Wall clock time and date at job start Mon Mar 30 2020 04:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50698 * 109.46984 * 175.00062 * 4 2 1 6 6 H 1.08008 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00032 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99974 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47344 * 89.99767 * 9 7 5 11 11 H 1.48499 * 109.46707 * 209.99826 * 9 7 5 12 12 H 1.48500 * 109.47223 * 329.99502 * 9 7 5 13 13 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 14 14 C 1.46900 * 110.99890 * 274.99873 * 13 2 1 15 15 C 1.52996 * 109.47450 * 180.02562 * 14 13 2 16 16 O 1.42895 * 109.47420 * 64.99981 * 15 14 13 17 17 C 1.53005 * 109.46990 * 305.00010 * 15 14 13 18 18 C 1.52999 * 109.47323 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.46913 * 60.00031 * 18 17 15 20 20 C 1.52995 * 109.47006 * 300.00034 * 19 18 17 21 21 C 1.52999 * 109.47312 * 60.00211 * 20 19 18 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 26 26 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 27 27 H 0.96997 * 119.99784 * 180.02562 * 8 7 5 28 28 H 1.00898 * 111.00476 * 38.95263 * 13 2 1 29 29 H 1.09002 * 109.47391 * 300.00224 * 14 13 2 30 30 H 1.09005 * 109.47266 * 59.99895 * 14 13 2 31 31 H 0.96707 * 114.00082 * 300.00447 * 16 15 14 32 32 H 1.09000 * 109.47213 * 300.00238 * 17 15 14 33 33 H 1.09000 * 109.46777 * 59.99631 * 17 15 14 34 34 H 1.09001 * 109.46791 * 300.00110 * 18 17 15 35 35 H 1.08998 * 109.47464 * 180.02562 * 18 17 15 36 36 H 1.09005 * 109.46827 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.46912 * 60.00075 * 19 18 17 38 38 H 1.09000 * 109.47318 * 299.99793 * 20 19 18 39 39 H 1.09006 * 109.47109 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47464 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.46791 * 59.99767 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0791 -0.0862 -0.5390 7 6 4.2305 -1.1928 -2.3582 8 7 3.5765 -1.8371 -3.2999 9 14 6.0922 -1.0615 -2.4364 10 1 6.7000 -2.2147 -1.7252 11 1 6.5296 -1.0687 -3.8555 12 1 6.5269 0.2032 -1.7908 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2225 2.3469 15 6 2.5961 -0.5328 3.5742 16 8 3.9444 -0.9484 3.3480 17 6 1.7184 -1.7615 3.8211 18 6 2.2324 -2.5173 5.0480 19 6 2.1806 -1.5995 6.2711 20 6 3.0583 -0.3709 6.0242 21 6 2.5442 0.3849 4.7973 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7517 -1.7715 -1.2055 26 1 1.6055 -0.2618 -2.1369 27 1 4.0609 -2.2439 -4.0352 28 1 1.4495 -1.4979 1.4101 29 1 2.7588 1.0462 2.1183 30 1 1.0870 0.6163 2.5525 31 1 4.0529 -1.5342 2.5862 32 1 0.6899 -1.4446 3.9937 33 1 1.7556 -2.4156 2.9499 34 1 3.2608 -2.8343 4.8749 35 1 1.6074 -3.3929 5.2237 36 1 2.5472 -2.1378 7.1451 37 1 1.1521 -1.2825 6.4441 38 1 4.0867 -0.6878 5.8512 39 1 3.0217 0.2829 6.8957 40 1 3.1692 1.2605 4.6216 41 1 1.5158 0.7019 4.9704 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695775900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:58 Heat of formation + Delta-G solvation = -103.009159 kcal Electronic energy + Delta-G solvation = -18411.278101 eV Core-core repulsion = 15709.704463 eV Total energy + Delta-G solvation = -2701.573638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.59189 -37.91530 -35.84444 -34.75607 -32.67405 -31.73292 -29.98889 -29.03665 -25.90923 -24.88138 -23.55061 -21.91626 -21.33034 -20.56805 -18.37907 -17.29210 -16.85084 -16.53233 -16.35308 -15.59694 -15.22452 -15.12728 -14.67697 -14.31540 -14.15220 -13.78618 -13.56164 -13.36737 -13.20935 -13.04694 -12.87055 -12.62545 -12.47597 -12.42663 -12.30085 -11.99519 -11.79661 -11.59996 -11.33090 -11.30657 -11.09322 -10.74310 -10.47900 -10.42343 -9.02482 -8.08688 -6.13020 1.42450 1.43358 1.53937 2.48242 3.21850 3.34014 3.47524 3.83256 3.91050 3.96270 4.22881 4.25691 4.39397 4.41949 4.48380 4.56651 4.58948 4.64101 4.66399 4.79276 4.88865 4.95482 5.01310 5.10349 5.15282 5.22331 5.26973 5.32882 5.34662 5.39867 5.46557 5.53277 5.63181 5.69285 5.91523 6.31838 6.47508 6.71967 6.95136 7.01258 7.52721 9.03413 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025966 B = 0.006207 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.060947 B = 4510.232580 C = 5088.053633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 H 0.054 0.946 4 C 0.038 3.962 5 C -0.495 4.495 6 H 0.055 0.945 7 C -0.005 4.005 8 N -0.941 5.941 9 Si 0.956 3.044 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.677 5.677 14 C 0.039 3.961 15 C 0.141 3.859 16 O -0.570 6.570 17 C -0.144 4.144 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.105 4.105 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.054 0.946 25 H -0.008 1.008 26 H -0.010 1.010 27 H 0.258 0.742 28 H 0.337 0.663 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.383 0.617 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.776 1.958 18.560 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 H 0.072 0.928 4 C 0.001 3.999 5 C -0.534 4.534 6 H 0.073 0.927 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.782 3.218 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.309 5.309 14 C -0.091 4.091 15 C 0.100 3.900 16 O -0.377 6.377 17 C -0.181 4.181 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.142 4.142 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.011 0.989 26 H 0.008 0.992 27 H 0.067 0.933 28 H 0.157 0.843 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.232 0.768 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.976 2.329 18.770 19.558 hybrid contribution -0.027 -0.330 -1.109 1.158 sum -5.003 1.999 17.661 18.464 Atomic orbital electron populations 1.22402 0.96693 1.01807 1.01898 1.21437 0.92073 0.96704 0.90841 0.92809 1.18990 0.95097 0.94228 0.91606 1.21458 0.93335 1.32154 1.06422 0.92683 1.25829 1.02676 0.95772 0.95806 1.70091 1.36981 1.38124 1.13095 0.85586 0.80891 0.78537 0.76771 1.20241 1.21301 1.19481 1.60360 1.58239 1.09459 1.02865 1.22639 0.99483 0.95798 0.91147 1.21203 0.82229 0.93580 0.92977 1.86357 1.27454 1.70461 1.53447 1.22180 0.99793 0.97218 0.98957 1.21421 1.01090 0.98131 0.94416 1.21525 1.00249 0.95973 0.97465 1.21414 0.99466 0.97128 0.96970 1.21524 1.02247 0.97280 0.93193 0.91682 0.92621 0.92728 0.98933 0.99182 0.93324 0.84281 0.92677 0.93891 0.76785 0.90399 0.91959 0.92888 0.91329 0.91374 0.91153 0.93048 0.90891 0.92305 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.37 9.16 71.98 0.66 -4.71 16 2 C 0.10 3.93 2.53 44.92 0.11 4.04 16 3 H 0.05 2.23 7.80 -2.39 -0.02 2.21 16 4 C 0.04 1.99 4.65 29.85 0.14 2.12 16 5 C -0.50 -28.20 8.84 25.60 0.23 -27.97 16 6 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 7 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 8 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 9 Si 0.96 46.09 29.54 68.60 2.03 48.12 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 N -0.68 -23.65 5.48 -491.56 -2.70 -26.35 16 14 C 0.04 1.14 4.73 86.30 0.41 1.55 16 15 C 0.14 3.64 0.79 -10.79 -0.01 3.63 16 16 O -0.57 -17.89 11.63 -148.98 -1.73 -19.63 16 17 C -0.14 -3.21 4.46 30.60 0.14 -3.08 16 18 C -0.11 -2.31 5.78 30.60 0.18 -2.13 16 19 C -0.11 -2.01 5.92 30.59 0.18 -1.83 16 20 C -0.11 -2.23 5.78 30.59 0.18 -2.05 16 21 C -0.10 -2.28 4.95 30.59 0.15 -2.13 16 22 H 0.06 1.71 7.45 -2.39 -0.02 1.69 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 25 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 27 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.34 10.86 6.36 -89.70 -0.57 10.29 16 29 H 0.05 1.84 8.06 -2.39 -0.02 1.82 16 30 H 0.04 1.10 7.44 -2.38 -0.02 1.08 16 31 H 0.38 12.45 8.66 -74.05 -0.64 11.81 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.54 6.51 -2.39 -0.02 1.52 16 34 H 0.05 1.26 7.68 -2.39 -0.02 1.24 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.06 8.14 -2.38 -0.02 1.05 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 38 H 0.05 1.23 7.68 -2.39 -0.02 1.21 16 39 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -64.04 317.54 0.48 -63.56 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.22 Total: 24.47 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 2.82 Total: -32.38 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -2.41 Total: -84.13 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -1.73 Total: -19.63 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -64.04 0.48 -63.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695775900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.454 kcal (2) G-P(sol) polarization free energy of solvation -64.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds