Wall clock time and date at job start Mon Mar 30 2020 04:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47056 * 2 1 4 4 C 1.53002 * 109.47205 * 240.00611 * 2 1 3 5 5 C 1.50697 * 109.47162 * 63.01189 * 4 2 1 6 6 H 1.07993 * 120.00150 * 5.11211 * 5 4 2 7 7 C 1.37878 * 119.99805 * 185.10913 * 5 4 2 8 8 N 1.31522 * 119.99976 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99973 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47008 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46959 * 120.00413 * 9 7 5 12 12 H 1.48503 * 109.47182 * 240.00377 * 9 7 5 13 13 N 1.46899 * 109.47532 * 120.00004 * 2 1 3 14 14 C 1.46898 * 111.00404 * 180.53497 * 13 2 1 15 15 C 1.46898 * 110.99915 * 304.49230 * 13 2 1 16 16 H 1.08994 * 109.47259 * 47.85906 * 15 13 2 17 17 C 1.53001 * 109.47109 * 287.85253 * 15 13 2 18 18 C 1.52998 * 109.47412 * 179.97438 * 17 15 13 19 19 C 1.52999 * 109.46761 * 60.00213 * 18 17 15 20 20 C 1.53002 * 109.47486 * 300.00209 * 19 18 17 21 21 C 1.52994 * 109.46826 * 59.99903 * 20 19 18 22 22 H 1.09005 * 109.47011 * 180.02562 * 21 20 19 23 23 O 1.42898 * 109.47376 * 60.00369 * 21 20 19 24 24 H 1.08994 * 109.47651 * 59.99719 * 1 2 3 25 25 H 1.09006 * 109.47056 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47245 * 299.99209 * 1 2 3 27 27 H 1.09001 * 109.47181 * 183.01695 * 4 2 1 28 28 H 1.09003 * 109.46754 * 303.01174 * 4 2 1 29 29 H 0.96996 * 119.99592 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47146 * 191.75771 * 14 13 2 31 31 H 1.09001 * 109.46928 * 311.76030 * 14 13 2 32 32 H 1.08999 * 109.46921 * 71.75139 * 14 13 2 33 33 H 1.08994 * 109.47593 * 300.00448 * 17 15 13 34 34 H 1.09003 * 109.46424 * 60.00413 * 17 15 13 35 35 H 1.08994 * 109.47320 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.47048 * 300.00721 * 18 17 15 37 37 H 1.09007 * 109.47272 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.46924 * 60.00433 * 19 18 17 39 39 H 1.09005 * 109.46782 * 299.99740 * 20 19 18 40 40 H 1.09003 * 109.46926 * 179.97438 * 20 19 18 41 41 H 0.96696 * 114.00046 * 59.99983 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5995 0.0312 -2.4786 6 1 1.0861 0.9760 -2.3784 7 6 1.8521 -0.4867 -3.7311 8 7 2.4770 -1.6376 -3.8531 9 14 1.3068 0.4461 -5.2549 10 1 0.6307 1.7046 -4.8494 11 1 2.4926 0.7682 -6.0888 12 1 0.3641 -0.3927 -6.0379 13 7 2.0197 -0.6925 1.1994 14 6 3.4881 -0.7010 1.2398 15 6 1.4630 -0.0912 2.4186 16 1 0.3867 0.0356 2.3024 17 6 2.1144 1.2724 2.6580 18 6 1.5342 1.8990 3.9275 19 6 1.8133 0.9837 5.1214 20 6 1.1620 -0.3799 4.8820 21 6 1.7422 -1.0063 3.6126 22 1 1.2779 -1.9776 3.4418 23 8 3.1532 -1.1728 3.7655 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 3.1286 -0.7682 -1.2227 28 1 1.6332 -1.7320 -1.2768 29 1 2.6550 -2.0017 -4.7343 30 1 3.8263 -1.3899 2.0138 31 1 3.8762 -1.0217 0.2730 32 1 3.8512 0.3024 1.4623 33 1 3.1907 1.1456 2.7742 34 1 1.9151 1.9245 1.8076 35 1 1.9979 2.8705 4.0978 36 1 0.4578 2.0258 3.8108 37 1 1.4004 1.4303 6.0260 38 1 2.8897 0.8569 5.2381 39 1 0.0857 -0.2529 4.7654 40 1 1.3613 -1.0320 5.7324 41 1 3.4042 -1.7427 4.5052 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695895384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:35 Heat of formation + Delta-G solvation = -58.188788 kcal Electronic energy + Delta-G solvation = -18787.177929 eV Core-core repulsion = 16087.547848 eV Total energy + Delta-G solvation = -2699.630081 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.76317 -36.60802 -34.84243 -33.03647 -30.98070 -29.82999 -28.87602 -26.97955 -24.29646 -23.53049 -22.55707 -21.40454 -19.62527 -18.40665 -16.76045 -16.54244 -15.72703 -15.02223 -14.55784 -14.41097 -14.34258 -13.66418 -13.50625 -13.05236 -12.69332 -12.20431 -11.99628 -11.91708 -11.65478 -11.44851 -11.25610 -11.21022 -10.99363 -10.81666 -10.64328 -10.54451 -10.50431 -10.10494 -9.85438 -9.71605 -9.46486 -9.03213 -8.98405 -8.26731 -7.41922 -5.94198 -3.95245 3.33764 3.41249 3.44925 4.40288 4.42815 4.57636 4.77228 4.92893 5.08903 5.29192 5.30266 5.41272 5.51252 5.55259 5.64507 5.75542 5.85595 5.94828 6.03129 6.08585 6.13071 6.16534 6.23959 6.33521 6.36492 6.40829 6.52097 6.71167 6.82589 6.96679 7.03534 7.21124 7.67216 7.79021 7.81638 7.93870 8.00513 8.19221 8.51900 9.11746 9.67353 11.17293 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.043856 B = 0.005574 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.303867 B = 5022.411200 C = 5285.008257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.083 3.917 3 H 0.025 0.975 4 C 0.032 3.968 5 C -0.514 4.514 6 H 0.054 0.946 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.528 5.528 14 C 0.016 3.984 15 C 0.087 3.913 16 H 0.091 0.909 17 C -0.151 4.151 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.150 4.150 21 C 0.115 3.885 22 H 0.059 0.941 23 O -0.549 6.549 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.016 0.984 28 H 0.027 0.973 29 H 0.259 0.741 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.018 0.982 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 2.997 17.690 18.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.024 4.024 3 H 0.043 0.957 4 C -0.006 4.006 5 C -0.553 4.553 6 H 0.073 0.927 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.251 5.251 14 C -0.132 4.132 15 C -0.022 4.022 16 H 0.109 0.891 17 C -0.190 4.190 18 C -0.152 4.152 19 C -0.150 4.150 20 C -0.189 4.189 21 C 0.056 3.944 22 H 0.077 0.923 23 O -0.354 6.354 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.036 0.964 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -1.823 2.773 16.983 17.304 hybrid contribution -0.064 0.989 -0.411 1.073 sum -1.886 3.762 16.571 17.097 Atomic orbital electron populations 1.21814 0.95793 1.01473 0.99896 1.21822 0.94594 0.95356 0.90651 0.95709 1.19180 0.96044 0.96185 0.89149 1.21246 1.37092 1.06003 0.90947 0.92749 1.24988 0.95411 0.94979 0.98983 1.69990 1.41753 1.18413 1.23175 0.86591 0.78348 0.79981 0.83401 1.19827 1.21123 1.21059 1.62305 1.08467 1.53336 1.00973 1.22727 0.87560 1.00095 1.02786 1.21812 0.99607 0.91067 0.89715 0.89093 1.22164 1.02017 0.97648 0.97202 1.21466 1.00535 0.98159 0.95045 1.21424 1.01198 0.94955 0.97467 1.22248 1.00891 0.97503 0.98229 1.21818 0.81482 0.97752 0.93331 0.92340 1.86720 1.22668 1.72438 1.53578 0.91589 0.92746 0.95057 0.96606 0.95484 0.93158 0.89618 0.91406 0.96364 0.90554 0.92153 0.92519 0.92465 0.92721 0.91520 0.91272 0.92015 0.79206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.65 37.15 0.32 -2.29 16 2 C 0.08 1.79 1.85 -67.72 -0.13 1.67 16 3 H 0.02 0.56 6.89 -51.93 -0.36 0.20 16 4 C 0.03 0.84 4.37 -27.88 -0.12 0.72 16 5 C -0.51 -14.61 8.29 -34.44 -0.29 -14.89 16 6 H 0.05 1.51 7.12 -52.49 -0.37 1.13 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -27.22 13.29 55.43 0.74 -26.49 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.53 -10.04 4.56 -226.91 -1.04 -11.07 16 14 C 0.02 0.30 8.34 60.06 0.50 0.80 16 15 C 0.09 1.34 1.93 -67.71 -0.13 1.21 16 16 H 0.09 1.40 5.59 -51.93 -0.29 1.11 16 17 C -0.15 -2.22 4.29 -26.73 -0.11 -2.33 16 18 C -0.11 -1.33 5.92 -26.73 -0.16 -1.49 16 19 C -0.11 -1.16 5.78 -26.73 -0.15 -1.31 16 20 C -0.15 -1.51 5.64 -26.73 -0.15 -1.66 16 21 C 0.12 1.46 3.40 -26.73 -0.09 1.37 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 O -0.55 -6.80 8.47 -35.23 -0.30 -7.09 16 24 H 0.07 1.37 6.92 -51.93 -0.36 1.01 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.03 0.52 6.09 -51.93 -0.32 0.21 16 27 H 0.02 0.45 6.03 -51.93 -0.31 0.13 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.09 1.50 5.44 -51.93 -0.28 1.21 16 31 H 0.07 1.44 5.73 -51.93 -0.30 1.14 16 32 H 0.02 0.33 5.73 -51.93 -0.30 0.03 16 33 H 0.08 1.20 5.70 -51.93 -0.30 0.91 16 34 H 0.06 0.98 6.87 -51.93 -0.36 0.62 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.72 7.68 -51.93 -0.40 0.32 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.36 2.98 9.08 45.56 0.41 3.39 16 LS Contribution 299.42 15.07 4.51 4.51 Total: -1.00 -30.73 299.42 -7.76 -38.49 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.04 Total: 1.45 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -0.61 Total: -16.66 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.30 Total: -37.56 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.30 Total: -7.09 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.73 -7.76 -38.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695895384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.703 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds