Wall clock time and date at job start Mon Mar 30 2020 04:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47056 * 2 1 4 4 C 1.53002 * 109.47205 * 240.00611 * 2 1 3 5 5 C 1.50697 * 109.47162 * 63.01189 * 4 2 1 6 6 H 1.07993 * 120.00150 * 5.11211 * 5 4 2 7 7 C 1.37878 * 119.99805 * 185.10913 * 5 4 2 8 8 N 1.31522 * 119.99976 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99973 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47008 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46959 * 120.00413 * 9 7 5 12 12 H 1.48503 * 109.47182 * 240.00377 * 9 7 5 13 13 N 1.46899 * 109.47532 * 120.00004 * 2 1 3 14 14 C 1.46898 * 111.00404 * 180.53497 * 13 2 1 15 15 C 1.46898 * 110.99915 * 304.49230 * 13 2 1 16 16 H 1.08994 * 109.47259 * 47.85906 * 15 13 2 17 17 C 1.53001 * 109.47109 * 287.85253 * 15 13 2 18 18 C 1.52998 * 109.47412 * 179.97438 * 17 15 13 19 19 C 1.52999 * 109.46761 * 60.00213 * 18 17 15 20 20 C 1.53002 * 109.47486 * 300.00209 * 19 18 17 21 21 C 1.52994 * 109.46826 * 59.99903 * 20 19 18 22 22 H 1.09005 * 109.47011 * 180.02562 * 21 20 19 23 23 O 1.42898 * 109.47376 * 60.00369 * 21 20 19 24 24 H 1.08994 * 109.47651 * 59.99719 * 1 2 3 25 25 H 1.09006 * 109.47056 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47245 * 299.99209 * 1 2 3 27 27 H 1.09001 * 109.47181 * 183.01695 * 4 2 1 28 28 H 1.09003 * 109.46754 * 303.01174 * 4 2 1 29 29 H 0.96996 * 119.99592 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47146 * 191.75771 * 14 13 2 31 31 H 1.09001 * 109.46928 * 311.76030 * 14 13 2 32 32 H 1.08999 * 109.46921 * 71.75139 * 14 13 2 33 33 H 1.08994 * 109.47593 * 300.00448 * 17 15 13 34 34 H 1.09003 * 109.46424 * 60.00413 * 17 15 13 35 35 H 1.08994 * 109.47320 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.47048 * 300.00721 * 18 17 15 37 37 H 1.09007 * 109.47272 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.46924 * 60.00433 * 19 18 17 39 39 H 1.09005 * 109.46782 * 299.99740 * 20 19 18 40 40 H 1.09003 * 109.46926 * 179.97438 * 20 19 18 41 41 H 0.96696 * 114.00046 * 59.99983 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5995 0.0312 -2.4786 6 1 1.0861 0.9760 -2.3784 7 6 1.8521 -0.4867 -3.7311 8 7 2.4770 -1.6376 -3.8531 9 14 1.3068 0.4461 -5.2549 10 1 0.6307 1.7046 -4.8494 11 1 2.4926 0.7682 -6.0888 12 1 0.3641 -0.3927 -6.0379 13 7 2.0197 -0.6925 1.1994 14 6 3.4881 -0.7010 1.2398 15 6 1.4630 -0.0912 2.4186 16 1 0.3867 0.0356 2.3024 17 6 2.1144 1.2724 2.6580 18 6 1.5342 1.8990 3.9275 19 6 1.8133 0.9837 5.1214 20 6 1.1620 -0.3799 4.8820 21 6 1.7422 -1.0063 3.6126 22 1 1.2779 -1.9776 3.4418 23 8 3.1532 -1.1728 3.7655 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 3.1286 -0.7682 -1.2227 28 1 1.6332 -1.7320 -1.2768 29 1 2.6550 -2.0017 -4.7343 30 1 3.8263 -1.3899 2.0138 31 1 3.8762 -1.0217 0.2730 32 1 3.8512 0.3024 1.4623 33 1 3.1907 1.1456 2.7742 34 1 1.9151 1.9245 1.8076 35 1 1.9979 2.8705 4.0978 36 1 0.4578 2.0258 3.8108 37 1 1.4004 1.4303 6.0260 38 1 2.8897 0.8569 5.2381 39 1 0.0857 -0.2529 4.7654 40 1 1.3613 -1.0320 5.7324 41 1 3.4042 -1.7427 4.5052 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695895384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:35 Heat of formation + Delta-G solvation = -79.725681 kcal Electronic energy + Delta-G solvation = -18788.111839 eV Core-core repulsion = 16087.547848 eV Total energy + Delta-G solvation = -2700.563991 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95699 -38.02685 -35.85136 -35.04077 -32.74660 -30.81131 -30.22639 -28.86707 -25.79567 -25.46466 -23.63776 -22.63006 -20.85948 -19.93687 -18.67962 -17.68092 -16.97142 -16.57128 -16.26983 -15.90845 -15.56350 -14.95189 -14.89217 -14.42439 -14.02442 -13.69866 -13.51267 -13.22454 -13.14320 -13.02744 -12.86085 -12.70987 -12.55257 -12.40531 -12.08189 -11.87490 -11.77859 -11.59236 -11.42160 -11.19651 -11.00486 -10.82622 -10.53785 -10.37600 -8.95216 -8.17793 -6.27517 1.39352 1.39594 1.52774 2.40800 3.14255 3.15680 3.48598 3.81607 3.98530 4.06712 4.24821 4.26730 4.33991 4.42278 4.47254 4.58382 4.62620 4.67207 4.74256 4.82163 4.93564 4.94827 5.09509 5.12017 5.19751 5.26094 5.28296 5.30805 5.35344 5.41668 5.45857 5.54529 5.64080 5.75115 5.81822 6.17275 6.44834 6.46716 6.88888 7.07224 7.40402 8.94823 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.043856 B = 0.005574 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.303867 B = 5022.411200 C = 5285.008257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.094 3.906 3 H 0.015 0.985 4 C 0.041 3.959 5 C -0.530 4.530 6 H 0.059 0.941 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.963 3.037 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.277 1.277 13 N -0.537 5.537 14 C 0.026 3.974 15 C 0.082 3.918 16 H 0.094 0.906 17 C -0.145 4.145 18 C -0.111 4.111 19 C -0.109 4.109 20 C -0.142 4.142 21 C 0.119 3.881 22 H 0.053 0.947 23 O -0.566 6.566 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.065 0.935 27 H -0.012 1.012 28 H -0.008 1.008 29 H 0.262 0.738 30 H 0.103 0.897 31 H 0.032 0.968 32 H 0.019 0.981 33 H 0.062 0.938 34 H 0.038 0.962 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 4.040 19.417 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.014 4.014 3 H 0.033 0.967 4 C 0.004 3.996 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.788 3.212 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.203 1.203 13 N -0.260 5.260 14 C -0.121 4.121 15 C -0.026 4.026 16 H 0.112 0.888 17 C -0.184 4.184 18 C -0.149 4.149 19 C -0.147 4.147 20 C -0.180 4.180 21 C 0.060 3.940 22 H 0.071 0.929 23 O -0.374 6.374 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.006 0.994 28 H 0.011 0.989 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -3.012 3.817 18.744 19.364 hybrid contribution 0.366 0.625 -0.895 1.152 sum -2.646 4.442 17.848 18.582 Atomic orbital electron populations 1.21704 0.94052 1.01364 1.00951 1.21514 0.95858 0.94034 0.90006 0.96743 1.19001 0.94173 0.94786 0.91666 1.21602 1.37055 1.06307 0.91928 0.92248 1.25941 0.95296 0.95867 1.02615 1.70132 1.42920 1.20171 1.24204 0.85428 0.78064 0.78880 0.78847 1.18547 1.20572 1.20299 1.62269 1.08436 1.53678 1.01621 1.22622 0.87715 1.00481 1.01297 1.21982 0.99468 0.92157 0.89003 0.88819 1.22067 1.01247 0.96965 0.98157 1.21463 1.00806 0.98630 0.94008 1.21410 1.01078 0.94767 0.97417 1.22189 1.00983 0.97534 0.97284 1.21701 0.81855 0.97014 0.93416 0.92868 1.86615 1.22522 1.73150 1.55074 0.92865 0.93368 0.91616 0.99378 0.98946 0.92904 0.87913 0.94877 0.96209 0.91938 0.94334 0.91872 0.91655 0.90593 0.92055 0.90546 0.89591 0.76796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.85 8.65 71.98 0.62 -4.23 16 2 C 0.09 4.16 1.85 44.91 0.08 4.25 16 3 H 0.01 0.68 6.89 -2.38 -0.02 0.66 16 4 C 0.04 2.29 4.37 29.85 0.13 2.42 16 5 C -0.53 -30.93 8.29 25.60 0.21 -30.72 16 6 H 0.06 3.33 7.12 -2.91 -0.02 3.31 16 7 C 0.00 0.02 5.46 84.65 0.46 0.48 16 8 N -0.93 -58.50 13.29 21.45 0.28 -58.22 16 9 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 10 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 N -0.54 -20.70 4.56 -871.81 -3.98 -24.68 16 14 C 0.03 1.02 8.34 127.69 1.06 2.09 16 15 C 0.08 2.43 1.93 44.92 0.09 2.52 16 16 H 0.09 2.70 5.59 -2.39 -0.01 2.69 16 17 C -0.15 -4.11 4.29 30.59 0.13 -3.98 16 18 C -0.11 -2.31 5.92 30.59 0.18 -2.13 16 19 C -0.11 -1.85 5.78 30.59 0.18 -1.68 16 20 C -0.14 -2.31 5.64 30.59 0.17 -2.14 16 21 C 0.12 2.76 3.40 30.59 0.10 2.86 16 22 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 23 O -0.57 -12.90 8.47 -148.98 -1.26 -14.16 16 24 H 0.05 2.20 6.92 -2.39 -0.02 2.19 16 25 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 26 H 0.07 2.10 6.09 -2.39 -0.01 2.09 16 27 H -0.01 -0.72 6.03 -2.39 -0.01 -0.74 16 28 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 29 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 30 H 0.10 3.61 5.44 -2.39 -0.01 3.60 16 31 H 0.03 1.49 5.73 -2.39 -0.01 1.47 16 32 H 0.02 0.74 5.73 -2.39 -0.01 0.73 16 33 H 0.06 1.93 5.70 -2.39 -0.01 1.92 16 34 H 0.04 1.23 6.87 -2.39 -0.02 1.22 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.06 1.13 7.68 -2.38 -0.02 1.11 16 39 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.38 5.29 9.08 -74.06 -0.67 4.62 16 Total: -1.00 -68.15 299.42 0.84 -67.32 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.34 Total: 12.71 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 3.43 Total: -30.28 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -3.69 Total: -82.90 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -1.26 Total: -14.16 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.15 0.84 -67.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695895384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.408 kcal (2) G-P(sol) polarization free energy of solvation -68.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds