Wall clock time and date at job start Mon Mar 30 2020 05:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42911 * 113.99984 * 2 1 4 4 C 1.52997 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46922 * 305.00331 * 4 3 2 6 6 C 1.53006 * 109.47164 * 65.00082 * 4 3 2 7 7 C 1.52997 * 109.47232 * 185.00182 * 4 3 2 8 8 N 1.46898 * 109.47386 * 175.00330 * 7 4 3 9 9 C 1.46901 * 111.00283 * 179.97438 * 8 7 4 10 10 H 1.09001 * 110.01173 * 325.70119 * 9 8 7 11 11 C 1.53877 * 110.02975 * 87.08930 * 9 8 7 12 12 C 1.54261 * 106.59852 * 119.28696 * 11 9 8 13 13 C 1.54898 * 104.19628 * 23.60921 * 12 11 9 14 14 H 1.08997 * 110.75376 * 80.55625 * 13 12 11 15 15 C 1.50700 * 110.75682 * 203.74422 * 13 12 11 16 16 H 1.08000 * 120.00039 * 118.53880 * 15 13 12 17 17 C 1.37877 * 119.99993 * 298.54553 * 15 13 12 18 18 N 1.31516 * 119.99816 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00102 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47060 * 59.99673 * 19 17 15 21 21 H 1.48501 * 109.47442 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47004 * 299.99727 * 19 17 15 23 23 C 1.54259 * 110.03246 * 204.30758 * 9 8 7 24 24 H 1.08999 * 109.46832 * 59.99448 * 1 2 3 25 25 H 1.09000 * 109.46968 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46858 * 300.00217 * 1 2 3 27 27 H 1.09000 * 109.46632 * 59.99996 * 3 2 1 28 28 H 1.08994 * 109.46951 * 300.00225 * 3 2 1 29 29 H 1.09001 * 109.47002 * 59.99738 * 6 4 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 6 4 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 6 4 3 32 32 H 1.09002 * 109.47196 * 295.00207 * 7 4 3 33 33 H 1.09004 * 109.46881 * 54.99722 * 7 4 3 34 34 H 1.00907 * 111.00007 * 303.95590 * 8 7 4 35 35 H 1.08998 * 110.02970 * 238.57140 * 11 9 8 36 36 H 1.08996 * 110.03535 * 0.02562 * 11 9 8 37 37 H 1.08995 * 110.48931 * 142.28395 * 12 11 9 38 38 H 1.08999 * 110.49074 * 264.93322 * 12 11 9 39 39 H 0.97001 * 119.99568 * 179.97438 * 18 17 15 40 40 H 1.09003 * 110.49093 * 335.77971 * 23 9 8 41 41 H 1.09000 * 110.48684 * 98.43006 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3056 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8507 0.5685 0.8427 6 6 3.9963 0.5365 -1.3065 7 6 4.1573 2.5770 0.1264 8 7 5.6160 2.4527 0.2474 9 6 6.2486 3.7729 0.3697 10 1 5.6992 4.5059 -0.2210 11 6 6.2842 4.2054 1.8460 12 6 7.7709 4.3826 2.2175 13 6 8.4724 4.6465 0.8619 14 1 8.3533 5.6876 0.5617 15 6 9.9316 4.2773 0.9348 16 1 10.3257 3.5040 0.2921 17 6 10.7635 4.9266 1.8222 18 7 10.2834 5.8678 2.6053 19 14 12.5725 4.4694 1.9121 20 1 13.2077 4.7006 0.5899 21 1 13.2444 5.3069 2.9379 22 1 12.7032 3.0367 2.2804 23 6 7.7144 3.7026 -0.1056 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.6809 1.1527 -2.1485 30 1 5.0828 0.4500 -1.3058 31 1 3.5533 -0.4554 -1.3960 32 1 3.9149 3.1645 -0.7591 33 1 3.7602 3.0736 1.0118 34 1 5.8652 1.8586 1.0240 35 1 5.7530 5.1488 1.9716 36 1 5.8326 3.4356 2.4717 37 1 7.8984 5.2346 2.8852 38 1 8.1600 3.4744 2.6779 39 1 10.8686 6.3243 3.2299 40 1 8.0946 2.6845 -0.0208 41 1 7.8001 4.0586 -1.1322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569307255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:27 Heat of formation + Delta-G solvation = -90.357626 kcal Electronic energy + Delta-G solvation = -17532.580662 eV Core-core repulsion = 14831.555636 eV Total energy + Delta-G solvation = -2701.025026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.74995 -38.94966 -36.72459 -34.69659 -32.87697 -29.80013 -28.59898 -28.10465 -26.84067 -25.72711 -24.45809 -21.50937 -21.05336 -20.54526 -18.36935 -17.46903 -16.93787 -16.66391 -16.57564 -16.18179 -15.51614 -15.44633 -14.95277 -14.44638 -14.08231 -13.98272 -13.48447 -13.26414 -13.13661 -12.93589 -12.69959 -12.56148 -12.41375 -12.29890 -12.03934 -11.81967 -11.57671 -11.54894 -11.47929 -11.32215 -10.90261 -10.78946 -10.57762 -10.43957 -9.18280 -8.09392 -6.19199 1.41998 1.43327 1.50884 2.44806 2.74629 3.20545 3.47686 3.91507 4.02327 4.07727 4.11627 4.23582 4.31600 4.49673 4.52016 4.55897 4.62064 4.72038 4.77994 4.83580 4.86957 4.88615 5.00677 5.08506 5.10676 5.17379 5.22012 5.27902 5.35377 5.46644 5.48294 5.53297 5.67717 5.95303 6.03493 6.23959 6.31409 6.42470 6.56499 6.91364 7.48022 8.98535 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.056788 B = 0.003818 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.940627 B = 7331.522721 C = 7537.754693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.068 3.932 4 C -0.083 4.083 5 H 0.069 0.931 6 C -0.128 4.128 7 C 0.069 3.931 8 N -0.681 5.681 9 C 0.098 3.902 10 H 0.077 0.923 11 C -0.142 4.142 12 C -0.090 4.090 13 C 0.037 3.963 14 H -0.002 1.002 15 C -0.531 4.531 16 H 0.051 0.949 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.952 3.048 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.271 1.271 23 C -0.093 4.093 24 H 0.049 0.951 25 H 0.095 0.905 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.341 0.659 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.029 0.971 39 H 0.259 0.741 40 H 0.054 0.946 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.158 -8.461 -4.326 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.009 4.009 4 C -0.102 4.102 5 H 0.087 0.913 6 C -0.186 4.186 7 C -0.061 4.061 8 N -0.311 5.311 9 C -0.012 4.012 10 H 0.095 0.905 11 C -0.181 4.181 12 C -0.129 4.129 13 C 0.018 3.982 14 H 0.016 0.984 15 C -0.569 4.569 16 H 0.069 0.931 17 C -0.188 4.188 18 N -0.560 5.560 19 Si 0.778 3.222 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.131 4.131 24 H 0.068 0.932 25 H 0.113 0.887 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.160 0.840 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.914 -8.550 -4.884 20.441 hybrid contribution 0.783 0.612 1.262 1.606 sum -17.131 -7.937 -3.622 19.224 Atomic orbital electron populations 1.22907 0.79722 1.03684 1.00744 1.87840 1.21215 1.28632 1.95569 1.22545 0.93074 0.84417 1.00855 1.21025 0.93005 0.96354 0.99809 0.91278 1.21587 1.01315 0.99831 0.95850 1.21908 0.87429 0.95984 1.00744 1.60569 1.08281 1.12507 1.49764 1.22065 0.94993 0.89978 0.94204 0.90515 1.22864 0.97133 1.00752 0.97334 1.22021 0.93206 0.98546 0.99109 1.19596 0.93217 0.93293 0.92091 0.98426 1.21504 0.95221 1.19836 1.20386 0.93065 1.25765 1.02617 0.94980 0.95410 1.70087 1.36690 1.25279 1.23902 0.85706 0.80422 0.78281 0.77823 1.19659 1.21043 1.19647 1.22279 0.93651 0.99383 0.97784 0.93225 0.88675 0.93376 0.92700 0.92325 0.92980 0.92560 0.93073 0.90703 0.94831 0.84024 0.92429 0.91780 0.94580 0.95225 0.93211 0.92704 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -8.46 10.24 -148.98 -1.53 -9.99 16 3 C 0.07 1.25 5.32 71.98 0.38 1.63 16 4 C -0.08 -1.74 2.77 -10.79 -0.03 -1.77 16 5 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 6 C -0.13 -2.83 8.98 71.98 0.65 -2.19 16 7 C 0.07 1.56 4.90 86.30 0.42 1.98 16 8 N -0.68 -19.30 5.66 -487.84 -2.76 -22.07 16 9 C 0.10 3.30 3.23 45.64 0.15 3.44 16 10 H 0.08 2.45 7.82 -2.39 -0.02 2.43 16 11 C -0.14 -5.10 6.40 31.32 0.20 -4.90 16 12 C -0.09 -4.29 5.57 31.67 0.18 -4.11 16 13 C 0.04 1.88 2.82 -10.22 -0.03 1.85 16 14 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 15 C -0.53 -30.01 8.54 25.60 0.22 -29.79 16 16 H 0.05 2.85 7.78 -2.91 -0.02 2.83 16 17 C 0.01 0.61 5.33 84.65 0.45 1.06 16 18 N -0.92 -54.44 12.02 21.45 0.26 -54.18 16 19 Si 0.95 44.49 29.54 68.60 2.03 46.52 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 C -0.09 -3.86 5.96 31.69 0.19 -3.67 16 24 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.39 7.75 -2.39 -0.02 1.37 16 31 H 0.05 1.13 7.82 -2.39 -0.02 1.11 16 32 H 0.07 1.65 8.07 -2.39 -0.02 1.63 16 33 H 0.03 0.74 8.12 -2.38 -0.02 0.72 16 34 H 0.34 9.68 8.18 -89.69 -0.73 8.95 16 35 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.06 2.05 7.58 -2.39 -0.02 2.03 16 37 H 0.04 1.89 7.37 -2.39 -0.02 1.87 16 38 H 0.03 1.45 8.04 -2.39 -0.02 1.43 16 39 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 40 H 0.05 2.35 7.95 -2.39 -0.02 2.33 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -61.63 325.81 2.25 -59.37 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.23 Total: 15.23 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 4.02 Total: -34.88 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -2.50 Total: -76.25 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -1.53 Total: -9.99 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -61.63 2.25 -59.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569307255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.984 kcal (2) G-P(sol) polarization free energy of solvation -61.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds