Wall clock time and date at job start Mon Mar 30 2020 04:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50698 * 109.47721 * 175.00208 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46910 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47081 * 119.99681 * 9 7 5 12 12 H 1.48493 * 109.47178 * 239.99915 * 9 7 5 13 13 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 14 14 C 1.46903 * 110.99908 * 274.99684 * 13 2 1 15 15 C 1.52996 * 109.47400 * 179.97438 * 14 13 2 16 16 H 1.09007 * 109.47030 * 55.00080 * 15 14 13 17 17 C 1.53003 * 109.47138 * 295.00162 * 15 14 13 18 18 C 1.53006 * 109.46835 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.46899 * 60.00304 * 18 17 15 20 20 C 1.52994 * 109.46995 * 299.99400 * 19 18 17 21 21 H 1.09007 * 109.47255 * 300.00311 * 20 19 18 22 22 O 1.42898 * 109.47074 * 180.02562 * 20 19 18 23 23 C 1.53000 * 109.47413 * 60.00454 * 20 19 18 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 28 28 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 29 29 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 30 30 H 1.00894 * 111.00396 * 38.94794 * 13 2 1 31 31 H 1.09003 * 109.46856 * 300.00136 * 14 13 2 32 32 H 1.09001 * 109.47072 * 60.00127 * 14 13 2 33 33 H 1.08994 * 109.47076 * 299.99513 * 17 15 14 34 34 H 1.08996 * 109.47050 * 60.00114 * 17 15 14 35 35 H 1.08994 * 109.47112 * 299.99762 * 18 17 15 36 36 H 1.09001 * 109.46644 * 179.97438 * 18 17 15 37 37 H 1.09005 * 109.46798 * 179.97438 * 19 18 17 38 38 H 1.08994 * 109.47682 * 59.99806 * 19 18 17 39 39 H 0.96698 * 114.00012 * 60.00272 * 22 20 19 40 40 H 1.08997 * 109.47341 * 179.97438 * 23 20 19 41 41 H 1.08997 * 109.47197 * 59.99712 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3128 6 1 4.0790 -0.0863 -0.5392 7 6 4.2303 -1.1928 -2.3583 8 7 3.5762 -1.8371 -3.3000 9 14 6.0919 -1.0605 -2.4374 10 1 6.5835 -0.2902 -1.2669 11 1 6.6861 -2.4214 -2.4200 12 1 6.4859 -0.3643 -3.6885 13 7 2.0196 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5950 -0.5332 3.5744 16 1 3.5507 -1.0021 3.3396 17 6 1.5823 -1.6097 3.9702 18 6 2.0952 -2.3658 5.1975 19 6 2.2795 -1.3873 6.3591 20 6 3.2922 -0.3109 5.9634 21 1 4.2477 -0.7798 5.7282 22 8 3.4648 0.6027 7.0485 23 6 2.7794 0.4453 4.7361 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.7516 -1.7715 -1.2056 28 1 1.6053 -0.2617 -2.1370 29 1 4.0606 -2.2439 -4.0354 30 1 1.4495 -1.4979 1.4100 31 1 2.7589 1.0461 2.1181 32 1 1.0871 0.6163 2.5525 33 1 0.6268 -1.1408 4.2050 34 1 1.4513 -2.3070 3.1428 35 1 3.0506 -2.8347 4.9622 36 1 1.3735 -3.1324 5.4797 37 1 2.6445 -1.9260 7.2336 38 1 1.3241 -0.9184 6.5943 39 1 3.7888 0.1913 7.8614 40 1 3.5007 1.2125 4.4545 41 1 1.8240 0.9142 4.9713 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695778661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:58 Heat of formation + Delta-G solvation = -87.222147 kcal Electronic energy + Delta-G solvation = -17894.117477 eV Core-core repulsion = 15193.228416 eV Total energy + Delta-G solvation = -2700.889062 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.30075 -36.94093 -35.46126 -32.86075 -31.77647 -29.95271 -28.64135 -27.19624 -24.61057 -22.91498 -22.42649 -20.99706 -19.84552 -19.54284 -17.18560 -16.19240 -15.60379 -15.16084 -14.65309 -14.41716 -14.37728 -13.93051 -13.67625 -13.13296 -12.72108 -12.64409 -12.26972 -12.10364 -11.73646 -11.68042 -11.39947 -11.20435 -11.08065 -10.93825 -10.70265 -10.54308 -10.42518 -10.37420 -10.10673 -9.99069 -9.78766 -9.20515 -8.91356 -8.21641 -7.49186 -5.83732 -3.80831 3.40876 3.48040 3.53638 4.00262 4.60470 4.60612 4.62968 4.85933 4.98286 5.11448 5.17158 5.38856 5.42833 5.44344 5.49541 5.54133 5.71419 5.77873 5.83810 5.90047 5.94941 5.99992 6.06689 6.07247 6.15483 6.17192 6.25259 6.42733 6.46621 6.61603 6.67903 7.08314 7.49638 7.62434 7.74749 8.08472 8.12362 8.23981 8.65634 9.24857 9.80296 11.28539 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024458 B = 0.005294 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.561497 B = 5287.914952 C = 5867.286796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 H 0.063 0.937 4 C 0.032 3.968 5 C -0.485 4.485 6 H 0.058 0.942 7 C 0.048 3.952 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.664 5.664 14 C 0.067 3.933 15 C -0.083 4.083 16 H 0.083 0.917 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.149 4.149 20 C 0.104 3.896 21 H 0.055 0.945 22 O -0.571 6.571 23 C -0.105 4.105 24 H 0.036 0.964 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.256 0.744 30 H 0.329 0.671 31 H 0.068 0.932 32 H 0.017 0.983 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.374 0.626 40 H 0.069 0.931 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.080 1.058 18.541 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.021 4.021 3 H 0.081 0.919 4 C -0.005 4.005 5 C -0.523 4.523 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.294 5.294 14 C -0.063 4.063 15 C -0.102 4.102 16 H 0.102 0.898 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.187 4.187 20 C 0.046 3.954 21 H 0.073 0.927 22 O -0.376 6.376 23 C -0.143 4.143 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.148 0.852 31 H 0.087 0.913 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.220 0.780 40 H 0.088 0.912 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.596 1.480 17.758 18.179 hybrid contribution 0.237 -0.374 0.497 0.665 sum -3.359 1.106 18.255 18.594 Atomic orbital electron populations 1.22552 0.99657 1.01091 1.00553 1.21787 0.89792 0.98162 0.92356 0.91861 1.19120 0.96244 0.95356 0.89776 1.21194 0.91931 1.32580 1.06638 0.92332 1.25006 0.97944 0.96006 0.96083 1.69982 1.35018 1.37213 1.12426 0.86585 0.86575 0.77517 0.77579 1.19871 1.21343 1.21456 1.60565 1.57713 1.08615 1.02525 1.21935 0.98294 0.95742 0.90351 1.21124 1.00216 0.95424 0.93393 0.89845 1.21638 0.98394 0.97945 0.97574 1.21467 1.01637 0.97484 0.94782 1.22259 1.00559 0.97433 0.98466 1.21846 0.97072 0.89353 0.87145 0.92657 1.86522 1.89391 1.38366 1.23326 1.21480 1.01779 0.98229 0.92801 0.94454 0.92547 0.93125 0.96564 0.96547 0.93465 0.85230 0.91347 0.96448 0.92381 0.91044 0.91639 0.91918 0.92193 0.91397 0.77956 0.91215 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 9.16 37.16 0.34 -2.73 16 2 C 0.09 1.81 2.53 -67.72 -0.17 1.63 16 3 H 0.06 1.33 7.80 -51.93 -0.40 0.93 16 4 C 0.03 0.84 4.65 -27.89 -0.13 0.71 16 5 C -0.48 -13.84 8.84 -34.44 -0.30 -14.15 16 6 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.91 -27.74 13.29 55.43 0.74 -27.00 16 9 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 N -0.66 -12.32 5.96 -106.73 -0.64 -12.96 16 14 C 0.07 1.03 4.94 -3.82 -0.02 1.01 16 15 C -0.08 -1.09 2.40 -90.62 -0.22 -1.30 16 16 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 17 C -0.12 -1.37 4.98 -26.73 -0.13 -1.50 16 18 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 19 C -0.15 -1.39 5.54 -26.73 -0.15 -1.54 16 20 C 0.10 1.12 3.47 -26.73 -0.09 1.02 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 22 O -0.57 -6.12 13.32 -35.23 -0.47 -6.59 16 23 C -0.10 -1.27 4.86 -26.73 -0.13 -1.40 16 24 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.33 5.69 6.72 -39.29 -0.26 5.43 16 31 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 32 H 0.02 0.26 7.44 -51.93 -0.39 -0.13 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.88 6.68 -51.93 -0.35 0.54 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.37 2.35 9.08 45.56 0.41 2.76 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 321.29 15.07 4.84 4.84 Total: -1.00 -31.42 321.29 -8.64 -40.06 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.83 Total: 2.52 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -1.26 Total: -18.23 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.10 Total: -39.96 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.47 Total: -6.59 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.42 -8.64 -40.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695778661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.159 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds