16 30 H 0.07 0.87 7.79 -51.93 -0.40 0.47 16 31 H 0.03 0.41 8.00 -51.93 -0.42 0.00 16 32 H 0.06 1.06 6.66 -51.93 -0.35 0.71 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 2.43 6.18 -51.93 -0.32 2.11 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.90 7.93 -51.93 -0.41 0.49 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -28.74 318.62 -8.08 -36.82 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -7.67 Total: -3.15 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 0.48 Total: -14.30 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.31 Total: -35.42 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.36 Total: -5.24 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.74 -8.08 -36.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527105254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.626 kcal (2) G-P(sol) polarization free energy of solvation -28.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds