Wall clock time and date at job start Mon Mar 30 2020 04:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46642 * 2 1 4 4 C 1.52999 * 109.46984 * 240.00139 * 2 1 3 5 5 C 1.50706 * 109.46573 * 175.00011 * 4 2 1 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 2 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47405 * 60.00219 * 9 7 5 11 11 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 13 13 N 1.46901 * 109.47052 * 119.99792 * 2 1 3 14 14 C 1.46897 * 110.99894 * 275.00562 * 13 2 1 15 15 H 1.08997 * 108.85980 * 34.99664 * 14 13 2 16 16 C 1.54065 * 108.87290 * 276.43787 * 14 13 2 17 17 C 1.54012 * 112.85508 * 197.40955 * 16 14 13 18 18 C 1.50468 * 112.54683 * 318.44561 * 17 16 14 19 19 C 1.54242 * 108.53084 * 94.06365 * 18 17 16 20 20 C 1.45540 * 112.40763 * 280.02259 * 19 18 17 21 21 C 1.50469 * 108.87519 * 153.56021 * 14 13 2 22 22 H 1.09008 * 109.63302 * 95.22354 * 21 14 13 23 23 O 1.42900 * 109.63339 * 334.83233 * 21 14 13 24 24 H 1.09001 * 109.46642 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46901 * 300.00234 * 1 2 3 26 26 H 1.08999 * 109.47112 * 60.00253 * 1 2 3 27 27 H 1.09000 * 109.47486 * 55.00077 * 4 2 1 28 28 H 1.09001 * 109.47362 * 294.99354 * 4 2 1 29 29 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 30 30 H 1.00892 * 110.99807 * 151.04649 * 13 2 1 31 31 H 1.08999 * 108.81726 * 318.37085 * 16 14 13 32 32 H 1.09001 * 108.81499 * 76.64988 * 16 14 13 33 33 H 1.08994 * 108.91539 * 197.60751 * 17 16 14 34 34 H 1.09008 * 108.70638 * 79.13947 * 17 16 14 35 35 H 1.09000 * 109.62680 * 334.35634 * 18 17 16 36 36 H 1.09000 * 109.62687 * 213.77928 * 18 17 16 37 37 H 1.08996 * 108.89642 * 159.26643 * 19 18 17 38 38 H 1.09009 * 108.81728 * 40.72383 * 19 18 17 39 39 H 1.09002 * 108.88969 * 301.18519 * 20 19 18 40 40 H 1.08991 * 108.82263 * 182.63917 * 20 19 18 41 41 H 0.96700 * 113.99999 * 180.02562 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6148 -1.3126 6 1 4.0786 -0.0819 -0.5417 7 6 4.2305 -1.1934 -2.3577 8 7 3.5766 -1.8377 -3.2995 9 14 6.0923 -1.0622 -2.4359 10 1 6.6839 -1.6881 -1.2264 11 1 6.5873 -1.7621 -3.6485 12 1 6.4856 0.3686 -2.4956 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3469 15 1 1.2540 0.9279 2.2807 16 6 3.4085 1.0047 2.2888 17 6 3.7744 1.6624 3.6325 18 6 2.5852 2.2834 4.3137 19 6 1.9951 1.2567 5.3021 20 6 1.1574 0.2676 4.6403 21 6 1.9420 -0.5758 3.6145 22 1 2.9300 -0.8092 4.0117 23 8 1.2353 -1.7877 3.3429 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6055 -0.2617 -2.1370 28 1 1.7518 -1.7715 -1.2056 29 1 4.0610 -2.2444 -4.0348 30 1 2.9173 -1.1204 1.0288 31 1 4.2075 0.3211 2.0017 32 1 3.3249 1.7826 1.5299 33 1 4.5227 2.4350 3.4555 34 1 4.2003 0.9033 4.2888 35 1 1.8341 2.5485 3.5695 36 1 2.8984 3.1755 4.8559 37 1 1.3976 1.7851 6.0450 38 1 2.8139 0.7445 5.8076 39 1 0.3440 0.7805 4.1270 40 1 0.7352 -0.3967 5.3942 41 1 1.1088 -2.3515 4.1182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695779189.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:13 Heat of formation + Delta-G solvation = -73.158726 kcal Electronic energy + Delta-G solvation = -18693.640522 eV Core-core repulsion = 15993.361296 eV Total energy + Delta-G solvation = -2700.279226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.45429 -36.08705 -35.51945 -32.91999 -31.86731 -30.76422 -27.61992 -27.30330 -24.46765 -23.48548 -22.61114 -20.75114 -19.25099 -19.02248 -17.14361 -16.26743 -15.54818 -15.09071 -14.46582 -14.33134 -14.23455 -13.67776 -13.61328 -13.18206 -12.78969 -12.55166 -11.99558 -11.77556 -11.46475 -11.43044 -11.30905 -11.11336 -10.92369 -10.76642 -10.63439 -10.53603 -10.48268 -10.26358 -10.15649 -9.89202 -9.40552 -9.12810 -8.98241 -8.34029 -7.34976 -5.97292 -3.99783 3.32974 3.38040 3.39509 4.46641 4.46854 4.64652 4.65507 5.02382 5.06702 5.25467 5.30927 5.36141 5.39718 5.45015 5.50986 5.76697 5.83275 6.00089 6.04357 6.06151 6.13361 6.17958 6.20982 6.24620 6.33305 6.36595 6.42773 6.52320 6.62260 6.68178 7.06225 7.07920 7.64271 7.71372 8.02705 8.06527 8.27001 8.41812 8.51016 9.06316 9.63548 11.13769 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025896 B = 0.006858 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.991019 B = 4081.837405 C = 4603.845015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.087 3.913 3 H 0.025 0.975 4 C 0.021 3.979 5 C -0.521 4.521 6 H 0.051 0.949 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.657 5.657 14 C 0.095 3.905 15 H 0.070 0.930 16 C -0.146 4.146 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.115 4.115 20 C -0.149 4.149 21 C 0.121 3.879 22 H 0.047 0.953 23 O -0.530 6.530 24 H 0.055 0.945 25 H 0.033 0.967 26 H 0.044 0.956 27 H 0.019 0.981 28 H 0.026 0.974 29 H 0.261 0.739 30 H 0.352 0.648 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.715 5.661 16.442 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.022 4.022 3 H 0.043 0.957 4 C -0.017 4.017 5 C -0.559 4.559 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.289 5.289 14 C -0.016 4.016 15 H 0.088 0.912 16 C -0.186 4.186 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.152 4.152 20 C -0.187 4.187 21 C 0.061 3.939 22 H 0.065 0.935 23 O -0.331 6.331 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.173 0.827 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.316 5.542 15.790 17.060 hybrid contribution 1.910 0.493 0.215 1.984 sum -1.407 6.035 16.005 17.162 Atomic orbital electron populations 1.21775 0.96948 1.01329 0.98949 1.21612 0.93255 0.95619 0.91728 0.95719 1.19265 0.95275 0.96274 0.90838 1.21151 0.92296 1.34159 1.08290 0.93065 1.24983 0.98046 0.95321 0.95771 1.69953 1.35473 1.35685 1.11940 0.86730 0.86180 0.78065 0.77431 1.20258 1.21299 1.20451 1.60603 1.34460 1.30518 1.03364 1.21376 0.95922 0.92837 0.91467 0.91183 1.22713 0.98566 1.00330 0.96963 1.21322 0.97683 0.99625 0.96926 1.21373 0.98258 0.97685 0.98364 1.20432 0.99616 0.97019 0.98140 1.21217 0.99695 0.98768 0.99065 1.21467 0.93229 0.85049 0.94186 0.93527 1.86888 1.78541 1.31534 1.36142 0.92588 0.94764 0.93732 0.96291 0.95576 0.92972 0.82693 0.91536 0.91751 0.92507 0.92328 0.91493 0.92165 0.92450 0.92294 0.91610 0.92185 0.79881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.40 37.16 0.35 -2.21 16 2 C 0.09 1.89 2.38 -67.71 -0.16 1.73 16 3 H 0.02 0.54 7.19 -51.93 -0.37 0.17 16 4 C 0.02 0.55 4.57 -27.88 -0.13 0.42 16 5 C -0.52 -14.49 8.11 -34.44 -0.28 -14.77 16 6 H 0.05 1.37 7.50 -52.49 -0.39 0.98 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.66 -13.25 5.06 -100.48 -0.51 -13.76 16 14 C 0.10 1.55 1.74 -68.42 -0.12 1.43 16 15 H 0.07 1.17 5.54 -51.93 -0.29 0.88 16 16 C -0.15 -2.24 5.13 -25.65 -0.13 -2.38 16 17 C -0.12 -1.41 5.31 -27.47 -0.15 -1.56 16 18 C -0.12 -1.27 5.61 -27.35 -0.15 -1.43 16 19 C -0.11 -1.13 5.26 -29.60 -0.16 -1.29 16 20 C -0.15 -1.68 4.93 -29.60 -0.15 -1.82 16 21 C 0.12 1.68 3.04 -27.34 -0.08 1.60 16 22 H 0.05 0.63 6.97 -51.92 -0.36 0.27 16 23 O -0.53 -8.14 12.35 -35.23 -0.44 -8.58 16 24 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.03 0.60 7.40 -51.93 -0.38 0.21 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.35 7.79 6.69 -39.30 -0.26 7.52 16 31 H 0.07 1.12 7.71 -51.93 -0.40 0.72 16 32 H 0.06 1.06 7.62 -51.93 -0.40 0.66 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.67 6.62 -51.92 -0.34 0.33 16 35 H 0.07 0.78 6.98 -51.93 -0.36 0.41 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.56 7.47 -51.92 -0.39 0.17 16 39 H 0.07 0.80 7.47 -51.93 -0.39 0.42 16 40 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 41 H 0.36 3.79 9.06 45.56 0.41 4.20 16 LS Contribution 310.11 15.07 4.67 4.67 Total: -1.00 -30.51 310.11 -8.25 -38.76 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.44 Total: 7.10 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -1.25 Total: -18.64 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.23 Total: -39.96 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.44 Total: -8.58 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.51 -8.25 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695779189.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.401 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds