Wall clock time and date at job start Mon Mar 30 2020 04:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50698 * 109.46984 * 175.00062 * 4 2 1 6 6 H 1.08008 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00032 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99974 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47344 * 89.99767 * 9 7 5 11 11 H 1.48499 * 109.46707 * 209.99826 * 9 7 5 12 12 H 1.48500 * 109.47223 * 329.99502 * 9 7 5 13 13 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 14 14 C 1.46900 * 110.99890 * 274.99873 * 13 2 1 15 15 C 1.52996 * 109.47450 * 180.02562 * 14 13 2 16 16 O 1.42895 * 109.47420 * 64.99981 * 15 14 13 17 17 C 1.53005 * 109.46990 * 305.00010 * 15 14 13 18 18 C 1.52999 * 109.47323 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.46913 * 60.00031 * 18 17 15 20 20 C 1.52995 * 109.47006 * 300.00034 * 19 18 17 21 21 C 1.52999 * 109.47312 * 60.00211 * 20 19 18 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 26 26 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 27 27 H 0.96997 * 119.99784 * 180.02562 * 8 7 5 28 28 H 1.00898 * 111.00476 * 38.95263 * 13 2 1 29 29 H 1.09002 * 109.47391 * 300.00224 * 14 13 2 30 30 H 1.09005 * 109.47266 * 59.99895 * 14 13 2 31 31 H 0.96707 * 114.00082 * 300.00447 * 16 15 14 32 32 H 1.09000 * 109.47213 * 300.00238 * 17 15 14 33 33 H 1.09000 * 109.46777 * 59.99631 * 17 15 14 34 34 H 1.09001 * 109.46791 * 300.00110 * 18 17 15 35 35 H 1.08998 * 109.47464 * 180.02562 * 18 17 15 36 36 H 1.09005 * 109.46827 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.46912 * 60.00075 * 19 18 17 38 38 H 1.09000 * 109.47318 * 299.99793 * 20 19 18 39 39 H 1.09006 * 109.47109 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47464 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.46791 * 59.99767 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0791 -0.0862 -0.5390 7 6 4.2305 -1.1928 -2.3582 8 7 3.5765 -1.8371 -3.2999 9 14 6.0922 -1.0615 -2.4364 10 1 6.7000 -2.2147 -1.7252 11 1 6.5296 -1.0687 -3.8555 12 1 6.5269 0.2032 -1.7908 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2225 2.3469 15 6 2.5961 -0.5328 3.5742 16 8 3.9444 -0.9484 3.3480 17 6 1.7184 -1.7615 3.8211 18 6 2.2324 -2.5173 5.0480 19 6 2.1806 -1.5995 6.2711 20 6 3.0583 -0.3709 6.0242 21 6 2.5442 0.3849 4.7973 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7517 -1.7715 -1.2055 26 1 1.6055 -0.2618 -2.1369 27 1 4.0609 -2.2439 -4.0352 28 1 1.4495 -1.4979 1.4101 29 1 2.7588 1.0462 2.1183 30 1 1.0870 0.6163 2.5525 31 1 4.0529 -1.5342 2.5862 32 1 0.6899 -1.4446 3.9937 33 1 1.7556 -2.4156 2.9499 34 1 3.2608 -2.8343 4.8749 35 1 1.6074 -3.3929 5.2237 36 1 2.5472 -2.1378 7.1451 37 1 1.1521 -1.2825 6.4441 38 1 4.0867 -0.6878 5.8512 39 1 3.0217 0.2829 6.8957 40 1 3.1692 1.2605 4.6216 41 1 1.5158 0.7019 4.9704 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695775900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:58 Heat of formation + Delta-G solvation = -83.163727 kcal Electronic energy + Delta-G solvation = -18410.417538 eV Core-core repulsion = 15709.704463 eV Total energy + Delta-G solvation = -2700.713075 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.51125 -36.44598 -34.72117 -32.71613 -31.20790 -30.80810 -28.67208 -27.23683 -24.66814 -23.03276 -22.49961 -20.87540 -19.68150 -19.56983 -16.30231 -16.03928 -15.69906 -15.18946 -14.45506 -14.26154 -14.09079 -14.01292 -13.39380 -13.15013 -12.71479 -12.41383 -12.13760 -12.10662 -11.78493 -11.61825 -11.40183 -11.32555 -11.05910 -10.89726 -10.67552 -10.62615 -10.45360 -10.44011 -10.02429 -9.87813 -9.45782 -9.14131 -8.94911 -8.23393 -7.60786 -5.85825 -3.83449 3.41904 3.47716 3.52326 4.48998 4.59021 4.62265 4.79578 4.89524 4.97439 5.20700 5.37617 5.41353 5.50314 5.51861 5.55866 5.67313 5.72341 5.75468 5.83438 5.91385 6.01042 6.01908 6.03987 6.09767 6.22626 6.24011 6.33727 6.43548 6.45260 6.55359 6.62709 7.02583 7.54642 7.69101 8.00398 8.06614 8.16231 8.18871 8.62120 9.22355 9.78124 11.26263 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025966 B = 0.006207 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.060947 B = 4510.232580 C = 5088.053633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 H 0.063 0.937 4 C 0.033 3.967 5 C -0.487 4.487 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 N -0.665 5.665 14 C 0.033 3.967 15 C 0.143 3.857 16 O -0.556 6.556 17 C -0.148 4.148 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.104 4.104 22 H 0.036 0.964 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.257 0.743 28 H 0.329 0.671 29 H 0.075 0.925 30 H 0.023 0.977 31 H 0.388 0.612 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.280 1.583 16.605 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.020 4.020 3 H 0.082 0.918 4 C -0.004 4.004 5 C -0.526 4.526 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.296 5.296 14 C -0.098 4.098 15 C 0.102 3.898 16 O -0.364 6.364 17 C -0.186 4.186 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.142 4.142 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.148 0.852 29 H 0.094 0.906 30 H 0.041 0.959 31 H 0.238 0.762 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.475 1.947 16.791 17.486 hybrid contribution -0.168 -0.223 -0.507 0.579 sum -4.643 1.724 16.284 17.020 Atomic orbital electron populations 1.22547 0.99585 1.01121 1.00597 1.21782 0.89811 0.98191 0.92179 0.91821 1.19110 0.96295 0.95297 0.89708 1.21149 0.91831 1.32814 1.06792 0.92299 1.25009 0.97975 0.95952 0.96025 1.69968 1.35164 1.37050 1.12403 0.86627 0.86461 0.78345 0.76693 1.20891 1.21704 1.20094 1.60566 1.57722 1.08698 1.02609 1.22674 0.98874 0.96666 0.91543 1.21033 0.82996 0.92724 0.93092 1.86353 1.25771 1.70515 1.53738 1.22234 0.99360 0.98124 0.98893 1.21427 1.01909 0.97474 0.94315 1.21530 0.99622 0.96641 0.97738 1.21432 1.00503 0.96444 0.96789 1.21476 1.01124 0.97938 0.93687 0.94484 0.92458 0.93102 0.96589 0.96547 0.93380 0.85191 0.90638 0.95869 0.76211 0.91919 0.90792 0.91208 0.92586 0.92444 0.92576 0.90993 0.92655 0.91435 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 9.16 37.16 0.34 -2.65 16 2 C 0.09 1.78 2.53 -67.71 -0.17 1.61 16 3 H 0.06 1.32 7.80 -51.93 -0.40 0.92 16 4 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 5 C -0.49 -13.65 8.84 -34.44 -0.30 -13.95 16 6 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 9 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.66 -11.79 5.48 -106.72 -0.59 -12.38 16 14 C 0.03 0.50 4.73 -3.83 -0.02 0.48 16 15 C 0.14 1.94 0.79 -90.62 -0.07 1.87 16 16 O -0.56 -8.76 11.63 -35.23 -0.41 -9.17 16 17 C -0.15 -1.80 4.46 -26.73 -0.12 -1.92 16 18 C -0.11 -1.27 5.78 -26.73 -0.15 -1.43 16 19 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 20 C -0.11 -1.26 5.78 -26.73 -0.15 -1.42 16 21 C -0.10 -1.25 4.95 -26.73 -0.13 -1.38 16 22 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.83 8.13 -51.93 -0.42 0.40 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.33 5.45 6.36 -39.29 -0.25 5.20 16 29 H 0.08 1.28 8.06 -51.93 -0.42 0.86 16 30 H 0.02 0.33 7.44 -51.93 -0.39 -0.05 16 31 H 0.39 6.20 8.66 45.56 0.39 6.59 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.96 6.51 -51.93 -0.34 0.62 16 34 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 317.54 15.07 4.79 4.79 Total: -1.00 -29.73 317.54 -8.44 -38.17 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.78 Total: 6.17 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -1.17 Total: -18.10 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.15 Total: -39.08 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.41 Total: -9.17 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.73 -8.44 -38.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695775900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.990 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds