Wall clock time and date at job start Mon Mar 30 2020 04:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47099 * 2 1 4 4 C 1.52996 * 109.46930 * 120.00324 * 2 1 3 5 5 C 1.50701 * 109.46701 * 185.00390 * 4 2 1 6 6 H 1.07994 * 120.00130 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99643 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00099 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99889 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47114 * 89.99807 * 9 7 5 11 11 H 1.48497 * 109.47220 * 210.00352 * 9 7 5 12 12 H 1.48500 * 109.46855 * 330.00102 * 9 7 5 13 13 N 1.46896 * 109.46880 * 240.00201 * 2 1 3 14 14 C 1.47447 * 111.00363 * 303.17156 * 13 2 1 15 15 C 1.54321 * 107.23301 * 123.25863 * 14 13 2 16 16 C 1.55138 * 103.01964 * 22.28986 * 15 14 13 17 17 C 1.47846 * 111.00249 * 64.01620 * 13 2 1 18 18 H 1.08998 * 110.37590 * 332.57184 * 17 13 2 19 19 C 1.52999 * 110.37344 * 94.80573 * 17 13 2 20 20 C 1.53003 * 109.47186 * 294.51255 * 19 17 13 21 21 C 1.52996 * 109.47254 * 185.41589 * 20 19 17 22 22 O 1.42902 * 109.47345 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47417 * 55.37828 * 1 2 3 24 24 H 1.09000 * 109.46918 * 175.37597 * 1 2 3 25 25 H 1.08993 * 109.47287 * 295.38006 * 1 2 3 26 26 H 1.08999 * 109.47128 * 304.99487 * 4 2 1 27 27 H 1.08993 * 109.47602 * 64.99906 * 4 2 1 28 28 H 0.97004 * 119.99537 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.89019 * 242.66736 * 14 13 2 30 30 H 1.09003 * 109.88358 * 3.85525 * 14 13 2 31 31 H 1.09002 * 110.69963 * 140.66423 * 15 14 13 32 32 H 1.09000 * 110.70584 * 263.90052 * 15 14 13 33 33 H 1.08996 * 110.99089 * 206.25611 * 16 15 14 34 34 H 1.08992 * 110.99369 * 82.43404 * 16 15 14 35 35 H 1.09004 * 109.47080 * 174.51165 * 19 17 13 36 36 H 1.09004 * 109.47337 * 54.51479 * 19 17 13 37 37 H 1.08999 * 109.47151 * 65.40950 * 20 19 17 38 38 H 1.09004 * 109.46855 * 305.41500 * 20 19 17 39 39 H 1.08994 * 109.47204 * 299.99754 * 21 20 19 40 40 H 1.09005 * 109.46919 * 59.99854 * 21 20 19 41 41 H 0.96696 * 114.00357 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0861 0.5392 7 6 4.2303 -1.1926 2.3583 8 7 3.5762 -1.8362 3.3004 9 14 6.0921 -1.0613 2.4367 10 1 6.4708 0.1615 3.1893 11 1 6.6441 -2.2564 3.1238 12 1 6.6413 -0.9846 1.0591 13 7 2.0196 -0.6924 -1.1994 14 6 1.4857 -2.0649 -1.2723 15 6 0.7484 -2.1976 -2.6215 16 6 1.3904 -1.0779 -3.4822 17 6 1.6261 0.0315 -2.4270 18 1 0.7097 0.5967 -2.2570 19 6 2.7508 0.9655 -2.8783 20 6 2.9517 2.0643 -1.8327 21 6 3.9808 3.0739 -2.3450 22 8 4.1680 4.1005 -1.3688 23 1 -0.3634 0.5839 -0.8457 24 1 -0.3633 -1.0243 -0.0828 25 1 -0.3633 0.4404 0.9284 26 1 1.6054 -0.2618 2.1369 27 1 1.7516 -1.7715 1.2055 28 1 4.0606 -2.2423 4.0362 29 1 2.3034 -2.7840 -1.2242 30 1 0.7897 -2.2360 -0.4510 31 1 0.9300 -3.1766 -3.0651 32 1 -0.3200 -2.0224 -2.4957 33 1 0.7035 -0.7393 -4.2578 34 1 2.3332 -1.4108 -3.9160 35 1 2.4862 1.4175 -3.8342 36 1 3.6737 0.3960 -2.9888 37 1 3.3092 1.6207 -0.9035 38 1 2.0039 2.5715 -1.6520 39 1 4.9285 2.5667 -2.5257 40 1 3.6232 3.5175 -3.2743 41 1 4.8091 4.7767 -1.6270 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695891948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:14 Heat of formation + Delta-G solvation = -85.473456 kcal Electronic energy + Delta-G solvation = -18703.106892 eV Core-core repulsion = 16002.293659 eV Total energy + Delta-G solvation = -2700.813233 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.68719 -37.93308 -35.91656 -34.49041 -34.00935 -30.12914 -29.74429 -29.09159 -25.85181 -25.12812 -23.46760 -21.64122 -21.26955 -19.87230 -18.36820 -18.18363 -17.72996 -16.52690 -16.38661 -16.05547 -15.07373 -14.87780 -14.67776 -14.42587 -14.15675 -13.74257 -13.51603 -13.44482 -13.17348 -12.82260 -12.68515 -12.60743 -12.52914 -12.32454 -11.99194 -11.87726 -11.75687 -11.60328 -11.34194 -11.31673 -11.07630 -10.87337 -10.69703 -10.46620 -8.82721 -8.09677 -6.13789 1.39131 1.40297 1.51657 2.46703 3.19250 3.31109 3.38312 3.86097 3.93640 4.12135 4.19196 4.24714 4.29344 4.41409 4.50574 4.52387 4.58762 4.65537 4.70688 4.82529 4.89681 4.93820 5.00746 5.04721 5.12119 5.16833 5.20877 5.27166 5.32331 5.42919 5.45328 5.54935 5.58238 5.75072 5.92748 6.36398 6.48135 6.62679 6.97270 7.00078 7.51566 9.02481 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.009658 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.561993 B = 2898.429291 C = 4009.848860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.085 3.915 3 H 0.069 0.931 4 C 0.037 3.963 5 C -0.492 4.492 6 H 0.056 0.944 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.267 1.267 13 N -0.516 5.516 14 C 0.043 3.957 15 C -0.132 4.132 16 C -0.113 4.113 17 C 0.060 3.940 18 H 0.057 0.943 19 C -0.087 4.087 20 C -0.124 4.124 21 C 0.078 3.922 22 O -0.600 6.600 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.050 0.950 26 H -0.015 1.015 27 H -0.006 1.006 28 H 0.258 0.742 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.710 5.966 -16.761 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.023 4.023 3 H 0.087 0.913 4 C 0.000 4.000 5 C -0.531 4.531 6 H 0.074 0.926 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.780 3.220 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.240 5.240 14 C -0.085 4.085 15 C -0.171 4.171 16 C -0.150 4.150 17 C -0.047 4.047 18 H 0.075 0.925 19 C -0.125 4.125 20 C -0.161 4.161 21 C 0.001 3.999 22 O -0.409 6.409 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.003 0.997 27 H 0.012 0.988 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.566 5.505 -16.254 17.527 hybrid contribution 0.535 0.091 0.700 0.885 sum -3.031 5.596 -15.554 16.806 Atomic orbital electron populations 1.22453 0.97712 1.01673 1.01673 1.21826 0.91678 0.97851 0.90960 0.91266 1.19045 0.95288 0.94130 0.91528 1.21448 0.93174 1.31966 1.06484 0.92569 1.25847 1.02778 0.95768 0.95817 1.70100 1.36979 1.38240 1.13027 0.85609 0.80855 0.77319 0.78231 1.20343 1.21083 1.19168 1.63491 1.57749 1.01429 1.01315 1.22690 0.97069 0.91270 0.97448 1.22762 0.99450 1.00256 0.94585 1.22691 1.01424 0.94110 0.96815 1.22776 0.96677 0.95393 0.89897 0.92529 1.21357 0.98599 0.94948 0.97636 1.21612 0.98584 0.95915 1.00020 1.22257 0.98264 0.88497 0.90859 1.86498 1.67023 1.40070 1.47260 0.91373 0.92699 0.93128 0.99695 0.98792 0.93361 0.93469 0.94001 0.89926 0.90993 0.88690 0.90726 0.89146 0.92266 0.93371 0.92603 0.93632 0.91364 0.75656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.21 8.63 71.98 0.62 -5.59 16 2 C 0.09 3.62 1.92 44.92 0.09 3.71 16 3 H 0.07 3.06 5.29 -2.39 -0.01 3.05 16 4 C 0.04 2.03 4.32 29.85 0.13 2.16 16 5 C -0.49 -29.02 8.84 25.60 0.23 -28.79 16 6 H 0.06 3.31 7.61 -2.91 -0.02 3.28 16 7 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 8 N -0.94 -59.53 13.29 21.45 0.28 -59.25 16 9 Si 0.95 47.15 29.54 68.60 2.03 49.17 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 13 N -0.52 -19.54 4.39 -835.61 -3.67 -23.21 16 14 C 0.04 1.55 5.47 86.65 0.47 2.03 16 15 C -0.13 -3.34 6.94 31.78 0.22 -3.11 16 16 C -0.11 -2.55 6.50 31.98 0.21 -2.34 16 17 C 0.06 1.71 2.35 45.39 0.11 1.82 16 18 H 0.06 1.57 5.85 -2.39 -0.01 1.55 16 19 C -0.09 -2.28 4.94 30.60 0.15 -2.13 16 20 C -0.12 -3.81 4.28 30.59 0.13 -3.68 16 21 C 0.08 1.98 7.05 71.98 0.51 2.49 16 22 O -0.60 -16.83 13.66 -148.98 -2.04 -18.86 16 23 H 0.07 2.02 6.34 -2.39 -0.02 2.00 16 24 H 0.05 1.90 6.02 -2.39 -0.01 1.88 16 25 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 26 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 27 H -0.01 -0.36 6.58 -2.39 -0.02 -0.38 16 28 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.64 4.80 -2.39 -0.01 1.63 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.68 8.06 -2.39 -0.02 1.66 16 35 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.05 1.95 6.20 -2.39 -0.01 1.93 16 38 H 0.06 1.71 8.11 -2.39 -0.02 1.69 16 39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.29 8.14 -2.38 -0.02 1.28 16 41 H 0.39 6.63 9.12 -74.06 -0.68 5.96 16 Total: -1.00 -71.08 312.57 0.25 -70.83 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.32 Total: 14.69 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: 3.32 Total: -33.37 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -3.38 Total: -82.45 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -2.04 Total: -18.86 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.17 kcal Total: -71.08 0.25 -70.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695891948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.645 kcal (2) G-P(sol) polarization free energy of solvation -71.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds