Wall clock time and date at job start Mon Mar 30 2020 04:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47099 * 2 1 4 4 C 1.52996 * 109.46930 * 120.00324 * 2 1 3 5 5 C 1.50701 * 109.46701 * 185.00390 * 4 2 1 6 6 H 1.07994 * 120.00130 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99643 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00099 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99889 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47114 * 89.99807 * 9 7 5 11 11 H 1.48497 * 109.47220 * 210.00352 * 9 7 5 12 12 H 1.48500 * 109.46855 * 330.00102 * 9 7 5 13 13 N 1.46896 * 109.46880 * 240.00201 * 2 1 3 14 14 C 1.47447 * 111.00363 * 303.17156 * 13 2 1 15 15 C 1.54321 * 107.23301 * 123.25863 * 14 13 2 16 16 C 1.55138 * 103.01964 * 22.28986 * 15 14 13 17 17 C 1.47846 * 111.00249 * 64.01620 * 13 2 1 18 18 H 1.08998 * 110.37590 * 332.57184 * 17 13 2 19 19 C 1.52999 * 110.37344 * 94.80573 * 17 13 2 20 20 C 1.53003 * 109.47186 * 294.51255 * 19 17 13 21 21 C 1.52996 * 109.47254 * 185.41589 * 20 19 17 22 22 O 1.42902 * 109.47345 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47417 * 55.37828 * 1 2 3 24 24 H 1.09000 * 109.46918 * 175.37597 * 1 2 3 25 25 H 1.08993 * 109.47287 * 295.38006 * 1 2 3 26 26 H 1.08999 * 109.47128 * 304.99487 * 4 2 1 27 27 H 1.08993 * 109.47602 * 64.99906 * 4 2 1 28 28 H 0.97004 * 119.99537 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.89019 * 242.66736 * 14 13 2 30 30 H 1.09003 * 109.88358 * 3.85525 * 14 13 2 31 31 H 1.09002 * 110.69963 * 140.66423 * 15 14 13 32 32 H 1.09000 * 110.70584 * 263.90052 * 15 14 13 33 33 H 1.08996 * 110.99089 * 206.25611 * 16 15 14 34 34 H 1.08992 * 110.99369 * 82.43404 * 16 15 14 35 35 H 1.09004 * 109.47080 * 174.51165 * 19 17 13 36 36 H 1.09004 * 109.47337 * 54.51479 * 19 17 13 37 37 H 1.08999 * 109.47151 * 65.40950 * 20 19 17 38 38 H 1.09004 * 109.46855 * 305.41500 * 20 19 17 39 39 H 1.08994 * 109.47204 * 299.99754 * 21 20 19 40 40 H 1.09005 * 109.46919 * 59.99854 * 21 20 19 41 41 H 0.96696 * 114.00357 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0861 0.5392 7 6 4.2303 -1.1926 2.3583 8 7 3.5762 -1.8362 3.3004 9 14 6.0921 -1.0613 2.4367 10 1 6.4708 0.1615 3.1893 11 1 6.6441 -2.2564 3.1238 12 1 6.6413 -0.9846 1.0591 13 7 2.0196 -0.6924 -1.1994 14 6 1.4857 -2.0649 -1.2723 15 6 0.7484 -2.1976 -2.6215 16 6 1.3904 -1.0779 -3.4822 17 6 1.6261 0.0315 -2.4270 18 1 0.7097 0.5967 -2.2570 19 6 2.7508 0.9655 -2.8783 20 6 2.9517 2.0643 -1.8327 21 6 3.9808 3.0739 -2.3450 22 8 4.1680 4.1005 -1.3688 23 1 -0.3634 0.5839 -0.8457 24 1 -0.3633 -1.0243 -0.0828 25 1 -0.3633 0.4404 0.9284 26 1 1.6054 -0.2618 2.1369 27 1 1.7516 -1.7715 1.2055 28 1 4.0606 -2.2423 4.0362 29 1 2.3034 -2.7840 -1.2242 30 1 0.7897 -2.2360 -0.4510 31 1 0.9300 -3.1766 -3.0651 32 1 -0.3200 -2.0224 -2.4957 33 1 0.7035 -0.7393 -4.2578 34 1 2.3332 -1.4108 -3.9160 35 1 2.4862 1.4175 -3.8342 36 1 3.6737 0.3960 -2.9888 37 1 3.3092 1.6207 -0.9035 38 1 2.0039 2.5715 -1.6520 39 1 4.9285 2.5667 -2.5257 40 1 3.6232 3.5175 -3.2743 41 1 4.8091 4.7767 -1.6270 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695891948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:15 Heat of formation + Delta-G solvation = -62.649307 kcal Electronic energy + Delta-G solvation = -18702.117163 eV Core-core repulsion = 16002.293659 eV Total energy + Delta-G solvation = -2699.823504 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.31919 -36.83014 -34.21078 -33.22863 -32.04760 -28.79207 -28.30197 -27.23841 -24.67657 -23.11571 -22.07630 -20.48259 -19.92550 -18.34314 -17.10682 -16.42439 -16.06893 -15.22727 -14.82330 -14.34907 -13.76503 -13.64041 -13.17141 -13.08649 -12.54818 -12.37305 -12.04968 -11.68746 -11.60376 -11.36781 -11.23876 -10.95586 -10.80744 -10.66101 -10.60813 -10.43203 -10.31991 -10.21847 -10.14082 -9.78475 -9.69814 -9.03016 -8.85702 -8.19101 -7.37800 -5.82426 -3.79463 3.43528 3.49084 3.54318 4.38341 4.59896 4.63259 5.01722 5.09095 5.27540 5.32671 5.40236 5.52992 5.55316 5.62845 5.76410 5.83430 5.85368 5.96215 5.98473 6.02160 6.08904 6.12672 6.18209 6.20825 6.39434 6.46230 6.56526 6.70046 6.73514 6.77192 6.87383 7.09577 7.62628 7.77501 7.79503 7.94594 8.11951 8.20333 8.65693 9.26556 9.81865 11.29688 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.009658 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.561993 B = 2898.429291 C = 4009.848860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.073 3.927 3 H 0.079 0.921 4 C 0.030 3.970 5 C -0.485 4.485 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.887 3.113 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.274 1.274 13 N -0.494 5.494 14 C 0.047 3.953 15 C -0.143 4.143 16 C -0.122 4.122 17 C 0.065 3.935 18 H 0.052 0.948 19 C -0.094 4.094 20 C -0.126 4.126 21 C 0.078 3.922 22 O -0.572 6.572 23 H 0.040 0.960 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.016 0.984 27 H 0.017 0.983 28 H 0.256 0.744 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.035 0.965 41 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 5.122 -13.971 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.035 4.035 3 H 0.097 0.903 4 C -0.007 4.007 5 C -0.524 4.524 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.716 3.284 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.199 1.199 13 N -0.218 5.218 14 C -0.081 4.081 15 C -0.182 4.182 16 C -0.161 4.161 17 C -0.044 4.044 18 H 0.070 0.930 19 C -0.132 4.132 20 C -0.163 4.163 21 C 0.000 4.000 22 O -0.377 6.377 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.034 0.966 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.600 4.643 -13.442 14.670 hybrid contribution 0.542 0.332 -0.192 0.664 sum -3.058 4.975 -13.635 14.833 Atomic orbital electron populations 1.22579 1.00112 1.01044 1.00734 1.22211 0.89853 0.99229 0.92202 0.90315 1.19196 0.96388 0.95258 0.89866 1.21166 0.91774 1.32611 1.06815 0.92106 1.24997 0.97868 0.95979 0.96075 1.69969 1.35105 1.37198 1.12343 0.86660 0.86642 0.77128 0.77955 1.21032 1.21677 1.19944 1.63639 1.56799 1.00779 1.00571 1.22744 0.97909 0.92168 0.95280 1.22828 0.99323 0.98829 0.97179 1.22696 1.00583 0.95683 0.97091 1.22618 0.96143 0.94671 0.90967 0.93024 1.21373 0.99413 0.95756 0.96678 1.21689 0.98213 0.94949 1.01447 1.22247 0.98748 0.88876 0.90132 1.86557 1.65904 1.39109 1.46104 0.94117 0.92902 0.92620 0.96555 0.96427 0.93440 0.90934 0.92108 0.91539 0.92270 0.91927 0.90937 0.92816 0.91159 0.88559 0.92266 0.93845 0.94635 0.78190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.30 8.63 37.16 0.32 -2.98 16 2 C 0.07 1.51 1.92 -67.72 -0.13 1.38 16 3 H 0.08 1.68 5.29 -51.93 -0.27 1.41 16 4 C 0.03 0.77 4.32 -27.88 -0.12 0.65 16 5 C -0.49 -13.77 8.84 -34.44 -0.30 -14.08 16 6 H 0.06 1.73 7.61 -52.49 -0.40 1.33 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 9 Si 0.89 22.53 29.54 -169.99 -5.02 17.51 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.49 -9.34 4.39 -215.47 -0.95 -10.29 16 14 C 0.05 0.84 5.47 -2.83 -0.02 0.82 16 15 C -0.14 -1.99 6.94 -24.91 -0.17 -2.16 16 16 C -0.12 -1.61 6.50 -24.59 -0.16 -1.77 16 17 C 0.06 0.99 2.35 -66.18 -0.16 0.83 16 18 H 0.05 0.80 5.85 -51.93 -0.30 0.49 16 19 C -0.09 -1.34 4.94 -26.73 -0.13 -1.47 16 20 C -0.13 -1.99 4.28 -26.73 -0.11 -2.11 16 21 C 0.08 1.06 7.05 37.16 0.26 1.32 16 22 O -0.57 -8.39 13.66 -35.23 -0.48 -8.87 16 23 H 0.04 0.64 6.34 -51.93 -0.33 0.31 16 24 H 0.05 0.92 6.02 -51.93 -0.31 0.61 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.48 6.58 -51.93 -0.34 0.14 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.06 1.15 4.80 -51.93 -0.25 0.90 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.10 1.90 6.20 -51.93 -0.32 1.58 16 38 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.37 3.46 9.12 45.56 0.42 3.87 16 LS Contribution 312.57 15.07 4.71 4.71 Total: -1.00 -31.71 312.57 -8.14 -39.85 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.32 Total: 2.28 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -0.82 Total: -18.20 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.21 Total: -37.28 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.48 Total: -8.87 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.71 -8.14 -39.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695891948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.801 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds