Wall clock time and date at job start Mon Mar 30 2020 04:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00350 * 2 1 4 4 C 1.53004 * 109.46997 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47264 * 55.00166 * 4 3 2 6 6 C 1.53001 * 109.47137 * 294.99632 * 4 3 2 7 7 C 1.53007 * 109.46625 * 174.99881 * 4 3 2 8 8 N 1.46901 * 109.46722 * 183.82427 * 7 4 3 9 9 C 1.46849 * 111.00024 * 75.81435 * 8 7 4 10 10 C 1.53035 * 109.51757 * 185.84378 * 9 8 7 11 11 C 1.53117 * 109.27721 * 300.80384 * 10 9 8 12 12 C 1.50695 * 109.57823 * 177.60136 * 11 10 9 13 13 H 1.08003 * 120.00447 * 240.29813 * 12 11 10 14 14 C 1.37877 * 119.99995 * 60.29374 * 12 11 10 15 15 N 1.31517 * 119.99824 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00103 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47202 * 59.99905 * 16 14 12 18 18 H 1.48497 * 109.47033 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47090 * 299.99945 * 16 14 12 20 20 C 1.53125 * 109.15146 * 57.66638 * 11 10 9 21 21 C 1.46845 * 111.00024 * 200.02216 * 8 7 4 22 22 H 1.08995 * 109.47139 * 59.99660 * 1 2 3 23 23 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46642 * 299.99820 * 1 2 3 25 25 H 1.09000 * 109.46879 * 60.00111 * 3 2 1 26 26 H 1.08999 * 109.46851 * 299.99918 * 3 2 1 27 27 H 1.09000 * 109.47008 * 298.72184 * 6 4 3 28 28 H 1.08999 * 109.46862 * 58.71571 * 6 4 3 29 29 H 1.09001 * 109.47152 * 178.72419 * 6 4 3 30 30 H 1.09002 * 109.47235 * 63.82878 * 7 4 3 31 31 H 1.08994 * 109.47385 * 303.82728 * 7 4 3 32 32 H 1.09002 * 109.46027 * 305.85772 * 9 8 7 33 33 H 1.09001 * 109.46262 * 65.83214 * 9 8 7 34 34 H 1.08999 * 109.49961 * 60.75283 * 10 9 8 35 35 H 1.09001 * 109.50427 * 180.87353 * 10 9 8 36 36 H 1.09001 * 109.53486 * 297.76668 * 11 10 9 37 37 H 0.97000 * 119.99565 * 179.97438 * 15 14 12 38 38 H 1.09007 * 109.50277 * 182.39496 * 20 11 10 39 39 H 1.09001 * 109.53441 * 62.30700 * 20 11 10 40 40 H 1.09004 * 109.46198 * 294.17989 * 21 8 7 41 41 H 1.09003 * 109.46188 * 54.15346 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8508 0.5684 -0.8427 6 6 3.9963 0.5363 1.3064 7 6 4.1574 2.5768 -0.1264 8 7 5.6183 2.4540 -0.2191 9 6 6.0243 1.9967 -1.5543 10 6 7.5330 1.7410 -1.5703 11 6 8.2687 3.0340 -1.2078 12 6 9.7527 2.7753 -1.1640 13 1 10.3023 2.9373 -0.2485 14 6 10.4088 2.3317 -2.2926 15 7 9.7396 2.1348 -3.4075 16 14 12.2481 2.0104 -2.2381 17 1 12.5386 0.9678 -1.2212 18 1 12.7089 1.5447 -3.5708 19 1 12.9592 3.2637 -1.8792 20 6 7.7923 3.5150 0.1656 21 6 6.2761 3.7192 0.1315 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6887 1.8463 0.8900 26 1 1.6887 1.8463 -0.8900 27 1 3.7008 1.1640 2.1472 28 1 3.5352 -0.4462 1.4070 29 1 5.0810 0.4295 1.2964 30 1 3.8976 3.1713 0.7496 31 1 3.7761 3.0654 -1.0230 32 1 5.4969 1.0744 -1.7982 33 1 5.7777 2.7616 -2.2907 34 1 7.7785 0.9665 -0.8436 35 1 7.8366 1.4165 -2.5656 36 1 8.0540 3.7974 -1.9557 37 1 10.2012 1.8231 -4.2016 38 1 8.2812 4.4580 0.4107 39 1 8.0422 2.7689 0.9199 40 1 6.0282 4.4759 -0.6128 41 1 5.9319 4.0479 1.1122 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527105254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:04 Heat of formation + Delta-G solvation = -81.728333 kcal Electronic energy + Delta-G solvation = -18036.790951 eV Core-core repulsion = 15336.140119 eV Total energy + Delta-G solvation = -2700.650832 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10287 -38.88077 -36.45751 -34.63517 -32.50058 -31.44910 -28.32545 -28.04208 -26.76850 -25.31836 -23.80972 -23.07506 -20.85027 -20.31983 -18.43171 -17.52865 -16.91950 -16.77141 -16.37461 -15.84662 -15.64164 -15.23735 -14.88703 -14.47526 -14.35397 -14.08199 -13.72139 -13.32849 -13.05495 -12.90044 -12.79858 -12.59771 -12.41482 -12.39211 -12.00729 -11.85100 -11.81659 -11.69414 -11.51659 -11.26943 -10.78041 -10.61891 -10.55479 -10.35749 -9.12444 -8.06680 -6.20138 1.41916 1.43437 1.50927 2.44780 2.70975 3.19773 3.27899 3.90515 4.09475 4.16822 4.27133 4.35093 4.38520 4.50438 4.52420 4.55786 4.59151 4.63278 4.72530 4.78544 4.81478 4.87709 4.95109 4.99389 5.03188 5.13260 5.22579 5.26205 5.35311 5.41564 5.56165 5.59065 5.64656 6.02347 6.05482 6.27053 6.33583 6.40497 6.42610 6.91647 7.47555 8.97650 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.045397 B = 0.004576 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.629599 B = 6116.841860 C = 6345.354922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.071 3.929 4 C -0.082 4.082 5 H 0.057 0.943 6 C -0.124 4.124 7 C 0.064 3.936 8 N -0.537 5.537 9 C 0.070 3.930 10 C -0.094 4.094 11 C 0.044 3.956 12 C -0.535 4.535 13 H 0.051 0.949 14 C 0.012 3.988 15 N -0.918 5.918 16 Si 0.953 3.047 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.271 1.271 20 C -0.100 4.100 21 C 0.067 3.933 22 H 0.047 0.953 23 H 0.094 0.906 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.034 0.966 32 H 0.067 0.933 33 H 0.013 0.987 34 H 0.029 0.971 35 H 0.058 0.942 36 H -0.013 1.013 37 H 0.260 0.740 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.021 0.979 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.857 -0.402 7.358 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.006 4.006 4 C -0.102 4.102 5 H 0.076 0.924 6 C -0.182 4.182 7 C -0.064 4.064 8 N -0.261 5.261 9 C -0.058 4.058 10 C -0.132 4.132 11 C 0.026 3.974 12 C -0.573 4.573 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.558 5.558 16 Si 0.779 3.221 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.137 4.137 21 C -0.061 4.061 22 H 0.066 0.934 23 H 0.112 0.888 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.032 0.968 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.005 0.995 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.570 -0.965 7.516 18.221 hybrid contribution 0.792 0.568 -1.084 1.458 sum -15.778 -0.397 6.432 17.044 Atomic orbital electron populations 1.22904 0.79674 1.03644 1.00795 1.87851 1.21285 1.28738 1.95571 1.22524 0.92743 0.84397 1.00942 1.21019 0.92982 0.96544 0.99606 0.92421 1.21532 1.00949 0.99834 0.95849 1.22062 0.86865 0.96199 1.01282 1.61826 1.06794 1.30046 1.27469 1.22036 0.96853 0.98449 0.88438 1.21402 0.92126 0.98828 1.00871 1.18655 0.93683 0.92920 0.92178 1.21581 0.94704 1.44433 0.96568 0.93095 1.25750 1.02365 0.95328 0.95222 1.70017 1.37032 1.47181 1.01537 0.85692 0.80647 0.78658 0.77134 1.19735 1.20969 1.19666 1.21542 0.94158 0.99807 0.98235 1.22065 0.94521 0.89294 1.00172 0.93434 0.88799 0.92971 0.91714 0.92872 0.92287 0.93258 0.93272 0.89158 0.94742 0.91440 0.96848 0.95250 0.92328 0.99459 0.93137 0.92839 0.93072 0.96075 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -9.59 10.22 -148.98 -1.52 -11.11 16 3 C 0.07 1.47 5.32 71.98 0.38 1.85 16 4 C -0.08 -2.10 2.68 -10.79 -0.03 -2.13 16 5 H 0.06 1.72 6.73 -2.39 -0.02 1.70 16 6 C -0.12 -3.20 8.97 71.98 0.65 -2.56 16 7 C 0.06 1.67 4.41 86.31 0.38 2.05 16 8 N -0.54 -18.31 4.01 -896.36 -3.59 -21.90 16 9 C 0.07 2.80 5.29 86.32 0.46 3.26 16 10 C -0.09 -4.63 5.12 30.65 0.16 -4.47 16 11 C 0.04 2.28 2.16 -11.46 -0.02 2.26 16 12 C -0.53 -30.35 8.56 25.60 0.22 -30.13 16 13 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 14 C 0.01 0.66 5.31 84.65 0.45 1.11 16 15 N -0.92 -54.22 11.38 21.45 0.24 -53.97 16 16 Si 0.95 44.56 29.54 68.60 2.03 46.58 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 C -0.10 -4.19 5.32 30.65 0.16 -4.02 16 21 C 0.07 2.30 5.43 86.32 0.47 2.77 16 22 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.27 7.79 -2.39 -0.02 1.25 16 29 H 0.05 1.48 7.75 -2.39 -0.02 1.46 16 30 H 0.09 1.99 7.79 -2.39 -0.02 1.97 16 31 H 0.03 0.89 8.00 -2.39 -0.02 0.87 16 32 H 0.07 2.53 6.66 -2.39 -0.02 2.52 16 33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 3.26 6.18 -2.39 -0.01 3.24 16 36 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 41 H 0.09 2.54 7.93 -2.39 -0.02 2.52 16 Total: -1.00 -62.75 318.62 2.63 -60.12 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.95 Total: 8.66 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 4.52 Total: -28.38 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -3.35 Total: -75.87 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -1.52 Total: -11.11 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -62.75 2.63 -60.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527105254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.608 kcal (2) G-P(sol) polarization free energy of solvation -62.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds