Wall clock time and date at job start Mon Mar 30 2020 04:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46642 * 2 1 4 4 C 1.52999 * 109.46984 * 240.00139 * 2 1 3 5 5 C 1.50706 * 109.46573 * 175.00011 * 4 2 1 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 2 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47405 * 60.00219 * 9 7 5 11 11 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 13 13 N 1.46901 * 109.47052 * 119.99792 * 2 1 3 14 14 C 1.46897 * 110.99894 * 275.00562 * 13 2 1 15 15 H 1.08997 * 108.85980 * 34.99664 * 14 13 2 16 16 C 1.54065 * 108.87290 * 276.43787 * 14 13 2 17 17 C 1.54012 * 112.85508 * 197.40955 * 16 14 13 18 18 C 1.50468 * 112.54683 * 318.44561 * 17 16 14 19 19 C 1.54242 * 108.53084 * 94.06365 * 18 17 16 20 20 C 1.45540 * 112.40763 * 280.02259 * 19 18 17 21 21 C 1.50469 * 108.87519 * 153.56021 * 14 13 2 22 22 H 1.09008 * 109.63302 * 95.22354 * 21 14 13 23 23 O 1.42900 * 109.63339 * 334.83233 * 21 14 13 24 24 H 1.09001 * 109.46642 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46901 * 300.00234 * 1 2 3 26 26 H 1.08999 * 109.47112 * 60.00253 * 1 2 3 27 27 H 1.09000 * 109.47486 * 55.00077 * 4 2 1 28 28 H 1.09001 * 109.47362 * 294.99354 * 4 2 1 29 29 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 30 30 H 1.00892 * 110.99807 * 151.04649 * 13 2 1 31 31 H 1.08999 * 108.81726 * 318.37085 * 16 14 13 32 32 H 1.09001 * 108.81499 * 76.64988 * 16 14 13 33 33 H 1.08994 * 108.91539 * 197.60751 * 17 16 14 34 34 H 1.09008 * 108.70638 * 79.13947 * 17 16 14 35 35 H 1.09000 * 109.62680 * 334.35634 * 18 17 16 36 36 H 1.09000 * 109.62687 * 213.77928 * 18 17 16 37 37 H 1.08996 * 108.89642 * 159.26643 * 19 18 17 38 38 H 1.09009 * 108.81728 * 40.72383 * 19 18 17 39 39 H 1.09002 * 108.88969 * 301.18519 * 20 19 18 40 40 H 1.08991 * 108.82263 * 182.63917 * 20 19 18 41 41 H 0.96700 * 113.99999 * 180.02562 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6148 -1.3126 6 1 4.0786 -0.0819 -0.5417 7 6 4.2305 -1.1934 -2.3577 8 7 3.5766 -1.8377 -3.2995 9 14 6.0923 -1.0622 -2.4359 10 1 6.6839 -1.6881 -1.2264 11 1 6.5873 -1.7621 -3.6485 12 1 6.4856 0.3686 -2.4956 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3469 15 1 1.2540 0.9279 2.2807 16 6 3.4085 1.0047 2.2888 17 6 3.7744 1.6624 3.6325 18 6 2.5852 2.2834 4.3137 19 6 1.9951 1.2567 5.3021 20 6 1.1574 0.2676 4.6403 21 6 1.9420 -0.5758 3.6145 22 1 2.9300 -0.8092 4.0117 23 8 1.2353 -1.7877 3.3429 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6055 -0.2617 -2.1370 28 1 1.7518 -1.7715 -1.2056 29 1 4.0610 -2.2444 -4.0348 30 1 2.9173 -1.1204 1.0288 31 1 4.2075 0.3211 2.0017 32 1 3.3249 1.7826 1.5299 33 1 4.5227 2.4350 3.4555 34 1 4.2003 0.9033 4.2888 35 1 1.8341 2.5485 3.5695 36 1 2.8984 3.1755 4.8559 37 1 1.3976 1.7851 6.0450 38 1 2.8139 0.7445 5.8076 39 1 0.3440 0.7805 4.1270 40 1 0.7352 -0.3967 5.3942 41 1 1.1088 -2.3515 4.1182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695779189.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:12 Heat of formation + Delta-G solvation = -94.300544 kcal Electronic energy + Delta-G solvation = -18694.557300 eV Core-core repulsion = 15993.361296 eV Total energy + Delta-G solvation = -2701.196004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59504 -37.68085 -36.58553 -34.85419 -33.28192 -32.01404 -29.35188 -28.95522 -25.61001 -25.12674 -24.11295 -21.77316 -20.91970 -20.21031 -18.48078 -18.25457 -16.83584 -16.68376 -16.23310 -15.35897 -15.24604 -15.03351 -14.89523 -14.63767 -14.17950 -13.77417 -13.56481 -13.41096 -13.20279 -12.93959 -12.71568 -12.65156 -12.55735 -12.37587 -12.09658 -12.04307 -11.58673 -11.52107 -11.32257 -11.26567 -11.03889 -10.91021 -10.56674 -10.45677 -8.94905 -8.18586 -6.28928 1.37768 1.40354 1.47970 2.39714 3.11851 3.34168 3.49017 3.75313 3.97945 4.10478 4.14628 4.25081 4.29712 4.34484 4.41137 4.53801 4.60465 4.69071 4.78760 4.82120 4.95697 5.04062 5.11062 5.16793 5.22756 5.25015 5.29704 5.32330 5.34626 5.37274 5.43257 5.50464 5.54984 5.59147 5.85082 6.22268 6.51813 6.73583 6.85668 7.22714 7.39225 8.93240 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025896 B = 0.006858 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.991019 B = 4081.837405 C = 4603.845015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.097 3.903 3 H 0.021 0.979 4 C 0.029 3.971 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.003 3.997 8 N -0.931 5.931 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.270 1.270 13 N -0.662 5.662 14 C 0.095 3.905 15 H 0.067 0.933 16 C -0.142 4.142 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.113 4.113 20 C -0.140 4.140 21 C 0.121 3.879 22 H 0.052 0.948 23 O -0.558 6.558 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.050 0.950 27 H -0.008 1.008 28 H -0.007 1.007 29 H 0.263 0.737 30 H 0.337 0.663 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.964 6.655 18.874 20.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.013 4.013 3 H 0.039 0.961 4 C -0.008 4.008 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.195 1.195 13 N -0.293 5.293 14 C -0.015 4.015 15 H 0.085 0.915 16 C -0.181 4.181 17 C -0.149 4.149 18 C -0.157 4.157 19 C -0.150 4.150 20 C -0.178 4.178 21 C 0.062 3.938 22 H 0.070 0.930 23 O -0.363 6.363 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.010 0.990 28 H 0.012 0.988 29 H 0.071 0.929 30 H 0.156 0.844 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.579 6.546 18.259 19.568 hybrid contribution 1.632 0.166 -0.546 1.729 sum -0.947 6.713 17.713 18.966 Atomic orbital electron populations 1.21676 0.95045 1.01070 1.00339 1.21406 0.94723 0.94596 0.90575 0.96124 1.19114 0.95026 0.94503 0.92195 1.21475 0.93105 1.33899 1.08389 0.92371 1.25909 1.03384 0.94867 0.95335 1.70098 1.37608 1.36750 1.12698 0.85583 0.79758 0.78465 0.77731 1.19115 1.20967 1.19460 1.60655 1.33513 1.31562 1.03621 1.21525 0.96300 0.92671 0.91043 0.91460 1.22624 0.97358 0.99412 0.98752 1.21291 0.98655 0.99907 0.95034 1.21386 0.97237 0.98660 0.98379 1.20430 0.99970 0.96567 0.98077 1.21122 0.99151 0.98901 0.98588 1.21465 0.94047 0.84916 0.93391 0.92992 1.86819 1.78740 1.32487 1.38251 0.93627 0.92586 0.93082 0.98967 0.98850 0.92871 0.84375 0.93464 0.93529 0.91798 0.91342 0.92710 0.90239 0.90534 0.91287 0.92668 0.90217 0.77536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 9.40 71.99 0.68 -4.12 16 2 C 0.10 4.29 2.38 44.92 0.11 4.40 16 3 H 0.02 0.93 7.19 -2.39 -0.02 0.91 16 4 C 0.03 1.59 4.57 29.85 0.14 1.73 16 5 C -0.53 -30.25 8.11 25.60 0.21 -30.05 16 6 H 0.06 3.17 7.50 -2.91 -0.02 3.14 16 7 C 0.00 0.18 5.46 84.66 0.46 0.64 16 8 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 9 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 N -0.66 -27.11 5.06 -471.82 -2.39 -29.49 16 14 C 0.10 3.04 1.74 44.46 0.08 3.12 16 15 H 0.07 2.18 5.54 -2.39 -0.01 2.17 16 16 C -0.14 -4.29 5.13 31.30 0.16 -4.13 16 17 C -0.11 -2.43 5.31 30.12 0.16 -2.27 16 18 C -0.12 -2.20 5.61 30.20 0.17 -2.03 16 19 C -0.11 -1.82 5.26 28.74 0.15 -1.67 16 20 C -0.14 -2.73 4.93 28.74 0.14 -2.58 16 21 C 0.12 3.18 3.04 30.20 0.09 3.27 16 22 H 0.05 1.31 6.97 -2.38 -0.02 1.29 16 23 O -0.56 -16.47 12.35 -148.98 -1.84 -18.31 16 24 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.06 1.92 7.40 -2.39 -0.02 1.90 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.34 15.32 6.69 -89.70 -0.60 14.72 16 31 H 0.05 1.59 7.71 -2.39 -0.02 1.57 16 32 H 0.05 1.54 7.62 -2.39 -0.02 1.52 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.38 6.62 -2.38 -0.02 1.37 16 35 H 0.05 1.16 6.98 -2.39 -0.02 1.14 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.01 7.47 -2.38 -0.02 0.99 16 39 H 0.05 1.21 7.47 -2.39 -0.02 1.19 16 40 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 41 H 0.38 7.33 9.06 -74.06 -0.67 6.66 16 Total: -1.00 -66.78 310.11 0.36 -66.42 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -0.27 Total: 25.67 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: 2.54 Total: -33.69 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -2.10 Total: -86.91 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -1.84 Total: -18.31 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -66.78 0.36 -66.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695779189.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.881 kcal (2) G-P(sol) polarization free energy of solvation -66.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds